Incorporating Multiresolution Analysis With Multiclassifiers And Decision Fusion For Hyperspectral Remote Sensing

The ongoing development and increased affordability of hyperspectral sensors are increasing their utilization in a variety of applications, such as agricultural monitoring and decision making. Hyperspectral Automated Target Recognition (ATR) systems typically rely heavily on dimensionality reduction methods, and particularly intelligent reduction methods referred to as feature extraction techniques. This dissertation reports on the development, implementation, and testing of new hyperspectral analysis techniques for ATR systems, including their use in agricultural applications where ground truthed observations available for training the ATR system are typically very limited. This dissertation reports the design of effective methods for grouping and down-selecting Discrete Wavelet Transform (DWT) coefficients and the design of automated Wavelet Packet Decomposition (WPD) filter tree pruning methods for use within the framework of a Multiclassifiers and Decision Fusion (MCDF) ATR system. The efficacy of the DWT MCDF and WPD MCDF systems are compared to existing ATR methods commonly used in hyperspectral remote sensing applications. The newly developed methods’ sensitivity to operating conditions, such as mother wavelet selection, decomposition level, and quantity and quality of available training data are also investigated. The newly developed ATR systems are applied to the problem of hyperspectral remote sensing of agricultural food crop contaminations either by airborne chemical application, specifically Glufosinate herbicide at varying concentrations applied to corn crops, or by biological infestation, specifically soybean rust disease in soybean crops. The DWT MCDF and WPD MCDF methods significantly outperform conventional hyperspectral ATR methods. For example, when detecting and classifying varying levels of soybean rust infestation, stepwise linear discriminant analysis, results in accuracies of approximately 30%-40%, but WPD MCDF methods result in accuracies of approximately 70%-80%

Incorporating Multiresolution Analysis With Multiclassifiers And Decision Fusion For Hyperspectral Remote Sensing

The ongoing development and increased affordability of hyperspectral sensors are increasing their utilization in a variety of applications, such as agricultural monitoring and decision making. Hyperspectral Automated Target Recognition (ATR) systems typically rely heavily on dimensionality reduction methods, and particularly intelligent reduction methods referred to as feature extraction techniques. This dissertation reports on the development, implementation, and testing of new hyperspectral analysis techniques for ATR systems, including their use in agricultural applications where ground truthed observations available for training the ATR system are typically very limited. This dissertation reports the design of effective methods for grouping and down-selecting Discrete Wavelet Transform (DWT) coefficients and the design of automated Wavelet Packet Decomposition (WPD) filter tree pruning methods for use within the framework of a Multiclassifiers and Decision Fusion (MCDF) ATR system. The efficacy of the DWT MCDF and WPD MCDF systems are compared to existing ATR methods commonly used in hyperspectral remote sensing applications. The newly developed methods’ sensitivity to operating conditions, such as mother wavelet selection, decomposition level, and quantity and quality of available training data are also investigated. The newly developed ATR systems are applied to the problem of hyperspectral remote sensing of agricultural food crop contaminations either by airborne chemical application, specifically Glufosinate herbicide at varying concentrations applied to corn crops, or by biological infestation, specifically soybean rust disease in soybean crops. The DWT MCDF and WPD MCDF methods significantly outperform conventional hyperspectral ATR methods. For example, when detecting and classifying varying levels of soybean rust infestation, stepwise linear discriminant analysis, results in accuracies of approximately 30%-40%, but WPD MCDF methods result in accuracies of approximately 70%-80%

Sparse representation based hyperspectral image compression and classification

Abstract This thesis presents a research work on applying sparse representation to lossy hyperspectral image compression and hyperspectral image classification. The proposed lossy hyperspectral image compression framework introduces two types of dictionaries distinguished by the terms sparse representation spectral dictionary (SRSD) and multi-scale spectral dictionary (MSSD), respectively. The former is learnt in the spectral domain to exploit the spectral correlations, and the latter in wavelet multi-scale spectral domain to exploit both spatial and spectral correlations in hyperspectral images. To alleviate the computational demand of dictionary learning, either a base dictionary trained offline or an update of the base dictionary is employed in the compression framework. The proposed compression method is evaluated in terms of different objective metrics, and compared to selected state-of-the-art hyperspectral image compression schemes, including JPEG 2000. The numerical results demonstrate the effectiveness and competitiveness of both SRSD and MSSD approaches. For the proposed hyperspectral image classification method, we utilize the sparse coefficients for training support vector machine (SVM) and k-nearest neighbour (kNN) classifiers. In particular, the discriminative character of the sparse coefficients is enhanced by incorporating contextual information using local mean filters. The classification performance is evaluated and compared to a number of similar or representative methods. The results show that our approach could outperform other approaches based on SVM or sparse representation. This thesis makes the following contributions. It provides a relatively thorough investigation of applying sparse representation to lossy hyperspectral image compression. Specifically, it reveals the effectiveness of sparse representation for the exploitation of spectral correlations in hyperspectral images. In addition, we have shown that the discriminative character of sparse coefficients can lead to superior performance in hyperspectral image classification.EM201

Streaming visualisation of quantitative mass spectrometry data based on a novel raw signal decomposition method

