A Novel Endogenous Inhibitor of the Secreted Streptococcal NAD-Glycohydrolase

The Streptococcus pyogenes NAD-glycohydrolase (SPN) is a toxic enzyme that is introduced into infected host cells by the cytolysin-mediated translocation pathway. However, how S. pyogenes protects itself from the self-toxicity of SPN had been unknown. In this report, we describe immunity factor for SPN (IFS), a novel endogenous inhibitor that is essential for SPN expression. A small protein of 161 amino acids, IFS is localized in the bacterial cytoplasmic compartment. IFS forms a stable complex with SPN at a 1:1 molar ratio and inhibits SPN's NAD-glycohydrolase activity by acting as a competitive inhibitor of its β-NAD(+) substrate. Mutational studies revealed that the gene for IFS is essential for viability in those S. pyogenes strains that express an NAD-glycohydrolase activity. However, numerous strains contain a truncated allele of ifs that is linked to an NAD-glycohydrolase−deficient variant allele of spn. Of practical concern, IFS allowed the normally toxic SPN to be produced in the heterologous host Escherichia coli to facilitate its purification. To our knowledge, IFS is the first molecularly characterized endogenous inhibitor of a bacterial β-NAD(+)−consuming toxin and may contribute protective functions in the streptococci to afford SPN-mediated pathogenesis

Molecular Basis of Resistance to Muramidase and Cationic Antimicrobial Peptide Activity of Lysozyme in Staphylococci

It has been shown recently that modification of peptidoglycan by O-acetylation renders pathogenic staphylococci resistant to the muramidase activity of lysozyme. Here, we show that a Staphylococcus aureus double mutant defective in O-acetyltransferase A (OatA), and the glycopeptide resistance-associated two-component system, GraRS, is much more sensitive to lysozyme than S. aureus with the oatA mutation alone. The graRS single mutant was resistant to the muramidase activity of lysozyme, but was sensitive to cationic antimicrobial peptides (CAMPs) such as the human lysozyme-derived peptide 107R-A-W-V-A-W-R-N-R115 (LP9), polymyxin B, or gallidermin. A comparative transcriptome analysis of wild type and the graRS mutant revealed that GraRS controls 248 genes. It up-regulates global regulators (rot, sarS, or mgrA), various colonization factors, and exotoxin-encoding genes, as well as the ica and dlt operons. A pronounced decrease in the expression of the latter two operons explains why the graRS mutant is also biofilm-negative. The decrease of the dlt transcript in the graRS mutant correlates with a 46.7% decrease in the content of esterified d-alanyl groups in teichoic acids. The oatA/dltA double mutant showed the highest sensitivity to lysozyme; this mutant completely lacks teichoic acid–bound d-alanine esters, which are responsible for the increased susceptibility to CAMPs and peptidoglycan O-acetylation. Our results demonstrate that resistance to lysozyme can be dissected into genes mediating resistance to its muramidase activity (oatA) and genes mediating resistance to CAMPs (graRS and dlt). The two lysozyme activities act synergistically, as the oatA/dltA or oatA/graRS double mutants are much more susceptible to lysozyme than each of the single mutants

Causes of differences in model and satellite tropospheric warming rates

In the early twenty-first century, satellite-derived tropospheric warming trends were generally smaller than trends estimated from a large multi-model ensemble. Because observations and coupled model simulations do not have the same phasing of natural internal variability, such decadal differences in simulated and observed warming rates invariably occur. Here we analyse global-mean tropospheric temperatures from satellites and climate model simulations to examine whether warming rate differences over the satellite era can be explained by internal climate variability alone. We find that in the last two decades of the twentieth century, differences between modelled and observed tropospheric temperature trends are broadly consistent with internal variability. Over most of the early twenty-first century, however, model tropospheric warming is substantially larger than observed; warming rate differences are generally outside the range of trends arising from internal variability. The probability that multi-decadal internal variability fully explains the asymmetry between the late twentieth and early twenty-first century results is low (between zero and about 9%). It is also unlikely that this asymmetry is due to the combined effects of internal variability and a model error in climate sensitivity. We conclude that model overestimation of tropospheric warming in the early twenty-first century is partly due to systematic deficiencies in some of the post-2000 external forcings used in the model simulations

