186 research outputs found

    A Twitter-Based Weighted Reputation system

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    AbstractTrust between buyers and sellers plays an essential role in online shopping. Therefore, reputation systems are, typically, integrated with online shopping systems to form trust decisions between sellers and buyers. Online Social Networks (OSNs), such as Twitter, LinkedIn, MySpace and Facebook connect people from all over the world in a virtual community. OSNs can provide information about the relationships between people. This information can be used to improve the reliability of reputation systems. With twitter having over than 200 million users and due to its microblogging nature, we choose twitter as a basis for a reputation system

    Review on Diffuser Augmented Wind Turbine (DAWT)

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    Wind energy technology is one of the fastest growing alternative energy technologies. However, conventional turbines commercially available in some countries are designed to operate at relatively high speeds to be appropriately efficient, limiting the use of wind turbines in areas with low wind speeds, such as urban areas. Therefore, a technique to enhance the possibility of wind energy use within the range of low speeds is needed. The techniques of augmenting wind by the concept of Diffuser Augmented Wind Turbine (DAWT) have been used to improve the efficiency of the wind turbines by increasing the wind speed upstream of the turbine. In this paper, a comprehensive review of previous studies on improving or augmentation power of Horizontal Axis Wind Turbines (HAWT) have been reviewed in two categories, first related with relative improvement of energy by improving the aerodynamic forces that affecting on HAWT in some different modifications for blades. Second, reviews different techniques to the augment the largest possible amount of power from HAWT focusing on DAWTs to gather information,helping researchers understand the research efforts undertaken so far and identify knowledge gaps in this area. DAWTs are studied in terms of diffuser shape design, sizing of investigation and geometry features which involved diffuser length, diffuser angle, and flange height. The conclusions in this work show that the use of DAWT achieves a quantum leap in increasing the production of wind power, especially in small turbines in urban areas if it properly designed. On the other hand, shrouding the wind turbine by the diffuser reduces the noise and protects the rotor blades from possible damage

    ABA inhibits myristoylation and induces shuttling of the RGLG1 E3 ligase to promote nuclear degradation of PP2CA

