Plant Litter Type Dictates Microbial Communities Responsible for Greenhouse Gas Production in Amended Lake Sediments

The microbial communities of lake sediments play key roles in carbon cycling, linking lakes to their surrounding landscapes and to the global climate system as incubators of terrestrial organic matter and emitters of greenhouse gasses, respectively. Here, we amended lake sediments with three different plant leaf litters: a coniferous forest mix, deciduous forest mix, cattails (Typha latifolia) and then examined the bacterial, fungal and methanogen community profiles and abundances. Polyphenols were found to correlate with changes in the bacterial, methanogen, and fungal communities; most notably dominance of fungi over bacteria as polyphenol levels increased with higher abundance of the white rot fungi Phlebia spp. Additionally, we saw a shift in the dominant orders of fermentative bacteria with increasing polyphenol levels, and differences in the dominant methanogen groups, with high CH4 production being more strongly associated with generalist groups of methanogens found at lower polyphenol levels. Our present study provides insights into and basis for future study on how shifting upland and wetland plant communities may influence anaerobic microbial communities and processes in lake sediments, and may alter the fate of terrestrial carbon entering inland waters

Bridging between litterbags and whole-ecosystem experiments: a new approach for studying lake sediments

Nearshore sediments have a major influence over the functioning of aquatic ecosystems, but predicting their response to future environmental change has proven difficult. Previous manipulative experiments have faced challenges controlling environmental conditions, replicating sediment mixing dynamics, and extrapolating across spatial scales. Here we describe a new approach to manipulate lake sediments that overcomes previous concerns about reproducibility and environment controls, whilst also bridging the gap between smaller microcosm or litterbag experiments and whole-ecosystem manipulations. Our approach involves submerging moderate-sized (~15 L) artificial substrates that have been standardised to mimic natural sediments within the littoral zones of lakes. We show that this approach can accurately mirror the absolute dissolved organic carbon concentrations and pH of pore water, and to a lesser degree inorganic carbon concentrations, from natural lake sediments with similar organic matter profiles. On a relative basis, all measured variables had similar temporal dynamics between artificial and adjacent natural sediments. Late-summer zooplankton biomass also did not differ between natural and artificial sediments. By offering a more realistic way to manipulate freshwater sediments than previously possible, our approach can improve predictions of lake ecosystems in a changing world

Temperature-Induced Increase in Methane Release from Peat Bogs: A Mesocosm Experiment

Peat bogs are primarily situated at mid to high latitudes and future climatic change projections indicate that these areas may become increasingly wetter and warmer. Methane emissions from peat bogs are reduced by symbiotic methane oxidizing bacteria (methanotrophs). Higher temperatures and increasing water levels will enhance methane production, but also methane oxidation. To unravel the temperature effect on methane and carbon cycling, a set of mesocosm experiments were executed, where intact peat cores containing actively growing Sphagnum were incubated at 5, 10, 15, 20, and 25°C. After two months of incubation, methane flux measurements indicated that, at increasing temperatures, methanotrophs are not able to fully compensate for the increasing methane production by methanogens. Net methane fluxes showed a strong temperature-dependence, with higher methane fluxes at higher temperatures. After removal of Sphagnum, methane fluxes were higher, increasing with increasing temperature. This indicates that the methanotrophs associated with Sphagnum plants play an important role in limiting the net methane flux from peat. Methanotrophs appear to consume almost all methane transported through diffusion between 5 and 15°C. Still, even though methane consumption increased with increasing temperature, the higher fluxes from the methane producing microbes could not be balanced by methanotrophic activity. The efficiency of the Sphagnum-methanotroph consortium as a filter for methane escape thus decreases with increasing temperature. Whereas 98% of the produced methane is retained at 5°C, this drops to approximately 50% at 25°C. This implies that warming at the mid to high latitudes may be enhanced through increased methane release from peat bogs

Impacts of zero tillage on soil enzyme activities, microbial characteristics and organic matter functional chemistry in temperate soils