ENSO Atmospheric Teleconnections and Their Response to Greenhouse Gas Forcing

This is the final version of the article. Available from AGU via the DOI in this record.El Niño and Southern Oscillation (ENSO) is the most prominent year-to-year climate fluctuation on Earth, alternating between anomalously warm (El Niño) and cold (La Niña) sea surface temperature (SST) conditions in the tropical Pacific. ENSO exerts its impacts on remote regions of the globe through atmospheric teleconnections, affecting extreme weather events worldwide. However, these teleconnections are inherently nonlinear and sensitive to ENSO SST anomaly patterns and amplitudes. In addition, teleconnections are modulated by variability in the oceanic and atmopsheric mean state outside the tropics and by land and sea ice extent. The character of ENSO as well as the ocean mean state have changed since the 1990s, which might be due to either natural variability or anthropogenic forcing, or their combined influences. This has resulted in changes in ENSO atmospheric teleconnections in terms of precipitation and temperature in various parts of the globe. In addition, changes in ENSO teleconnection patterns have affected their predictability and the statistics of extreme events. However, the short observational record does not allow us to clearly distinguish which changes are robust and which are not. Climate models suggest that ENSO teleconnections will change because the mean atmospheric circulation will change due to anthropogenic forcing in the 21st century, which is independent of whether ENSO properties change or not. However, future ENSO teleconnection changes do not currently show strong intermodel agreement from region to region, highlighting the importance of identifying factors that affect uncertainty in future model projections.S. W. Y. is supported by the KoreaMeteorological Administration Researchand Development Program under grant KMIPA2015-2112. Wenju Cai is supported by Earth System and Climate Change Hub of the Australia National Environmental Science Programme, and Centre for Southern Hemisphere Oceans Research, an international collaboration between CSIRO and Qingdao National Laboratory for Marine Sciences and Technology. B. Dewitte acknowledges supports from FONDECYT(1151185) and from LEFE-GMMC. Dietmar Dommenget is supported by ARC Centre of Excellence for Climate System Science (CE110001028)

Miocene precipitation in Europe: Temporal trends and spatial gradients

It is known from present-day climates that both temporal and spatialvariations in precipitation can be more pronounced than those intemperature and thus influence ecosystems and human society in moresubstantial way. However, very little is known about such variations inthe past. Here we present an analysis of 206 palaeoprecipitation datafrom two twelve million year long proxy records of precipitation forSouthwest (Calatayud-Teruel basin) and Central Europe (Western andCentral Paratethys), spanning the late Early and Middle to Late Miocene(17.8-5.3 Ma) at a temporal resolution of about 80 kyr and 200 kyr,respectively. The estimates of precipitation are based on theecophysiological structure of herpetological assemblages. The resultsshow that precipitation variations in both regions have large amplitudesduring the Miocene with comparable temporal trends at longer timescales. With locally 300 mm up to more than 1000 mm more rainfall peryear than present, the early Langhian and the Tortonian were relativelywet periods, whereas the late Langhian and late Serravallian wererelatively dry, with up to 300 to 500 mm less precipitation thanpresent. The most humid time intervals were the early and middleTortonian washhouse climate periods. Overall, our data suggest that thelatitudinal precipitation gradient in Europe from the Middle to LateMiocene were highly variable, with a general tendency towards a reducedgradient relative to present day values. The gradient decreases duringcooling periods and increases during warming periods, similar to resultsfrom simulations of future climate change. Interestingly, theprecipitation gradient was reversed during the second washhouse climateperiod and the Early Messinian, which may have causes a negativehydrologic balance in the Eastern Paratethys during the latter time.Yet, our reconstructed gradient curve shows no direct correlation withthe global temperature signal from oxygen isotopes, which implies anon-linear regional response. Our results further suggest that majorfluctuations in the precipitation gradient can be responsible for shiftsin ecosystem distribution, and particularly, for faunal turnover inSouth Western Europe

