A cyclic-di-GMP receptor required for bacterial exopolysaccharide production

Bis-(3′,5′)-cyclic-dimeric-guanosine monophosphate (c-di-GMP) has been shown to be a global regulatory molecule that modulates the reciprocal responses of bacteria to activate either virulence pathways or biofilm formation. The mechanism of c-di-GMP signal transduction, including recognition of c-di-GMP and subsequent phenotypic regulation, remain largely uncharacterized. The key components of these regulatory pathways are the various adaptor proteins (c-di-GMP receptors). There is compelling evidence suggesting that, in addition to PilZ domains, there are other unidentified c-di-GMP receptors. Here we show that the PelD protein of Pseudomonas aeruginosa is a novel c-di-GMP receptor that mediates c-di-GMP regulation of PEL polysaccharide biosynthesis. Analysis of PelD orthologues identified a number of conserved residues that are required for c-di-GMP binding as well as synthesis of the PEL polysaccharide. Secondary structure similarities of PelD to the inhibitory site of diguanylate cyclase suggest that a common fold can act as a platform to bind c-di-GMP. The combination of a c-di-GMP binding site with a variety of output signalling motifs within one protein domain provides an explanation for the specificity for different cellular responses to this regulatory dinucleotide

Crystal electric field excitations in the quasicrystal approximant TbCd6 studied by inelastic neutron scattering

We have performed inelastic neutron scattering measurements on powder samples of the quasicrystal approximant, TbCd6, grown using isotopically enriched 112Cd. Both quasielastic scattering and distinct inelastic excitations were observed below 3 meV. The intensity of the quasielastic scattering measured in the paramagnetic phase diverges as TN∼22 K is approached from above. The inelastic excitations, and their evolution with temperature, are well characterized by the leading term, B02O02, of the crystal electric field (CEF) level scheme for local pentagonal symmetry for the rare-earth ions [S. Jazbec et al., Phys. Rev. B 93, 054208 (2016)] indicating that the Tb moment is directed primarily along the unique local pseudofivefold axis of the Tsai-type clusters. We also find good agreement between the inverse susceptibility determined from magnetization measurements using a magnetically diluted Tb0.05Y0.95Cd6 sample and that calculated using the CEF level scheme determined from the neutron measurements

Supplemental Material for: Multi-site evaluation of APEX for water quality: II. Regional parameterization

Model performance was assessed using Nash-Sutcliffe model efficiency (NSE), coefficient of determination (r2), and percent bias (PBIAS) as defined by Moriasi et al. (2007 and 2015). Threshold values indicating acceptable model performance based on these statistics are dependent on the spatial and temporal scales of the data, water quality constituents of interest, and the modeling objectives (Moriasi et al., 2015). Although some standard values have been suggested (Moriasi et al., 2007 and 2015), considerable variability exist in the published literature. For instance Ramanarayan et al. (1997) considered r2 \u3e0.5 and NSE \u3e0.40 as satisfactory for simulation of monthly surface water quality with the APEX model. Chung et al. (2002) defined r2 \u3e 0.5 and NSE \u3e 0.3 as satisfactory for monthly tile flow and NO3-N loss simulated with the Erosion Productivity Impact Calculator (EPIC) model. Wang et al. (2008) indicated r2 \u3e 0.5 and NSE \u3e 0.4 as acceptable for monthly runoff and nutrient concentrations using the APEX model. Moriasi et al. (2007) suggested NSE \u3e 0.5 with P-bias ±25% for streamflow, ±55% for sediment and ±70% for nitrogen and phosphorus for monthly values. They also indicated that NSE values can be relaxed for shorter time steps (daily events). Yin et al. (2009) reported NSE for event based runoff and sediment between 0.41-0.84 and r2 between 0.55 - 0.85. Mudgal et al. (2010) regarded r2 \u3e 0.5 and NSE \u3e 0.45 as threshold for satisfactory calibration and validation with event data

Impact of temperature and mode polarization on the acoustic phonon range in complex crystalline phases: A case study on intermetallic clathrates

The low and weakly temperature-varying lattice thermal conductivity, κL (T), in crystals with a complex unit cell such as type-I clathrates is assumed to originate from a reduced momentum and energy space available for propagative lattice vibrations, which is caused by the occurrence of low-energy optical phonon modes. In the context of ab initio self-consistent phonon (SCP) theory, it has been shown that the cubic and quartic anharmonic interactions result in a temperature-induced energy renormalization of these low-lying optical branches which contributes to the anomalous behavior of κL (T) in structurally ordered type-I clathrates [T. Tadano and S. Tsuneyuki, Phys. Rev. Lett. 120, 105901 (2018)]. By means of inelastic neutron scattering, we provide evidence for this energy renormalization in temperature, which has been resolved for transversely and longitudinally polarized phonons in the single crystal type-I clathrate Ba7.81Ge40.67Au5.33. By mapping the neutron intensity in the momentum space, we demonstrate the coherent character of the low-lying optical phonons. The overall phonon spectrum and dynamical structure factors are satisfactorily reproduced by ab initio harmonic calculations using density functional theory with the meta-GGA SCAN functional and a fully ordered structure. However, a polarization-dependent cutoff energy with opposing temperature shifts for longitudinal and transverse acoustic dispersions is experimentally observed which is not reproduced by the simulations. Anharmonicity affects the energies of the low-lying optical phonons in the transverse polarization, which compares quantitatively well with available results from SCP theory, whereas differences are observed for the longitudinal polarizatio

Maternal deaths in Pakistan : intersection of gender, class and social exclusion.

Background: A key aim of countries with high maternal mortality rates is to increase availability of competent maternal health care during pregnancy and childbirth. Yet, despite significant investment, countries with the highest burdens have not reduced their rates to the expected levels. We argue, taking Pakistan as a case study, that improving physical availability of services is necessary but not sufficient for reducing maternal mortality because gender inequities interact with caste and poverty to socially exclude certain groups of women from health services that are otherwise physically available. Methods: Using a critical ethnographic approach, two case studies of women who died during childbirth were pieced together from information gathered during the first six months of fieldwork in a village in Northern Punjab, Pakistan. Findings: Shida did not receive the necessary medical care because her heavily indebted family could not afford it. Zainab, a victim of domestic violence, did not receive any medical care because her martial family could not afford it, nor did they think she deserved it. Both women belonged to lower caste households, which are materially poor households and socially constructed as inferior. Conclusions: The stories of Shida and Zainab illustrate how a rigidly structured caste hierarchy, the gendered devaluing of females, and the reinforced lack of control that many impoverished women experience conspire to keep women from lifesaving health services that are physically available and should be at their disposal

Search for new phenomena in final states with an energetic jet and large missing transverse momentum in pp collisions at √ s = 8 TeV with the ATLAS detector

Results of a search for new phenomena in final states with an energetic jet and large missing transverse momentum are reported. The search uses 20.3 fb−1 of √ s = 8 TeV data collected in 2012 with the ATLAS detector at the LHC. Events are required to have at least one jet with pT > 120 GeV and no leptons. Nine signal regions are considered with increasing missing transverse momentum requirements between Emiss T > 150 GeV and Emiss T > 700 GeV. Good agreement is observed between the number of events in data and Standard Model expectations. The results are translated into exclusion limits on models with either large extra spatial dimensions, pair production of weakly interacting dark matter candidates, or production of very light gravitinos in a gauge-mediated supersymmetric model. In addition, limits on the production of an invisibly decaying Higgs-like boson leading to similar topologies in the final state are presente