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    [EN] Hormone- and stress-induced shuttling of signaling or regulatory proteins is an important cellular mechanism to modulate hormone signaling and cope with abiotic stress. Hormone-induced ubiquitination plays a crucial role to determine half-life of key negative regulators of hormone signaling. For ABA signaling, degradation of clade A PP2Cs, such as PP2CA or ABI1, is a complementary mechanism to PYR/PYL/RCAR-mediated inhibition of PP2C activity. ABA promotes the degradation of PP2CA through the RGLG1 E3 ligase, although it is not known how ABA enhances the interaction of RGLG1 with PP2CA given they are predominantly found in plasma membrane and nucleus, respectively. We demonstrate that ABA modifies the subcellular localization of RGLG1 and promotes nuclear interaction with PP2CA. We found RGLG1 is myristoylated in vivo, which facilitates its attachment to plasma membrane. ABA inhibits myristoylation of RGLG1 through downregulation of Nmyristoyltransferase1 (NMT1) and promotes nuclear translocation of RGLG1 in a cycloheximide-insensitive manner. Enhanced nuclear recruitment of the E3 ligase was also promoted by increasing PP2CA protein levels and the formation of RGLG1-receptor-phosphatase complexes. We show that RGLG1Gly2Ala -mutated in the Nterminal myristoylation site- shows constitutive nuclear localization and causes enhanced response to ABA and salt/osmotic stress. RGLG1/5 can interact with certain monomeric ABA receptors, which facilitates the formation of nuclear complexes such as RGLG1-PP2CA-PYL8. In summary, we provide evidence that an E3 ligase can dynamically re-localize in response to both ABA and increased levels of its target, which reveals a mechanism to explain how ABA enhances RGLG1-PP2CA interaction and hence PP2CA degradation.Work in P.L.R.'s laboratory was supported by the Ministerio de Ciencia e Innovacion, Fondo Europeo de Desarrollo Regional and Consejo Superior de Investigaciones Cientificas through grants BIO2014-52537-R and BIO2017-82503-R. This work was also funded by grants from the Deutsche Forschungsgemeinschaft (DFG) Ku931/4-1 to J. K., and BA4742/1-2 to O.B. B.B. was funded by Programa VALi+ d GVA APOSTD/2017/039. J.J. was supported by an FPI contract from MINECOBelda Palazón, B.; Julian, J.; Coego, A.; Wu, Q.; Zhang, X.; Batistic, O.; Alquraishi, SA.... (2019). ABA inhibits myristoylation and induces shuttling of the RGLG1 E3 ligase to promote nuclear degradation of PP2CA. The Plant Journal. 98(5):813-825. https://doi.org/10.1111/tpj.14274S813825985Antoni, R., Gonzalez-Guzman, M., Rodriguez, L., Rodrigues, A., Pizzio, G. A., & Rodriguez, P. L. (2011). Selective Inhibition of Clade A Phosphatases Type 2C by PYR/PYL/RCAR Abscisic Acid Receptors    . Plant Physiology, 158(2), 970-980. doi:10.1104/pp.111.188623Antoni, R., Gonzalez-Guzman, M., Rodriguez, L., Peirats-Llobet, M., Pizzio, G. A., Fernandez, M. A., … Rodriguez, P. L. (2012). PYRABACTIN RESISTANCE1-LIKE8 Plays an Important Role for the Regulation of Abscisic Acid Signaling in Root      . Plant Physiology, 161(2), 931-941. doi:10.1104/pp.112.208678Belda-Palazon, B., Gonzalez-Garcia, M.-P., Lozano-Juste, J., Coego, A., Antoni, R., Julian, J., … Rodriguez, P. L. (2018). PYL8 mediates ABA perception in the root through non-cell-autonomous and ligand-stabilization–based mechanisms. Proceedings of the National Academy of Sciences, 115(50), E11857-E11863. doi:10.1073/pnas.1815410115Bhaskara, G. B., Nguyen, T. T., & Verslues, P. E. (2012). Unique Drought Resistance Functions of the Highly ABA-Induced Clade A Protein Phosphatase 2Cs    . Plant Physiology, 160(1), 379-395. doi:10.1104/pp.112.202408Bigeard, J., & Hirt, H. (2018). Nuclear Signaling of Plant MAPKs. Frontiers in Plant Science, 9. doi:10.3389/fpls.2018.00469Boisson, B., Giglione, C., & Meinnel, T. (2003). Unexpected Protein Families Including Cell Defense Components Feature in the N-Myristoylome of a Higher Eukaryote. Journal of Biological Chemistry, 278(44), 43418-43429. doi:10.1074/jbc.m307321200Burnaevskiy, N., Fox, T. G., Plymire, D. A., Ertelt, J. M., Weigele, B. A., Selyunin, A. S., … Alto, N. M. (2013). Proteolytic elimination of N-myristoyl modifications by the Shigella virulence factor IpaJ. Nature, 496(7443), 106-109. doi:10.1038/nature12004Burnaevskiy, N., Peng, T., Reddick, L. E., Hang, H. C., & Alto, N. M. (2015). 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A Gateway Cloning Vector Set for High-Throughput Functional Analysis of Genes in Planta. Plant Physiology, 133(2), 462-469. doi:10.1104/pp.103.027979Cutler, S. R., Rodriguez, P. L., Finkelstein, R. R., & Abrams, S. R. (2010). Abscisic Acid: Emergence of a Core Signaling Network. Annual Review of Plant Biology, 61(1), 651-679. doi:10.1146/annurev-arplant-042809-112122Edel, K. H., & Kudla, J. (2016). Integration of calcium and ABA signaling. Current Opinion in Plant Biology, 33, 83-91. doi:10.1016/j.pbi.2016.06.010French, A. P., Mills, S., Swarup, R., Bennett, M. J., & Pridmore, T. P. (2008). Colocalization of fluorescent markers in confocal microscope images of plant cells. Nature Protocols, 3(4), 619-628. doi:10.1038/nprot.2008.31Gehl, C., Waadt, R., Kudla, J., Mendel, R.-R., & Hänsch, R. (2009). New GATEWAY vectors for High Throughput Analyses of Protein–Protein Interactions by Bimolecular Fluorescence Complementation. Molecular Plant, 2(5), 1051-1058. doi:10.1093/mp/ssp040Herranz, M. C., Pallas, V., & Aparicio, F. (2012). Multifunctional Roles for the N-Terminal Basic Motif of Alfalfa mosaic virus Coat Protein: Nucleolar/Cytoplasmic Shuttling, Modulation of RNA-Binding Activity, and Virion Formation. Molecular Plant-Microbe Interactions®, 25(8), 1093-1103. doi:10.1094/mpmi-04-12-0079-rHornáček, M., Kováčik, L., Mazel, T., Cmarko, D., Bártová, E., Raška, I., & Smirnov, E. (2017). Fluctuations of pol I and fibrillarin contents of the nucleoli. Nucleus, 8(4), 421-432. doi:10.1080/19491034.2017.1306160Irigoyen, M. L., Iniesto, E., Rodriguez, L., Puga, M. I., Yanagawa, Y., Pick, E., … Rubio, V. (2014). Targeted Degradation of Abscisic Acid Receptors Is Mediated by the Ubiquitin Ligase Substrate Adaptor DDA1 in Arabidopsis. The Plant Cell, 26(2), 712-728. doi:10.1105/tpc.113.122234Kong, L., Cheng, J., Zhu, Y., Ding, Y., Meng, J., Chen, Z., … Gong, Z. (2015). Degradation of the ABA co-receptor ABI1 by PUB12/13 U-box E3 ligases. Nature Communications, 6(1). doi:10.1038/ncomms9630Kuhn, J. M., Boisson-Dernier, A., Dizon, M. B., Maktabi, M. H., & Schroeder, J. I. (2005). The Protein Phosphatase AtPP2CA Negatively Regulates Abscisic Acid Signal Transduction in Arabidopsis, and Effects of abh1 on AtPP2CA mRNA  . Plant Physiology, 140(1), 127-139. doi:10.1104/pp.105.070318Lee, S. C., Lan, W., Buchanan, B. B., & Luan, S. (2009). A protein kinase-phosphatase pair interacts with an ion channel to regulate ABA signaling in plant guard cells. Proceedings of the National Academy of Sciences, 106(50), 21419-21424. doi:10.1073/pnas.0910601106Lee, H.