Coupled CP tensor decomposition with shared and distinct components for multi-task fMRI data fusion

Discovering components that are shared in multiple datasets, next to dataset-specific features, has great potential for studying the relationships between different subjects or tasks in functional Magnetic Resonance Imaging (fMRI) data. Coupled matrix and tensor factorization approaches have been useful for flexible data fusion, or decomposition to extract features that can be used in multiple ways. However, existing methods do not directly recover shared and dataset-specific components, which requires post-processing steps involving additional hyperparameter selection. In this paper, we propose a tensor-based framework for multi-task fMRI data fusion, using a partially constrained canonical polyadic (CP) decomposition model. Differently from previous approaches, the proposed method directly recovers shared and dataset-specific components, leading to results that are directly interpretable. A strategy to select a highly reproducible solution to the decomposition is also proposed. We evaluate the proposed methodology on real fMRI data of three tasks, and show that the proposed method finds meaningful components that clearly identify group differences between patients with schizophrenia and healthy controls

Honeybees Learn Landscape Features during Exploratory Orientation Flights

Degen J, Kirbach A, Reiter L, et al. Honeybees Learn Landscape Features during Exploratory Orientation Flights. Current Biology. 2016;26(20):2800-2804

Probability Distribution Characteristics for Surface Air–Sea Turbulent Heat Fluxes over the Global Ocean

To analyze the probability density distributions of surface turbulent heat fluxes, the authors apply the twoparametric modified Fisher–Tippett (MFT) distribution to the sensible and latent turbulent heat fluxes recomputed from 6-hourly NCEP–NCAR reanalysis state variables for the period from 1948 to 2008. They derived the mean climatology and seasonal cycle of the location and scale parameters of the MFT distribution. Analysis of the parameters of probability distributions identified the areas where similar surface turbulent fluxes are determined by the very different shape of probability density functions. Estimated extreme turbulent heat fluxes amount to 1500–2000 W m22 (for the 99th percentile) and can exceed 2000 W m22 for higher percentiles in the subpolar latitudes and western boundary current regions. Analysis of linear trends and interannual variability in the mean and extreme fluxes shows that the strongest trends in extreme fluxes (more than 15 W m22 decade21) in the western boundary current regions are associated with the changes in the shape of distribution. In many regions changes in extreme fluxes may be different from those for the mean fluxes at interannual and decadal time scales. The correlation between interannual variability of themean and extreme fluxes is relatively low in the tropics, the SouthernOcean, and the Kuroshio Extension region.Analysis of probability distributions in turbulent fluxes has also been used in assessing the impact of sampling errors in theVoluntaryObserving Ship (VOS)-based surface flux climatologies, allowed for the estimation of the impact of sampling in extreme fluxes. Although sampling does not have a visible systematic effect onmean fluxes, sampling uncertainties result in the underestimation of extreme flux values exceeding 100 W m22 in poorly sampled regions

Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas

Sarcomas are a broad family of mesenchymal malignancies exhibiting remarkable histologic diversity. We describe the multi-platform molecular landscape of 206 adult soft tissue sarcomas representing 6 major types. Along with novel insights into the biology of individual sarcoma types, we report three overarching findings: (1) unlike most epithelial malignancies, these sarcomas (excepting synovial sarcoma) are characterized predominantly by copy-number changes, with low mutational loads and only a few genes (, , ) highly recurrently mutated across sarcoma types; (2) within sarcoma types, genomic and regulomic diversity of driver pathways defines molecular subtypes associated with patient outcome; and (3) the immune microenvironment, inferred from DNA methylation and mRNA profiles, associates with outcome and may inform clinical trials of immune checkpoint inhibitors. Overall, this large-scale analysis reveals previously unappreciated sarcoma-type-specific changes in copy number, methylation, RNA, and protein, providing insights into refining sarcoma therapy and relationships to other cancer types

Search for dark matter produced in association with bottom or top quarks in √s = 13 TeV pp collisions with the ATLAS detector

A search for weakly interacting massive particle dark matter produced in association with bottom or top quarks is presented. Final states containing third-generation quarks and miss- ing transverse momentum are considered. The analysis uses 36.1 fb−1 of proton–proton collision data recorded by the ATLAS experiment at √s = 13 TeV in 2015 and 2016. No significant excess of events above the estimated backgrounds is observed. The results are in- terpreted in the framework of simplified models of spin-0 dark-matter mediators. For colour- neutral spin-0 mediators produced in association with top quarks and decaying into a pair of dark-matter particles, mediator masses below 50 GeV are excluded assuming a dark-matter candidate mass of 1 GeV and unitary couplings. For scalar and pseudoscalar mediators produced in association with bottom quarks, the search sets limits on the production cross- section of 300 times the predicted rate for mediators with masses between 10 and 50 GeV and assuming a dark-matter mass of 1 GeV and unitary coupling. Constraints on colour- charged scalar simplified models are also presented. Assuming a dark-matter particle mass of 35 GeV, mediator particles with mass below 1.1 TeV are excluded for couplings yielding a dark-matter relic density consistent with measurements