193 research outputs found

    Characterization of Cylindrodendrum, Dactylonectria and Ilyonectria isolates associated with loquat decline in Sapin, with description of Cylindrodendrum alicantinum sp. nov

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    [EN] Thirty-one loquat orchards (Eriobotrya japonica 'Algerie') with plants exhibiting decline symptoms were surveyed between 2004 and 2007 in the province of Alicante, Spain. Twenty-eight representative isolates with Cylindrocarpon-like asexual morphs recovered from affected roots were included in this study, with the objective to characterize them by means of phenotypical characterization, DNA analysis and pathogenicity tests. Dactylonectria alcacerensis, D. torresensis and Ilyonectria robusta were identified based on morphological and cultural characteristics as well as DNA sequence data for part of histone H3, with D. torresensis the most frequent species. All of them are reported for the first time on loquat, and I. robusta is reported for the first time in Spain. In addition, one species is newly described, Cylindrodendrum alicantinum. Pathogenicity tests with representative isolates showed that these species were able to induce typical root rot disease symptoms, affecting plant development or even leading to plant death. This research demonstrates the association of species belonging to the genera Cylindrodendrum, Dactylonectria and Ilyonectria with root rot of loquat and loquat decline in the province of Alicante (eastern Spain). This information should be considered for the improvement of the current management strategies against these soil-borne pathogens when establishing new loquat plantations or introducing new susceptible fruit crops in the region.We acknowledge Dr. L. Lombard and Prof. Dr. P.W. Crous (CBS-KNAW Fungal Biodiversity Centre, The Netherlands) for valuable discussions and data sharing. This work was funded by the Cooperativa Agricola de Callosa d'En Sarria (Alicante, Spain). We would like to thank E. Soler for their technical assistance.AgustĂ­ Brisach, C.; Cabral, A.; GonzĂĄlez DomĂ­nguez, E.; Perez Y Sierra, AM.; LeĂłn Santana, M.; Abad Campos, MP.; GarcĂ­a JimĂ©nez, J.... (2016). Characterization of Cylindrodendrum, Dactylonectria and Ilyonectria isolates associated with loquat decline in Sapin, with description of Cylindrodendrum alicantinum sp. nov. EUROPEAN JOURNAL OF PLANT PATHOLOGY. 145(1):103-118. doi:10.1007/s10658-015-0820-7S1031181451AgustĂ­-Brisach, C., & Armengol, J. (2013). Black-foot disease of grapevine: an update on taxonomy, epidemiology and management strategies. Phytopathologia Mediterranea, 52, 245–261.AgustĂ­-Brisach, C., Gramaje, D., GarcĂ­a-JimĂ©nez, J., & Armengol, J. (2013a). Detection of Ilyonectria spp. in the grapevine nursery propagation process in Spain. European Journal of Plant Pathology, 137, 103–112.AgustĂ­-Brisach, C., Gramaje, D., GarcĂ­a-JimĂ©nez, J., & Armengol, J. (2013b). Detection of black-foot and Petri disease pathogens in natural soils of grapevine nurseries and vineyards using bait plants. Plant and Soil, 364, 5–13.Aiello, D., Guarnaccia, V., Vitale, A., Cirvilleri, G., Granata, G., Epifani, F., Perrone, G., Polizzi, G., Groenewald, J. Z., & Crous, P. W. (2014). Ilyonectria palmarum sp. nov. causing dry basal stem rot of Arecaceae. European Journal of Plant Pathology, 138, 347–359.Booth, C. D. (1966). The genus Cylindrocarpon. Mycological Papers (CMI), 104, 1–56.Brayford, D. (1993). Cylindrocarpon. In L. L. Singleton, J. D. Mihail, & C. M. Rush (Eds.), Methods for research on soilborne phytopathogenic fungi (pp. 103–106). St. Paul: APS Press.Cabral, A., Groenewald, J. Z., Rego, C., Oliveira, H., & Crous, P. W. (2012a). Cylindrocarpon root rot: multi-gene analysis reveals novel species within the Ilyonectria radicicola species complex. Mycological Progress, 11, 655–688.Cabral, A., Rego, C., Nascimento, T., Oliveira, H., Groenewald, J. Z., & Crous, P. W. (2012b). Multi-gene analysis and morphology reveal novel Ilyonectria species associated with black foot disease of grapevines. Fungal Biology, 116, 62–80.Calabrese, F. (2006). Origen de la especie. In M. AgustĂ­, C. Reig, & P. Undurraga (Eds.), El cultivo del nĂ­spero japonĂ©s. España: Pontificia Universidad CatĂłlica de ValparaĂ­so, Chile and Universidad PolitĂ©cnica de Valencia.Chaverri, P., Salgado, C., Hirooka, Y., Rossman, A. Y., & Samuels, G. J. (2011). Delimitation of Neonectria and Cylindrocarpon (Nectriaceae, Hypocreales, Ascomycota) and related genera with Cylindrocarpon-like anamorphs. Studies in Mycology, 68, 57–78.Crous, P. W., Gams, W., Stalpers, J. A., Robert, V., & Stegehuis, G. (2004a). MycoBank: an online initiative to launch mycology into the 21st century. Studies in Mycology, 50, 19–22.Crous, P. W., Groenewald, J. Z., Risede, J. M., & Hywel-Jones, N. L. (2004b). Calonectria species and their Cylindrocladium anamorphs: species with sphaeropedunculate vesicles. Studies in Mycology, 50, 415–429.Crous, P.W., Verkleij, G.J.M., Groenewald, J.Z., Samson, R.A. (Eds.) (2009). Fungal biodiversity. CBS laboratory manual series 1. Centraalbureau voor Schimmelcultures, Utrecht.Dhingra, O. D., & Sinclair, J. B. (1995). Basic plant pathology methods (2nd ed.). Boca Raton: CRC Press.Erper, I., AgustĂ­-Brisach, C., Tunali, B., & Armengol, J. (2013). Characterization of root rot disease of kiwifruit in the Black Sea region of Turkey. European Journal of Plant Pathology, 136, 291–300.Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39, 783–791.Gardes, M., & Bruns, T. D. (1993). ITS primers with enhanced specificity for basiodiomycetes-applications to the identification of mycorrhizae and rusts. Molecular Ecology, 2, 113–118.Glass, N. L., & Donaldson, G. (1995). Development of primer sets designed for use with PCR to amplify conserved genes from filamentous ascomycetes. Applied and Environmental Microbiology, 61, 1323–1330.GonzĂĄlez-DomĂ­nguez, E., PĂ©rez-Sierra, A., Álvarez, L. A., Abad-Campos, P., Armengol, J., & GarcĂ­a-JimĂ©nez, J. (2008). Ethiology of decline of loquat (Eriobotrya japonica) in eastern Spain. Journal of Plant Pathology, 90(2, supplement), 179.GonzĂĄlez-DomĂ­nguez, E., PĂ©rez-Sierra, A., Álvarez, L. A., LeĂłn, M., Abad-Campos, P., Armengol, J., & GarcĂ­a-JimĂ©nez, J. (2009). Agentes fĂșngicos presentes en plantaciones de nĂ­speros (Eriobotrya japonica Lindl.) con sĂ­ntomas de decaimiento en la provincia de Alicante. BoletĂ­n Sanidad Vegetal Plagas, 35, 453–467.GonzĂĄlez-DomĂ­nguez, E., Rossi, V., Armengol, J., & GarcĂ­a-JimĂ©nez, J. (2013). Effect of environmental factors on mycelial growth and conidial germination of Fusicladium eriobotryae, and the infection of loquat leaves. Plant Disease, 97, 1331–1338.GonzĂĄlez-DomĂ­nguez, E., Armengol, J., & Rossi, V. (2014). Development and validation of a weather-based model for predicting infection of loquat fruit by Fusicladium eriobotryae. Plos One, 9, e107547.Halleen, F., Schroers, H. J., Groenewald, J. Z., & Crous, P. W. (2004). Novel species of Cylindrocarpon (Neonectria) and Campylocarpon gen. nov. associated with black-foot disease of grapevines (Vitis spp). Studies in Mycology, 50, 431–455.Halleen, F., Fourie, P. H., & Crous, P. W. (2006). A review of black-foot disease of grapevine. Phytopathologia Mediterranea, 45, S55–S67.Janick, J. (2011). Predictions for loquat improvement in the next decade. Acta Horticulturae, 887, 25–30.Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., Thompson, J. D., Gibson, T. J., & Higgins, D. G. (2007). Clustal W and Clustal X version 2.0. Bioinformatics, 23, 2947–2948.Lin, S. Q. (2007). World loquat production and research with special reference to China. Acta Horticulturae, 750, 37–44.Lombard, L., Van der Merwe, N. A., Groenewald, J. Z., & Crous, P. W. (2014). Lineages in Nectriaceae: Re-evaluating the generic status of Ilyonectria and allied genera. Phytopathologia Mediterranea, 53, 515–532.Nirenberg, H. (1976). Untersuchungen ĂŒber die morphologische und biologische Differenzierung in der Fusarium-Sektion Liseola. Mitteilungen aus der Biologischen Bundesanstalt fĂŒr Land- und Forstwirtschaft, 169, 1–117.O’Donnell, K., & Cigelnik, E. (1997). Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Molecular Phylogenetics and Evolution, 7, 103–116.Petit, E., & Gubler, W. D. (2005). Characterization of Cylindrocarpon species, the cause of black foot disease of grapevine in California. Plant Disease, 89, 1051–1059.Rayner, R. W. (1970). A mycological colour chart. Kew: British Mycological Society and CAB International Mycological Institute.Read, N. D., Lichius, A., Shoji, J. Y., & Goryachev, A. B. (2009). Self-signalling and self-fusion in filamentous fungi. Current Opinion in Microbiology, 12, 608–615.Reig, C., Farina, V., Volpe, G., Mesejo, C., MartĂ­nez-Fuentes, A., Barone, F., Calabrese, F., & AgustĂ­, M. (2012). Giberellic acid and flower bud development in loquat (Eriobotrya japonica Lindl.). Scientia Horticulturae, 129, 27–31.Samuels, G. J., & Brayford, D. (1990). Variation in Nectria radicicola and its anamorph, Cylindrocarpon destructans. Mycological Research, 94, 433–442.SĂĄnchez-HernĂĄndez, M. E., Ruiz-DĂĄvila, A., PĂ©rez de Algaba, A., Blanco-LĂłpez, M. A., & Trapero-Casas, A. (1998). Occurrence and etiology of death of young olive tres in southern Spain. European Journal of Plant Pathology, 104, 347–357.SĂĄnchez-Torres, P., Hinarejos, R., & Tuset, J. J. (2009). Characterization and pathogenicity of Fusicladium eriobotryae, the fungal pathogen responsible for loquat scab. Plant Disease, 93, 1151–1157.Schroers, H. J., Zerjav, M., Munda, A., Halleen, F., & Crous, P. W. (2008). Cylindrocarpon pauciseptatum sp. nov., with notes on Cylindrocarpon species with wide, predominantly 3-septate macroconidia. Mycological Research, 112, 82–92.Soler, E., MartĂ­nez-Calvo, J., LlĂĄcer, G., & Badenes, M. L. (2007). Loquat in Spain: production and marketing. Acta Horticulturae, 750, 45–47.Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013). MEGA6: molecular evolutionary 16 genetics analysis version 6.0. Molecular Biology and Evolution, 30, 2725–2729.Tewoldemedhin, Y. T., Mazzola, M., Mostert, L., & McLeod, A. (2011). Cylindrocarpon species associated with apple tree roots in South Africa and their quantification using real-time PCR. European Journal of Plant Pathology, 129, 637–651.Vitale, A., Aiello, D., Guarnaccia, V., Perrone, G., Stea, G., & Polizzi, G. (2012). First report of root rot caused by Ilyonectria (=Neonectria) macrodidyma on avocado (Persea americana) in Italy. Journal of Phytopathology, 160, 156–159.Zhuang, W. Y., Nong, Y., & Luo, J. (2007). New species and new Chinese records of Bionectriaceae and Nectriaceae (Hypocreales, Ascomycetes) from Hubei, China. Fungal Diversity, 24, 347–357