Zero tillage management of agricultural soils has potential for enhancing soil carbon (C) storage and reducing greenhouse gas emissions. However, the mechanisms which control carbon (C) sequestration in soil in response to zero tillage are not well understood. The aim of this study was to investigate the links between zero tillage practices and the functioning of the soil microbial community with regards to C cycling, testing the hypothesis that zero tillage enhances biological functioning in soil with positive implications for C sequestration. Specifically, we determined microbial respiration rates, enzyme activities, carbon source utilization and the functional chemistry of the soil organic matter in temperate well drained soils that had been zero tilled for seven years against annually tilled soils. Zero tilled soils contained 9% more soil C, 30% higher microbial biomass C than tilled soil and an increased presence of aromatic functional groups indicating greater preservation of recalcitrant C. Greater CO2 emission and higher respirational quotients were observed from tilled soils compared to zero tilled soils while microbial biomass was 30% greater in zero tilled soils indicating a more efficient functioning of the microbial community under zero tillage practice. Furthermore, microbial enzyme activities of dehydrogenase, cellulase, xylanase, β-glucosidase, phenol oxidase and peroxidase were higher in zero tilled soils. Considering zero tillage enhanced both microbial functioning and C storage in soil, we suggest that it offers significant promise to improve soil health and support mitigation measures against climate change

Measurements of hydrogen, oxygen and carbon isotope variability in Sphagnum moss along a micro-topographical gradient in a southern Patagonian peatland

Peat archives offer a diverse range of physical and chemical proxies from which it is possible to study past environmental and ecological changes. Direct numerical calibration and verification is difficult so process-based and mechanistic studies are therefore required to establish and quantify links between environmental changes and their associated proxy-responses. Traditional ‘space-for-time’ calibrations provide a solution to this calibration problem, but are often unable to isolate a single environmental variable from other potentially confounding variables. In this study, we explored the potential of a site-specific ‘space-for-time’ approach applied to a hummock-hollow transect on an ombrotrophic raised bog in Patagonia, southern Chile. Coupled stable carbon, oxygen and hydrogen isotopic measurements were made on individual samples of Sphagnum moss cellulose and compared with plant-associated waters, local hydrology, temperature and relative humidity, sampled at the same points along the study transect. Results reveal a range of environmental responses, which were supported by plant-physiological models in the case of carbon and oxygen isotopes. For hydrogen isotopes, the results obtained from cellulose indicated a need for further research into hydrogen isotope fractionation in Sphagnum. We recommend conducting site-specific characterization of plant response to support the development of peat-based isotope records for palaeoenvironmental research, and where logistically possible, that monitoring is conducted over timescales appropriate to the time-integrative nature of the Sphagnum record

Root exudate analogues accelerate CO 2 and CH 4 production in tropical peat

Root exudates represent a large and labile carbon input in tropical peatlands, but their contribution to carbon dioxide (CO2) and methane (CH4) production remains poorly understood. Changes in species composition and productivity of peatland plant communities in response to global change could alter both inputs of exudates and associated greenhouse gas emissions. We used manipulative laboratory incubations to assess the extent to which root exudate quantity and chemical composition drives greenhouse gas emissions from tropical peatlands. Peat was sampled from beneath canopy palms (Raphia taedigera) and broadleaved evergreen trees (Campnosperma panamensis) in an ombrotrophic wetland in Panama. Root exudate analogues comprising a mixture of sugars and organic acids were added in solution to peats derived from both species, with CO2 and CH4 measured over time. CO2 and CH4 production increased under most treatments, but the magnitude and duration of the response depended on the composition of the added labile carbon mixture rather than the quantity of carbon added or the botanical origin of the peat. Treatments containing organic acids increased soil pH and altered other soil properties including redox potential but did not affect the activities of extracellular hydrolytic enzymes. CO2 but not CH4 production was found to be linearly related to microbial activity and redox potential. Our findings demonstrate the importance of root exudate composition in regulating greenhouse gas fluxes and propose that in situ plant species changes, particularly those associated with land use change, may account for small scale spatial variation in CO2 and CH4 fluxes due to species specific root exudate compositions

Organic matter chemistry controls greenhouse gas emissions from permafrost peatlands

