A New Reconstruction for Permian East Gondwana Based on Zircon Data From Ophiolite of the East Australian Great Serpentinite Belt

The Great Serpentinite Belt of eastern Australia is a similar to 1500 km long dismembered ophiolite assumed to be Cambrian based on studies of small (typically <50 m(2)) exotic meta-igneous inclusions despite contrasting ages (Cambrian-Devonian) and complex P-T histories. To overcome these issues, we studied a similar to 18 km(2) coherent block of dismembered ophiolite that provides robust geological context to sampling the ophiolite. Zircon U-Pb-Hf-O isotope and trace analyses from three plagiogranite dykes cutting massive gabbro confirm similar to 283-277 Ma ages and a mantle source. As a result, we argue older Cambrian to Devonian plagiogranite and subducted blocks were inherited from previous subduction events in eastern Australia. These findings allow us to match the Great Serpentinite Belt with the contemporary Dun Mountain ophiolite (New Zealand) and the Koh ophiolite (New Caledonia), thus supporting a new, integrated Pacific Gondwana margin paleogeography involving multiple arcs and subduction zones. Plain Language Summary Ophiolites are fragments of oceanic crust and mantle that have been thrusted onto continents by tectonics. Ophiolites provide important records of oceanic lithosphere and for assessing the timing of significant tectonic events. Previous studies of the Great Serpentinite Belt of eastern Australia, established a similar to 530 Myr age. However, studies focused on small (typically < 50 m(2)) exotic fault bounded blocks of ophiolitic material of varying geological ages and complex metamorphic histories. By focusing on an intact 18 km(2) fragment of oceanic crust with reliable geological relationships and low degrees of metamorphism, our results show this ophiolite is far younger (similar to 280 Myr old). This age overlaps with ophiolites in New Caledonia and New Zealand on what was the paleo-Pacific Gondwana margin. This new discovery leads to a new paleogeography for this period and improves geological links between eastern Australia, New Zealand, and New Caledonia.Funding was provided by UNE IRG funds to Milan and Australian Research Council Grants (Belousova, FT110100685). J. Kalmbach was sup-ported by the DAAD Rise Worldwide progra

Development and use of microsatellites markers for genetic variantion analysis, in the Namibian germplasm, both within and between populations of marama bean (Tylosema esculentum)

Tylosema esculentum (marama) has long been identified as a candidate crop for arid and semi-arid environments due to its success in these environments and the high nutritional value of the seed. Molecular markers are essential for the assessment of the levels of genetic variation present within and between populations of marama as well for future marker-assisted breeding efforts. Microsatellites were isolated using a modified FIASCO enrichment technique. Eighty pairs of primers were designed to amplify across a selected set of perfect microsatellite repeats with greater than 5 repeat units. Of the 80 primer pairs screened, 76% were able to detect polymorphism and 21% gave monomorphic bands while the other 3% gave inconsistent results. Four of the polymorphic SSR’s were used for genetic variation analysis and have proved to be useful and informative markers for assessing intra-specific and interspecific variability of marama bean. Heterozygosity (H) within and between populations of marama bean in the Namibian germplasm ranged from 0.30 to 0.74. Some of the populations had low genetic variation while others had high genetic variation

Theory of inelastic lifetimes of low-energy electrons in metals

Electron dynamics in the bulk and at the surface of solid materials are well known to play a key role in a variety of physical and chemical phenomena. In this article we describe the main aspects of the interaction of low-energy electrons with solids, and report extensive calculations of inelastic lifetimes of both low-energy electrons in bulk materials and image-potential states at metal surfaces. New calculations of inelastic lifetimes in a homogeneous electron gas are presented, by using various well-known representations of the electronic response of the medium. Band-structure calculations, which have been recently carried out by the authors and collaborators, are reviewed, and future work is addressed.Comment: 28 pages, 18 figures, to appear in Chem. Phy

Enhancing easy-plane anisotropy in bespoke Ni(II) quantum magnets

We examine the crystal structures and magnetic properties of several S = 1 Ni(II) coordination compounds, molecules and polymers, that include the bridging ligands HF2-, AF62- (A = Ti, Zr) and pyrazine or non-bridging ligands F-, SiF62-, glycine, H2O, 1-vinylimidazole, 4-methylpyrazole and 3-hydroxypyridine. Pseudo-octahedral NiN4F2, NiN4O2 or NiN4OF cores consist of equatorial Ni-N bonds that are equal to or slightly longer than the axial Ni-Lax bonds. By design, the zero-field splitting (D) is large in these systems and, in the presence of substantial exchange interactions (J), can be difficult to discriminate from magnetometry measurements on powder samples. Thus, we relied on pulsed-field magnetization in those cases and employed electron-spin resonance (ESR) to confirm D when J 0) and range from ≈ 8-25 K. This work reveals a linear correlation between the ratio d(Ni-Lax)/d(Ni-Neq) and D although the ligand spectrochemical properties may also be important. We assert that this relationship allows us to predict the type of magnetocrystalline anisotropy in tailored Ni(II) quantum magnets

Aqueous dune-like bedforms in Athabasca Valles and neighbouring locations utilized in palaeoflood reconstruction