-J., Park, Y.-J., Seo, P. J., Kim, J.-H., Sim, H.-J., Kim, S.-G., & Park, C.-M. (2015). Systemic Immunity Requires SnRK2.8-Mediated Nuclear Import of NPR1 in Arabidopsis. The Plant Cell, 27(12), 3425-3438. doi:10.1105/tpc.15.00371Leitner, J., Petrasek, J., Tomanov, K., Retzer, K., Parezova, M., Korbei, B., … Luschnig, C. (2012). Lysine63-linked ubiquitylation of PIN2 auxin carrier protein governs hormonally controlled adaptation of Arabidopsis root growth. Proceedings of the National Academy of Sciences, 109(21), 8322-8327. doi:10.1073/pnas.1200824109Li, W., & Schmidt, W. (2010). A lysine-63-linked ubiquitin chain-forming conjugase, UBC13, promotes the developmental responses to iron deficiency in Arabidopsis roots. The Plant Journal, 62(2), 330-343. doi:10.1111/j.1365-313x.2010.04150.xLumba, S., Cutler, S., & McCourt, P. (2010). Plant Nuclear Hormone Receptors: A Role for Small Molecules in Protein-Protein Interactions. Annual Review of Cell and Developmental Biology, 26(1), 445-469. doi:10.1146/annurev-cellbio-100109-103956Lynch, T., Erickson, B. J., & Finkelstein, R. R. (2012). Direct interactions of ABA-insensitive(ABI)-clade protein phosphatase(PP)2Cs with calcium-dependent protein kinases and ABA response element-binding bZIPs may contribute to turning off ABA response. Plant Molecular Biology, 80(6), 647-658. doi:10.1007/s11103-012-9973-3Majeran, W., Le Caer, J.-P., Ponnala, L., Meinnel, T., & Giglione, C. (2018). Targeted Profiling of Arabidopsis thaliana Subproteomes Illuminates Co- and Posttranslationally N-Terminal Myristoylated Proteins. The Plant Cell, 30(3), 543-562. doi:10.1105/tpc.17.00523Moes, D., Himmelbach, A., Korte, A., Haberer, G., & Grill, E. (2008). Nuclear localization of the mutant protein phosphatase abi1 is required for insensitivity towards ABA responses in Arabidopsis. The Plant Journal, 54(5), 806-819. doi:10.1111/j.1365-313x.2008.03454.xMoreno-Alvero, M., Yunta, C., Gonzalez-Guzman, M., Lozano-Juste, J., Benavente, J. L., Arbona, V., … Albert, A. (2017). Structure of Ligand-Bound Intermediates of Crop ABA Receptors Highlights PP2C as Necessary ABA Co-receptor. Molecular Plant, 10(9), 1250-1253. doi:10.1016/j.molp.2017.07.004NAKAGAWA, T., SUZUKI, T., MURATA, S., NAKAMURA, S., HINO, T., MAEO, K., … ISHIGURO, S. (2007). Improved Gateway Binary Vectors: High-Performance Vectors for Creation of Fusion Constructs in Transgenic Analysis of Plants. Bioscience, Biotechnology, and Biochemistry, 71(8), 2095-2100. doi:10.1271/bbb.70216Peirats-Llobet, M., Han, S.-K., Gonzalez-Guzman, M., Jeong, C. W., Rodriguez, L., Belda-Palazon, B., … Rodriguez, P. L. (2016). A Direct Link between Abscisic Acid Sensing and the Chromatin-Remodeling ATPase BRAHMA via Core ABA Signaling Pathway Components. Molecular Plant, 9(1), 136-147. doi:10.1016/j.molp.2015.10.003Pierre, M., Traverso, J. A., Boisson, B., Domenichini, S., Bouchez, D., Giglione, C., & Meinnel, T. (2007). N-Myristoylation Regulates the SnRK1 Pathway inArabidopsis. The Plant Cell, 19(9), 2804-2821. doi:10.1105/tpc.107.051870Pizzio, G. A., Rodriguez, L., Antoni, R., Gonzalez-Guzman, M., Yunta, C., Merilo, E., … Rodriguez, P. L. (2013). The PYL4 A194T Mutant Uncovers a Key Role of PYR1-LIKE4/PROTEIN PHOSPHATASE 2CA Interaction for Abscisic Acid Signaling and Plant Drought Resistance      . Plant Physiology, 163(1), 441-455. doi:10.1104/pp.113.224162Rodriguez, L., Gonzalez-Guzman, M., Diaz, M., Rodrigues, A., Izquierdo-Garcia, A. C., Peirats-Llobet, M., … Rodriguez, P. L. (2014). C2-Domain Abscisic Acid-Related Proteins Mediate the Interaction of PYR/PYL/RCAR Abscisic Acid Receptors with the Plasma Membrane and Regulate Abscisic Acid Sensitivity in Arabidopsis. The Plant Cell, 26(12), 4802-4820. doi:10.1105/tpc.114.129973Romero-Barrios, N., & Vert, G. (2017). Proteasome-independent functions of lysine-63 polyubiquitination in plants. New Phytologist, 217(3), 995-1011. doi:10.1111/nph.14915Rubio, S., Rodrigues, A., Saez, A., Dizon, M. B., Galle, A., Kim, T.-H., … Rodriguez, P. L. (2009). Triple Loss of Function of Protein Phosphatases Type 2C Leads to Partial Constitutive Response to Endogenous Abscisic Acid      . Plant Physiology, 150(3), 1345-1355. doi:10.1104/pp.109.137174Saez, A., Rodrigues, A., Santiago, J., Rubio, S., & Rodriguez, P. L. (2008). HAB1–SWI3B Interaction Reveals a Link between Abscisic Acid Signaling and Putative SWI/SNF Chromatin-Remodeling Complexes in Arabidopsis. The Plant Cell, 20(11), 2972-2988. doi:10.1105/tpc.107.056705Santiago, J., Rodrigues, A., Saez, A., Rubio, S., Antoni, R., Dupeux, F., … Rodriguez, P. L. (2009). Modulation of drought resistance by the abscisic acid receptor PYL5 through inhibition of clade A PP2Cs. The Plant Journal, 60(4), 575-588. doi:10.1111/j.1365-313x.2009.03981.xSantiago, J., Dupeux, F., Round, A., Antoni, R., Park, S.-Y., Jamin, M., … Márquez, J. A. (2009). The abscisic acid receptor PYR1 in complex with abscisic acid. 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Current Opinion in Plant Biology, 40, 63-70. doi:10.1016/j.pbi.2017.07.007Umezawa, T., Sugiyama, N., Mizoguchi, M., Hayashi, S., Myouga, F., Yamaguchi-Shinozaki, K., … Shinozaki, K. (2009). Type 2C protein phosphatases directly regulate abscisic acid-activated protein kinases in Arabidopsis. Proceedings of the National Academy of Sciences, 106(41), 17588-17593. doi:10.1073/pnas.0907095106Vlad, F., Rubio, S., Rodrigues, A., Sirichandra, C., Belin, C., Robert, N., … Merlot, S. (2009). Protein Phosphatases 2C Regulate the Activation of the Snf1-Related Kinase OST1 by Abscisic Acid inArabidopsis . The Plant Cell, 21(10), 3170-3184. doi:10.1105/tpc.109.069179Wu, C., Feng, J., Wang, R., Liu, H., Yang, H., Rodriguez, P. L., … Wang, D. (2012). HRS1 Acts as a Negative Regulator of Abscisic Acid Signaling to Promote Timely Germination of Arabidopsis Seeds. 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Two Novel RING-Type Ubiquitin Ligases, RGLG3 and RGLG4, Are Essential for Jasmonate-Mediated Responses in Arabidopsis      . Plant Physiology, 160(2), 808-822. doi:10.1104/pp.112.20342

