Polarisation des quarks et des gluons dans le nucléon

The work presented in this thesis is related to the study of the longitudinal spin structure of the nucleon. The aim is to determine the contribution to the spin 1/2 of the proton in terms of its constituents, quarks and gluons. The analysis is performed on the data taken with the COMPASS experiment, which benefits from a polarised muon beam at 200 GeV scattered off polarised protons from an ammonia target of 1.2 m long. The double longitudinal spin asymmetry of deep inelastic scattering cross-Section. The spin-Dependent structure function of the proton g₁p is derived from these measurements, which extend the kinematic world coverage to unexplored region so far (0,0036 < x< 0,57; 1,03 < Q² (GeV/c)² < 96 and 23 < W² (GeV/c)² < 320).The results obtained with a high statistical precision are included in a Next-To-Leading order QCD analysis of world g₁p, g₁d and g₁n (proton, deuteron and neutron) data to parametrise the polarised quark and gluon distributions. The g₁ world coverage of the x and Q² kinematic domain, which is a key point in the sensitivity to the gluon polarisation ΔG, turns out to be too limited for an accurate ΔG determination. Nevertheless, the QCD analysis allows to determine the quark spin contributions to the proton spin to 0.26<ΔΣ<0.33 at Q² = 3 (GeV/c)² in the MSbar scheme. The dominant uncertainty on ΔΣ is related to the choice of functional forms assumed in the fit. Finally, the Bjorken sum rule, which constitutes a fundamental test of QCD, is verified on the COMPASS data alone with a precision of 9%.Cette thèse présente un travail relatif à l'étude de la structure en spin longitudinal du nucléon. Le but est de déterminer la contribution des constituants du proton, quarks et gluons, à la formation de son spin 1/2. L'analyse s'appuie sur les données de l'expérience COMPASS qui bénéficie d'un faisceau de muons polarisés à 200 GeV diffusé sur les protons polarisés d'une cible d'ammoniac (NH₃) de 1,2 m de long. On mesure l'asymétrie de spin longitudinal des sections efficaces de diffusion profondément inélastique. On extrait la fonction de structure en spin du proton, g₁p, étendant la couverture cinématique mondiale à des régions inexplorées jusqu'à maintenant (0,0036 < x < 0,57; 1,03 < Q² (GeV/c)² < 96 et 23 < W² (GeV/c)² < 320). Les résultats, d'une grande précision statistique, sont inclus dans une analyse des données mondiales de g₁p, g₁d et g₁n (proton, deutéron et neutron) au 2ème ordre de QCD afin de paramétrer les distributions de quarks et de gluons polarisés. L'étendue de la couverture cinématique en x et Q² des données mondiales de g₁, un élément déterminant pour la sensibilité à la polarisation des gluons ΔG, s'avère trop limitée pour constituer une extraction précise de celle-Ci. Néanmoins, l'analyse QCD permet de déterminer la contribution du spin des quarks au spin du proton à 0.26<ΔΣ<0.33 à Q² = 3 (GeV/c)² dans le schéma MSbar. L'étude montre que l'incertitude principale sur ΔΣ est liée au choix des formes fonctionnelles utilisées dans la régression des données. Enfin, la règle de somme de Bjorken, qui constitue un test de QCD, est vérifiée avec une précision de 9% en utilisant les données de COMPASS uniquement

Both chronic treatments by epothilone D and fluoxetine increase the short-term memory and differentially alter the mood status of STOP/MAP6 KO mice.: epothilone and fluoxetine improve STOP KO memory

International audienceRecent evidence underlines the crucial role of neuronal cytoskeleton in the pathophysiology of psychiatric diseases. In this line, the deletion of STOP/MAP6 (Stable Tubule Only Polypeptide), a microtubule-stabilizing protein, triggers various neurotransmission and behavioral defects, suggesting that STOP knockout (KO) mice could be a relevant experimental model for schizoaffective symptoms. To establish the predictive validity of such a mouse line, in which the brain serotonergic tone is dramatically imbalanced, the effects of a chronic fluoxetine treatment on the mood status of STOP KO mice were characterized. Moreover, we determined the impact, on mood, of a chronic treatment by epothilone D, a taxol-like microtubule-stabilizing compound that has previously been shown to improve the synaptic plasticity deficits of STOP KO mice. We demonstrated that chronic fluoxetine was either antidepressive and anxiolytic, or pro-depressive and anxiogenic, depending on the paradigm used to test treated mutant mice. Furthermore, control-treated STOP KO mice exhibited paradoxical behaviors, compared with their clear-cut basal mood status. Paradoxical fluoxetine effects and control-treated STOP KO behaviors could be because of their hyper-reactivity to acute and chronic stress. Interestingly, both epothilone D and fluoxetine chronic treatments improved the short-term memory of STOP KO mice. Such treatments did not affect the serotonin and norepinephrine transporter densities in cerebral areas of mice. Altogether, these data demonstrated that STOP KO mice could represent a useful model to study the relationship between cytoskeleton, mood, and stress, and to test innovative mood treatments, such as microtubule-stabilizing compounds