Putative fluvial dunes have been identified within the Athabasca Valles and associated network of channels on Mars. Previous published work identified and measured bedforms in Athabasca Valles using photoclinometry methods on 2–3 m/pixel resolution Mars Orbiter Camera Narrow Angle images, and argued that these were created by an aqueous megaflood that occurred between 2 and 8 million years ago. This event is likely to have occurred due to geological activity associated with the Cerberus Fossae fracture system at the source of Athabasca Vallis. The present study has used higher resolution, 25 cm/pixel images from the Mars Reconnaissance Orbiter HiRISE camera, as well as stereo-derived digital terrain models and GIS software, to re-measure and evaluate these bedforms together with data from newly discovered neighbouring fields of bedforms. The analysis indicates that the bedforms are aqueous dunes, in that they occur in channel locations where dunes would be expected to be preserved and moreover they have geometries very similar to megaflood dunes on Earth. Dune geometries are used to estimate megaflood discharge rates, including uncertainty, which results support previous flood estimates that indicate that a flood with a discharge of ∼2 × 106m3s−1 created these bedforms

Spectroscopic factor and proton formation probability for the d3/2 proton emitter 151mLu

The quenching of the experimental spectroscopic factor for proton emission from the short-lived d3/2 isomeric state in 151mLu was a long-standing problem. In the present work, proton emission from this isomer has been reinvestigated in an experiment at the Accelerator Laboratory of the University of Jyväskylä. The proton-decay energy and half-life of this isomer were measured to be 1295(5) keV and 15.4(8) μs, respectively, in agreement with another recent study. These new experimental data can resolve the discrepancy in the spectroscopic factor calculated using the spherical WKB approximation. Using the R-matrix approach it is found that the proton formation probability indicates no significant hindrance for the proton decay of 151mLu

Whole genome sequencing for USH2A-associated disease reveals several pathogenic deep-intronic variants that are amenable to splice correction

A significant number of individuals with a rare disorder such as Usher syndrome (USH) and (non-)syndromic autosomal recessive retinitis pigmentosa (arRP) remain genetically unexplained. Therefore, we assessed subjects suspected of USH2A-associated disease and no or mono-allelic USH2A variants using whole genome sequencing (WGS) followed by an improved pipeline for variant interpretation to provide a conclusive diagnosis. One hundred subjects were screened using WGS to identify causative variants in USH2A or other USH/arRP-associated genes. In addition to the existing variant interpretation pipeline, a particular focus was put on assessing splice-affecting properties of variants, both in silico and in vitro. Also structural variants were extensively addressed. For variants resulting in pseudoexon inclusion, we designed and evaluated antisense oligonucleotides (AONs) using minigene splice assays and patient-derived photoreceptor precursor cells. Biallelic variants were identified in 49 of 100 subjects, including novel splice-affecting variants and structural variants, in USH2A or arRP/USH-associated genes. Thirteen variants were shown to affect USH2A pre-mRNA splicing, including four deep-intronic USH2A variants resulting in pseudoexon inclusion, which could be corrected upon AON treatment. We have shown that WGS, combined with a thorough variant interpretation pipeline focused on assessing pre-mRNA splicing defects and structural variants, is a powerful method to provide subjects with a rare genetic condition, a (likely) conclusive genetic diagnosis. This is essential for the development of future personalized treatments and for patients to be eligible for such treatments.</p

Heritability estimates for 361 blood metabolites across 40 genome-wide association studies

Metabolomics examines the small molecules involved in cellular metabolism. Approximately 50% of total phenotypic differences in metabolite levels is due to genetic variance, but heritability estimates differ across metabolite classes. We perform a review of all genome-wide association and (exome-) sequencing studies published between November 2008 and October 2018, and identify >800 class-specific metabolite loci associated with metabolite levels. In a twin-family cohort (N = 5117), these metabolite loci are leveraged to simultaneously estimate total heritability (h2 total), and the proportion of heritability captured by known metabolite loci (h2 Metabolite-hits) for 309 lipids and

Genome-wide meta-analysis associates HLA-DQA1/DRB1 and LPA and lifestyle factors with human longevity

Genomic analysis of longevity offers the potential to illuminate the biology of human aging. Here, using genome-wide association meta-analysis of 606,059 parents' survival, we discover two regions associated with longevity (HLA-DQA1/DRB1 and LPA). We also validate previous suggestions that APOE, CHRNA3/5, CDKN2A/B, SH2B3 and FOXO3A influence longevity. Next we show that giving up smoking, educational attainment, openness to new experience and high-density lipoprotein (HDL) cholesterol levels are most positively genetically correlated with lifespan while susceptibility to coronary artery disease (CAD), cigarettes smoked per day, lung cancer, insulin resistance and body fat are most negatively correlated. We suggest that the effect of education on lifespan is principally mediated through smoking while the effect of obesity appears to act via CAD. Using instrumental variables, we suggest that an increase of one body mass index unit reduces lifespan by 7 months while 1 year of education adds 11 months to expected lifespan

Novel genetic loci associated with hippocampal volume

The hippocampal formation is a brain structure integrally involved in episodic memory, spatial navigation, cognition and stress responsiveness. Structural abnormalities in hippocampal volume and shape are found in several common neuropsychiatric disorders. To identify the genetic underpinnings of hippocampal structure here we perform a genome-wide association study (GWAS) of 33,536 individuals and discover six independent loci significantly associated with hippocampal volume, four of them novel. Of the novel loci, three lie within genes (ASTN2, DPP4 and MAST4) and one is found 200 kb upstream of SHH. A hippocampal subfield analysis shows that a locus within the MSRB3 gene shows evidence of a localized effect along the dentate gyrus, subiculum, CA1 and fissure. Further, we show that genetic variants associated with decreased hippocampal volume are also associated with increased risk for Alzheimer's disease (rg =-0.155). Our findings suggest novel biological pathways through which human genetic variation influences hippocampal volume and risk for neuropsychiatric illness