    Real-time crowd density mapping using a novel sensory fusion model of infrared and visual systems

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    Crowd dynamic management research has seen significant attention in recent years in research and industry in an attempt to improve safety level and management of large scale events and in large public places such as stadiums, theatres, railway stations, subways and other places where high flow of people at high densities is expected. Failure to detect the crowd behaviour at the right time could lead to unnecessary injuries and fatalities. Over the past decades there have been many incidents of crowd which caused major injuries and fatalities and lead to physical damages. Examples of crowd disasters occurred in past decades include the tragedy of Hillsborough football stadium at Sheffield where at least 93 football supporters have been killed and 400 injured in 1989 in Britain's worst-ever sporting disaster (BBC, 1989). Recently in Cambodia a pedestrians stampede during the Water Festival celebration resulted in 345 deaths and 400 injuries (BBC, 2010) and in 2011 at least 16 people were killed and 50 others were injured in a stampede in the northern Indian town of Haridwar (BBC, 2011). Such disasters could be avoided or losses reduced by using different technologies. Crowd simulation models have been found effective in the prediction of potential crowd hazards in critical situations and thus help in reducing fatalities. However, there is a need to combine the advancement in simulation with real time crowd characterisation such as the estimation of real time density in order to provide accurate prognosis in crowd behaviour and enhance crowd management and safety, particularly in mega event such as the Hajj. This paper addresses the use of novel sensory technology in order to estimate people’s dynamic density du ring one of the Hajj activities. The ultimate goal is that real time accurate estimation of density in different areas within the crowd could help to improve the decision making process and provide more accurate prediction of the crowd dynamics. This paper investigates the use of infrared and visual cameras supported by auxiliary sensors and artificial intelligence to evaluate the accuracy in estimating crowd density in an open space during Muslims Pilgrimage to Makkah (Mecca)