Colib'read on galaxy : a tools suite dedicated to biological information extraction from raw NGS reads

Background: With next-generation sequencing (NGS) technologies, the life sciences face a deluge of raw data. Classical analysis processes for such data often begin with an assembly step, needing large amounts of computing resources, and potentially removing or modifying parts of the biological information contained in the data. Our approach proposes to focus directly on biological questions, by considering raw unassembled NGS data, through a suite of six command-line tools. Findings: Dedicated to 'whole-genome assembly-free' treatments, the Colib'read tools suite uses optimized algorithms for various analyses of NGS datasets, such as variant calling or read set comparisons. Based on the use of a de Bruijn graph and bloom filter, such analyses can be performed in a few hours, using small amounts of memory. Applications using real data demonstrate the good accuracy of these tools compared to classical approaches. To facilitate data analysis and tools dissemination, we developed Galaxy tools and tool shed repositories. Conclusions: With the Colib'read Galaxy tools suite, we enable a broad range of life scientists to analyze raw NGS data. More importantly, our approach allows the maximum biological information to be retained in the data, and uses a very low memory footprint.Peer reviewe

RF-Separated Beam Project for the M2 Beam Line at CERN

Within the framework of the Physics Beyond Colliders initiative at CERN, discussions are underway on the feasibility of producing radio-frequency (RF) separated beams for Phase-2 of the AMBER experiment at the M2 beam line in the North experimental area of the CERN SPS. The technique of RF separation is applied to enrich the content of a certain particle type within a beam consisting of different species at the same momentum. It relies on the fact that each particle type has a different velocity, decreasing with rest mass. The successor of the COMPASS experiment, AMBER, requires for its Phase-2 measurements high-intensity, high-purity kaon (and antiproton) beams, which cannot be delivered with the currently existing conventional M2 beam line. The present contribution introduces the principle of RF separation and explains its dependence on different parameters of beam optics and hardware. The first examination of potential showstoppers for the RF-separated beam implementation is presented, based on the particle production rates, beam line transmission for specific optics settings, limitations for overall beam intensity and purity posed by beam line acceptance and radiation protection. Different beam optics settings have been examined, providing either focused or parallel beams inside the RF cavities. The separation and transmission capability of the different optics settings for realistic characteristics of RF cavities are discussed and the preliminary results of the potential purity and intensity of the RF-separated beam are presented. They illustrate the high importance of an RF-separated kaon beam for many of the AMBER Phase-2 data taking programs, such as spectroscopy, prompt-photon production, Primakoff reactions and kaon charge-radius measurement

Clinical and molecular characterization of 17q21.31 microdeletion syndrome in 14 French patients with mental retardation.

International audienceChromosome 17q21.31 microdeletion was one of the first genomic disorders identified by chromosome microarrays. We report here the clinical and molecular characterization of a new series of 14 French patients with this microdeletion syndrome. The most frequent clinical features were hypotonia, developmental delay and facial dysmorphism, but scaphocephaly, prenatal ischemic infarction and perception deafness were also described. Genotyping of the parents showed that the parent from which the abnormality was inherited carried the H2 inversion polymorphism, confirming that the H2 allele is necessary, but not sufficient to generate the 17q21.31 microdeletion. Previously reported molecular analyses of patients with 17q21.31 microdeletion syndrome defined a 493 kb genomic fragment that was deleted in most patients after taking into account frequent copy number variations in normal controls, but the deleted interval was significantly smaller (205 kb) in one of our patients, encompassing only the MAPT, STH and KIAA1267 genes. As this patient presents the classical phenotype of 17q21.31 syndrome, these data make it possible to define a new minimal critical region of 160.8 kb, strengthening the evidence for involvement of the MAPT gene in this syndrome

Dynamic Regulation of Tgf-B Signaling by Tif1γ: A Computational Approach

TIF1γ (Transcriptional Intermediary Factor 1 γ) has been implicated in Smad-dependent signaling by Transforming Growth Factor beta (TGF-β). Paradoxically, TIF1γ functions both as a transcriptional repressor or as an alternative transcription factor that promotes TGF-β signaling. Using ordinary differential-equation models, we have investigated the effect of TIF1γ on the dynamics of TGF-β signaling. An integrative model that includes the formation of transient TIF1γ-Smad2-Smad4 ternary complexes is the only one that can account for TGF-β signaling compatible with the different observations reported for TIF1γ. In addition, our model predicts that varying TIF1γ/Smad4 ratios play a critical role in the modulation of the transcriptional signal induced by TGF-β, especially for short stimulation times that mediate higher threshold responses. Chromatin immunoprecipitation analyses and quantification of the expression of TGF-β target genes as a function TIF1γ/Smad4 ratios fully validate this hypothesis. Our integrative model, which successfully unifies the seemingly opposite roles of TIF1γ, also reveals how changing TIF1γ/Smad4 ratios affect the cellular response to stimulation by TGF-β, accounting for a highly graded determination of cell fate

Mutations in TUBG1, DYNC1H1, KIF5C and KIF2A cause malformations of cortical development and microcephaly.

