The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants

Vascular plants appeared ~410 million years ago then diverged into several lineages of which only two survive: the euphyllophytes (ferns and seed plants) and the lycophytes (1). We report here the genome sequence of the lycophyte Selaginella moellendorffii (Selaginella), the first non-seed vascular plant genome reported. By comparing gene content in evolutionary diverse taxa, we found that the transition from a gametophyte- to sporophyte- dominated life cycle required far fewer new genes than the transition from a non-seed vascular to a flowering plant, while secondary metabolic genes expanded extensively and in parallel in the lycophyte and angiosperm lineages. Selaginella differs in post- transcriptional gene regulation, including small RNA regulation of repetitive elements, an absence of the tasiRNA pathway and extensive RNA editing of organellar genes

Simulating river discharge in a snowy region of Japan using output from a regional climate model

Snowfall amounts have fallen sharply along the eastern coast of the Sea of Japan since the mid-1980s. Toyama Prefecture, located approximately in the center of the Japan Sea region, includes high mountains of the northern Japanese Alps on three of its sides. The scarcity of meteorological observation points in mountainous areas limits the accuracy of hydrological analysis. With the development of computing technology, a dynamical downscaling method is widely applied into hydrological analysis. In this study, we numerically modeled river discharge using runoff data derived by a regional climate model (4.5-km spatial resolution) as input data to river networks (30-arcseconds resolution) for the Toyama Prefecture. The five main rivers in Toyama (the Oyabe, Sho, Jinzu, Joganji, and Kurobe rivers) were selected in this study. The river basins range in area from 368 to 2720 km2. A numerical experiment using climate comparable to that at present was conducted for the 1980s and 1990s. The results showed that seasonal river discharge could be represented and that discharge was generally overestimated compared with measurements, except for Oyabe River discharge, which was always underestimated. The average correlation coefficient for 10-year average monthly mean discharge was 0.8, with correlation coefficients ranging from 0.56 to 0.88 for all five rivers, whereas the Nash-Sutcliffe efficiency coefficient indicated that the simulation accuracy was insufficient. From the water budget analysis, it was possible to speculate that the lack of accuracy of river discharge may be caused by insufficient accuracy of precipitation simulation

The compact Selaginella genome identifies changes in gene content associated with the evolution of vascular plants

We report the genome sequence of the nonseed vascular plant, Selaginella moellendorffii, and by comparative genomics identify genes that likely played important roles in the early evolution of vascular plants and their subsequent evolutio