    Hydrophobically associating polymers for enhanced oil recovery – Part B: A review of modelling approach to flow in porous media

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    Polymer flow in porous media represents an entirely different scenario compared to bulk flow analysis using viscometers. This is due to the geometry and configuration of the medium which is made up of converging-diverging flow paths. In this article, a review of the single-phase flow of hydrophobically associating polymers in porous media is presented. Hydrophobic association between these polymer chains have been reported to occur and vary under reservoir conditions (temperature, salinity, and ion concentration). However, under these conditions, the critical aggregation concentration of associating polymers has been observed to change and the extent of change is a function of the hydrophobe make-up of the polymer. The outcome of this would indicate that polymer injectivity and its oil recovery efficiency are affected. As such, an understanding of the mechanism, propagation and sustainability of these hydrophobic interactions in reservoirs remains a critical focus of research. This becomes even imperative as the in-situ rheological profile associated with the different flow regimes may be affected. A numerical approach to investigating the real-time hydrophobic interactions between associating polymer chains during flow in porous media remains the viable option. However, this would require modifying existing time-independent models to accurately predict the various flow regimes and the dispersion of associating polymers to account for hydrophobic interactions

    Bioengineering horizon scan 2020.

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    Horizon scanning is intended to identify the opportunities and threats associated with technological, regulatory and social change. In 2017 some of the present authors conducted a horizon scan for bioengineering (Wintle et al., 2017). Here we report the results of a new horizon scan that is based on inputs from a larger and more international group of 38 participants. The final list of 20 issues includes topics spanning from the political (the regulation of genomic data, increased philanthropic funding and malicious uses of neurochemicals) to the environmental (crops for changing climates and agricultural gene drives). The early identification of such issues is relevant to researchers, policy-makers and the wider public

    Mapping enzyme-substrate interactions: its potential to study the mechanism of enzymes

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    With the increase of the need to use more sustainable processes for the industry in our society, the modeling of enzymes has become crucial to fully comprehend their mechanism of action and use this knowledge to enhance and design their properties. A lot of methods to study enzymes computationally exist and they have been classified on sequence-based, structure-based, and the more new artificial intelligence-based ones. Albeit the abundance of methods to help predict the function of an enzyme, molecular modeling is crucial when trying to understand the enzyme mechanism, as they aim to correlate atomistic information with experimental data. Among them, methods that simulate the system dynamics at a molecular mechanics level of theory (classical force fields) have shown to offer a comprehensive study. In this book chapter, we will analyze these techniques, emphasizing the importance of precise modeling of enzyme-substrate interactions. In the end, a brief explanation of the transference of the information from research studies to the industry is given accompanied with two examples of family enzymes where their modeling has helped their exploitation.Peer ReviewedObjectius de Desenvolupament Sostenible::9 - Indústria, Innovació i InfraestructuraPostprint (author's final draft
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