Large tracts of arctic and subarctic peatlands are underlain by permafrost. These peatlands store large quantities of carbon (C), and are currently under severe threat from climate change. The aim of this study was to determine the size and organic chemistry of the easily degradable C pool in permafrost peatlands and link the functional organic chemistry to temperature and moisture controls of greenhouse gas emissions. First, we used a combination of field measurements and laboratory experiments to assess the influence of increased temperature and flooding on CO₂ and CH₄ emissions from sixteen permafrost peatlands in subarctic Sweden and Canada. Second, we determined the variation in organic matter chemistry and the associated microbial community composition of the peat active layer, with depth using quantitative ¹³C solid-state NMR and molecular biomarkers respectively. We demonstrate that the peat organic chemistry strongly controls CO₂ release from peat and that ca. 35 and 26% of the peat organic matter, at the Swedish and Canadian peatlands sites, respectively, is easily degradable by heterotrophic microorganisms. In contrast to CO₂, CH₄ emissions were decoupled from peat functional organic chemistry. We show a strong relationship between the microbial community structure and the peat organic chemistry suggesting that substrate type and abundance is an important driver of microbial composition in sub-arctic peatlands. Despite considerable variation in peat chemistry and microbial community composition with depth the temperature sensitivity was comparable throughout the active layer. Our study shows that functional organic chemistry controls both soil respiration rates and the composition of the microbial community. Furthermore, if these peatlands collapse and flood on thawing, they are unlikely to become large emitters of CH₄ without additional input of labile substrates

Emissions of methane from northern peatlands : a review of management impacts and implications for future management options

This work was funded in part by the GHG-Europe project (EU grant agreement number: 244122) Greenhouse gases Europe projectPeer reviewedPublisher PD

Vascular plant‐mediated controls on atmospheric carbon assimilation and peat carbon decomposition under climate change

Climate change can alter peatland plant community composition by promoting the growth of vascular plants. How such vegetation change affects peatland carbon dynamics remains, however, unclear. In order to assess the effect of vegetation change on carbon uptake and release, we performed a vascular plant‐removal experiment in two Sphagnum‐dominated peatlands that represent contrasting stages of natural vegetation succession along a climatic gradient. Periodic measurements of net ecosystem CO2 exchange revealed that vascular plants play a crucial role in assuring the potential for net carbon uptake, particularly with a warmer climate. The presence of vascular plants, however, also increased ecosystem respiration, and by using the seasonal variation of respired CO2 radiocarbon (bomb‐14C) signature we demonstrate an enhanced heterotrophic decomposition of peat carbon due to rhizosphere priming. The observed rhizosphere priming of peat carbon decomposition was matched by more advanced humification of dissolved organic matter, which remained apparent beyond the plant growing season. Our results underline the relevance of rhizosphere priming in peatlands, especially when assessing the future carbon sink function of peatlands undergoing a shift in vegetation community composition in association with climate change

Variation in carbon and nitrogen concentrations among peatland categories at the global scale

Publisher Copyright: © 2022 This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 public domain dedication.Peatlands account for 15 to 30% of the world's soil carbon (C) stock and are important controls over global nitrogen (N) cycles. However, C and N concentrations are known to vary among peatlands contributing to the uncertainty of global C inventories, but there are few global studies that relate peatland classification to peat chemistry. We analyzed 436 peat cores sampled in 24 countries across six continents and measured C, N, and organic matter (OM) content at three depths down to 70 cm. Sites were distinguished between northern (387) and tropical (49) peatlands and assigned to one of six distinct broadly recognized peatland categories that vary primarily along a pH gradient. Peat C and N concentrations, OM content, and C:N ratios differed significantly among peatland categories, but few differences in chemistry with depth were found within each category. Across all peatlands C and N concentrations in the 10-20 cm layer, were 440 ± 85.1 g kg-1 and 13.9 ± 7.4 g kg-1, with an average C:N ratio of 30.1 ± 20.8. Among peatland categories, median C concentrations were highest in bogs, poor fens and tropical swamps (446-532 g kg-1) and lowest in intermediate and extremely rich fens (375-414 g kg-1). The C:OM ratio in peat was similar across most peatland categories, except in deeper samples from ombrotrophic tropical peat swamps that were higher than other peatlands categories. Peat N concentrations and C:N ratios varied approximately two-fold among peatland categories and N concentrations tended to be higher (and C:N lower) in intermediate fens compared with other peatland types. This study reports on a unique data set and demonstrates that differences in peat C and OM concentrations among broadly classified peatland categories are predictable, which can aid future studies that use land cover assessments to refine global peatland C and N stocks.Peer reviewe