As data rates rise, there is a danger that informatics for high-throughput LC-MS becomes more opaque and inaccessible to practitioners. It is therefore critical that efficient visualisation tools are available to facilitate quality control, verification, validation, interpretation, and sharing of raw MS data and the results of MS analyses. Currently, MS data is stored as contiguous spectra. Recall of individual spectra is quick but panoramas, zooming and panning across whole datasets necessitates processing/memory overheads impractical for interactive use. Moreover, visualisation is challenging if significant quantification data is missing due to data-dependent acquisition of MS/MS spectra. In order to tackle these issues, we leverage our seaMass technique for novel signal decomposition. LC-MS data is modelled as a 2D surface through selection of a sparse set of weighted B-spline basis functions from an over-complete dictionary. By ordering and spatially partitioning the weights with an R-tree data model, efficient streaming visualisations are achieved. In this paper, we describe the core MS1 visualisation engine and overlay of MS/MS annotations. This enables the mass spectrometrist to quickly inspect whole runs for ionisation/chromatographic issues, MS/MS precursors for coverage problems, or putative biomarkers for interferences, for example. The open-source software is available from http://seamass.net/viz/

Selected topics in video coding and computer vision

Video applications ranging from multimedia communication to computer vision have been extensively studied in the past decades. However, the emergence of new applications continues to raise questions that are only partially answered by existing techniques. This thesis studies three selected topics related to video: intra prediction in block-based video coding, pedestrian detection and tracking in infrared imagery, and multi-view video alignment.;In the state-of-art video coding standard H.264/AVC, intra prediction is defined on the hierarchical quad-tree based block partitioning structure which fails to exploit the geometric constraint of edges. We propose a geometry-adaptive block partitioning structure and a new intra prediction algorithm named geometry-adaptive intra prediction (GAIP). A new texture prediction algorithm named geometry-adaptive intra displacement prediction (GAIDP) is also developed by extending the original intra displacement prediction (IDP) algorithm with the geometry-adaptive block partitions. Simulations on various test sequences demonstrate that intra coding performance of H.264/AVC can be significantly improved by incorporating the proposed geometry adaptive algorithms.;In recent years, due to the decreasing cost of thermal sensors, pedestrian detection and tracking in infrared imagery has become a topic of interest for night vision and all weather surveillance applications. We propose a novel approach for detecting and tracking pedestrians in infrared imagery based on a layered representation of infrared images. Pedestrians are detected from the foreground layer by a Principle Component Analysis (PCA) based scheme using the appearance cue. To facilitate the task of pedestrian tracking, we formulate the problem of shot segmentation and present a graph matching-based tracking algorithm. Simulations with both OSU Infrared Image Database and WVU Infrared Video Database are reported to demonstrate the accuracy and robustness of our algorithms.;Multi-view video alignment is a process to facilitate the fusion of non-synchronized multi-view video sequences for various applications including automatic video based surveillance and video metrology. In this thesis, we propose an accurate multi-view video alignment algorithm that iteratively aligns two sequences in space and time. To achieve an accurate sub-frame temporal alignment, we generalize the existing phase-correlation algorithm to 3-D case. We also present a novel method to obtain the ground-truth of the temporal alignment by using supplementary audio signals sampled at a much higher rate. The accuracy of our algorithm is verified by simulations using real-world sequences

A Panorama on Multiscale Geometric Representations, Intertwining Spatial, Directional and Frequency Selectivity

The richness of natural images makes the quest for optimal representations in image processing and computer vision challenging. The latter observation has not prevented the design of image representations, which trade off between efficiency and complexity, while achieving accurate rendering of smooth regions as well as reproducing faithful contours and textures. The most recent ones, proposed in the past decade, share an hybrid heritage highlighting the multiscale and oriented nature of edges and patterns in images. This paper presents a panorama of the aforementioned literature on decompositions in multiscale, multi-orientation bases or dictionaries. They typically exhibit redundancy to improve sparsity in the transformed domain and sometimes its invariance with respect to simple geometric deformations (translation, rotation). Oriented multiscale dictionaries extend traditional wavelet processing and may offer rotation invariance. Highly redundant dictionaries require specific algorithms to simplify the search for an efficient (sparse) representation. We also discuss the extension of multiscale geometric decompositions to non-Euclidean domains such as the sphere or arbitrary meshed surfaces. The etymology of panorama suggests an overview, based on a choice of partially overlapping "pictures". We hope that this paper will contribute to the appreciation and apprehension of a stream of current research directions in image understanding.Comment: 65 pages, 33 figures, 303 reference

Wavelet Based Image Coding Schemes : A Recent Survey

A variety of new and powerful algorithms have been developed for image compression over the years. Among them the wavelet-based image compression schemes have gained much popularity due to their overlapping nature which reduces the blocking artifacts that are common phenomena in JPEG compression and multiresolution character which leads to superior energy compaction with high quality reconstructed images. This paper provides a detailed survey on some of the popular wavelet coding techniques such as the Embedded Zerotree Wavelet (EZW) coding, Set Partitioning in Hierarchical Tree (SPIHT) coding, the Set Partitioned Embedded Block (SPECK) Coder, and the Embedded Block Coding with Optimized Truncation (EBCOT) algorithm. Other wavelet-based coding techniques like the Wavelet Difference Reduction (WDR) and the Adaptive Scanned Wavelet Difference Reduction (ASWDR) algorithms, the Space Frequency Quantization (SFQ) algorithm, the Embedded Predictive Wavelet Image Coder (EPWIC), Compression with Reversible Embedded Wavelet (CREW), the Stack-Run (SR) coding and the recent Geometric Wavelet (GW) coding are also discussed. Based on the review, recommendations and discussions are presented for algorithm development and implementation.Comment: 18 pages, 7 figures, journa