Sea level extremes and compounding marine heatwaves in coastal Indonesia

Low-lying island nations like Indonesia are vulnerable to sea level Height EXtremes (HEXs). When compounded by marine heatwaves, HEXs have larger ecological and societal impact. Here we combine observations with model simulations, to investigate the HEXs and Compound Height-Heat Extremes (CHHEXs) along the Indian Ocean coast of Indonesia in recent decades. We find that anthropogenic sea level rise combined with decadal climate variability causes increased occurrence of HEXs during 2010&ndash;2017. Both HEXs and CHHEXs are driven by equatorial westerly and longshore northwesterly wind anomalies. For most HEXs, which occur during December-March, downwelling favorable northwest monsoon winds are enhanced but enhanced vertical mixing limits surface warming. For most CHHEXs, wind anomalies associated with a negative Indian Ocean Dipole (IOD) and co-occurring La Ni&ntilde;a weaken the southeasterlies and cooling from coastal upwelling during May-June and November-December. Our findings emphasize the important interplay between anthropogenic warming and climate variability in affecting regional extremes. &nbsp;</p

The tuberculosis necrotizing toxin kills macrophages by hydrolyzing NAD.

Mycobacterium tuberculosis (Mtb) induces necrosis of infected cells to evade immune responses. Recently, we found that Mtb uses the protein CpnT to kill human macrophages by secreting its C-terminal domain, named tuberculosis necrotizing toxin (TNT), which induces necrosis by an unknown mechanism. Here we show that TNT gains access to the cytosol of Mtb-infected macrophages, where it hydrolyzes the essential coenzyme NAD(+). Expression or injection of a noncatalytic TNT mutant showed no cytotoxicity in macrophages or in zebrafish zygotes, respectively, thus demonstrating that the NAD(+) glycohydrolase activity is required for TNT-induced cell death. To prevent self-poisoning, Mtb produces an immunity factor for TNT (IFT) that binds TNT and inhibits its activity. The crystal structure of the TNT-IFT complex revealed a new NAD(+) glycohydrolase fold of TNT, the founding member of a toxin family widespread in pathogenic microorganisms

Long-term climate change commitment and reversibility: an EMIC intercomparison

This paper summarizes the results of an intercomparison project with Earth System Models of Intermediate Complexity (EMICs) undertaken in support of the Intergovernmental Panel on Climate Change (IPCC) Fifth Assessment Report (AR5). The focus is on long-term climate projections designed to: (i) quantify the climate change commitment of different radiative forcing trajectories, and (ii) explore the extent to which climate change is reversible on human timescales. All commitment simulations follow the four Representative Concentration Pathways (RCPs) and their extensions to 2300. Most EMICs simulate substantial surface air temperature and thermosteric sea level rise commitment following stabilization of the atmospheric composition at year-2300 levels. The meridional overturning circulation (MOC) is weakened temporarily and recovers to near pre-industrial values in most models for RCPs 2.6–6.0. The MOC weakening is more persistent for RCP 8.5. Elimination of anthropogenic CO2 emissions after 2300 results in slowly decreasing atmospheric CO2 concentrations. At year 3000 atmospheric CO2 is still at more than half its year-2300 level in all EMICs for RCPs 4.5–8.5. Surface air temperature remains constant or decreases slightly and thermosteric sea level rise continues for centuries after elimination of CO2 emissions in all EMICs. Restoration of atmospheric CO2 from RCP to pre-industrial levels over 100–1000 years requires large artificial removal of CO2 from the atmosphere and does not result in the simultaneous return to pre-industrial climate conditions, as surface air temperature and sea level response exhibit a substantial time lag relative to atmospheric CO2

Tracking uncertainties in the causal chain from human activities to climate

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/95537/1/grl25489.pd

Have Australian rainfall and cloudiness increased due to the remote effects of Asian anthropogenic aerosols?

Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/94749/1/jgrd13340.pd