International audienceThe genetic causes of malformations of cortical development (MCD) remain largely unknown. Here we report the discovery of multiple pathogenic missense mutations in TUBG1, DYNC1H1 and KIF2A, as well as a single germline mosaic mutation in KIF5C, in subjects with MCD. We found a frequent recurrence of mutations in DYNC1H1, implying that this gene is a major locus for unexplained MCD. We further show that the mutations in KIF5C, KIF2A and DYNC1H1 affect ATP hydrolysis, productive protein folding and microtubule binding, respectively. In addition, we show that suppression of mouse Tubg1 expression in vivo interferes with proper neuronal migration, whereas expression of altered γ-tubulin proteins in Saccharomyces cerevisiae disrupts normal microtubule behavior. Our data reinforce the importance of centrosomal and microtubule-related proteins in cortical development and strongly suggest that microtubule-dependent mitotic and postmitotic processes are major contributors to the pathogenesis of MCD

A novel microdeletion syndrome at 3q13.31 characterised by developmental delay, postnatal overgrowth, hypoplastic male genitals, and characteristic facial features

Item does not contain fulltextBACKGROUND: Congenital deletions affecting 3q11q23 have rarely been reported and only five cases have been molecularly characterised. Genotype-phenotype correlation has been hampered by the variable sizes and breakpoints of the deletions. In this study, 14 novel patients with deletions in 3q11q23 were investigated and compared with 13 previously reported patients. METHODS: Clinical data were collected from 14 novel patients that had been investigated by high resolution microarray techniques. Molecular investigation and updated clinical information of one cytogenetically previously reported patient were also included. RESULTS: The molecular investigation identified deletions in the region 3q12.3q21.3 with different boundaries and variable sizes. The smallest studied deletion was 580 kb, located in 3q13.31. Genotype-phenotype comparison in 24 patients sharing this shortest region of overlapping deletion revealed several common major characteristics including significant developmental delay, muscular hypotonia, a high arched palate, and recognisable facial features including a short philtrum and protruding lips. Abnormal genitalia were found in the majority of males, several having micropenis. Finally, a postnatal growth pattern above the mean was apparent. The 580 kb deleted region includes five RefSeq genes and two of them are strong candidate genes for the developmental delay: DRD3 and ZBTB20. CONCLUSION: A newly recognised 3q13.31 microdeletion syndrome is delineated which is of diagnostic and prognostic value. Furthermore, two genes are suggested to be responsible for the main phenotype.1 februari 201

Search for displaced vertices arising from decays of new heavy particles in 7 TeV pp collisions at ATLAS

We present the results of a search for new, heavy particles that decay at a significant distance from their production point into a final state containing charged hadrons in association with a high-momentum muon. The search is conducted in a pp-collision data sample with a center-of-mass energy of 7 TeV and an integrated luminosity of 33 pb^-1 collected in 2010 by the ATLAS detector operating at the Large Hadron Collider. Production of such particles is expected in various scenarios of physics beyond the standard model. We observe no signal and place limits on the production cross-section of supersymmetric particles in an R-parity-violating scenario as a function of the neutralino lifetime. Limits are presented for different squark and neutralino masses, enabling extension of the limits to a variety of other models.Comment: 8 pages plus author list (20 pages total), 8 figures, 1 table, final version to appear in Physics Letters

Measurement of the polarisation of W bosons produced with large transverse momentum in pp collisions at sqrt(s) = 7 TeV with the ATLAS experiment

This paper describes an analysis of the angular distribution of W->enu and W->munu decays, using data from pp collisions at sqrt(s) = 7 TeV recorded with the ATLAS detector at the LHC in 2010, corresponding to an integrated luminosity of about 35 pb^-1. Using the decay lepton transverse momentum and the missing transverse energy, the W decay angular distribution projected onto the transverse plane is obtained and analysed in terms of helicity fractions f0, fL and fR over two ranges of W transverse momentum (ptw): 35 < ptw < 50 GeV and ptw > 50 GeV. Good agreement is found with theoretical predictions. For ptw > 50 GeV, the values of f0 and fL-fR, averaged over charge and lepton flavour, are measured to be : f0 = 0.127 +/- 0.030 +/- 0.108 and fL-fR = 0.252 +/- 0.017 +/- 0.030, where the first uncertainties are statistical, and the second include all systematic effects.Comment: 19 pages plus author list (34 pages total), 9 figures, 11 tables, revised author list, matches European Journal of Physics C versio