    Long-Baseline Neutrino Facility (LBNF) and Deep Underground Neutrino Experiment (DUNE) Conceptual Design Report Volume 2: The Physics Program for DUNE at LBNF

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    The Physics Program for the Deep Underground Neutrino Experiment (DUNE) at the Fermilab Long-Baseline Neutrino Facility (LBNF) is described

    Post-Franco Theatre

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    In the multiple realms and layers that comprise the contemporary Spanish theatrical landscape, “crisis” would seem to be the word that most often lingers in the air, as though it were a common mantra, ready to roll off the tongue of so many theatre professionals with such enormous ease, and even enthusiasm, that one is prompted to wonder whether it might indeed be a miracle that the contemporary technological revolution – coupled with perpetual quandaries concerning public and private funding for the arts – had not by now brought an end to the evolution of the oldest of live arts, or, at the very least, an end to drama as we know it

    Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1.

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    In 2008, we published the first set of guidelines for standardizing research in autophagy. Since then, this topic has received increasing attention, and many scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Thus, it is important to formulate on a regular basis updated guidelines for monitoring autophagy in different organisms. Despite numerous reviews, there continues to be confusion regarding acceptable methods to evaluate autophagy, especially in multicellular eukaryotes. Here, we present a set of guidelines for investigators to select and interpret methods to examine autophagy and related processes, and for reviewers to provide realistic and reasonable critiques of reports that are focused on these processes. These guidelines are not meant to be a dogmatic set of rules, because the appropriateness of any assay largely depends on the question being asked and the system being used. Moreover, no individual assay is perfect for every situation, calling for the use of multiple techniques to properly monitor autophagy in each experimental setting. Finally, several core components of the autophagy machinery have been implicated in distinct autophagic processes (canonical and noncanonical autophagy), implying that genetic approaches to block autophagy should rely on targeting two or more autophagy-related genes that ideally participate in distinct steps of the pathway. Along similar lines, because multiple proteins involved in autophagy also regulate other cellular pathways including apoptosis, not all of them can be used as a specific marker for bona fide autophagic responses. Here, we critically discuss current methods of assessing autophagy and the information they can, or cannot, provide. Our ultimate goal is to encourage intellectual and technical innovation in the field

    Copernicus Ocean State Report, issue 6

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    The 6th issue of the Copernicus OSR incorporates a large range of topics for the blue, white and green ocean for all European regional seas, and the global ocean over 1993–2020 with a special focus on 2020

    A922 Sequential measurement of 1 hour creatinine clearance (1-CRCL) in critically ill patients at risk of acute kidney injury (AKI)

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