Expression capable library for studies of Neisseria gonorrhoeae, version 1.0

Background The sexually transmitted disease, gonorrhea, is a serious health problem in developed as well as in developing countries, for which treatment continues to be a challenge. The recent completion of the genome sequence of the causative agent, Neisseria gonorrhoeae, opens up an entirely new set of approaches for studying this organism and the diseases it causes. Here, we describe the initial phases of the construction of an expression-capable clone set representing the protein-coding ORFs of the gonococcal genome using a recombination-based cloning system. Results The clone set thus far includes 1672 of the 2250 predicted ORFs of the N. gonorrhoeae genome, of which 1393 (83%) are sequence-validated. Included in this set are 48 of the 61 ORFs of the gonococcal genetic island of strain MS11, not present in the sequenced genome of strain FA1090. L-arabinose-inducible glutathione-S-transferase (GST)-fusions were constructed from random clones and each was shown to express a fusion protein of the predicted size following induction, demonstrating the use of the recombination cloning system. PCR amplicons of each ORF used in the cloning reactions were spotted onto glass slides to produce DNA microarrays representing 2035 genes of the gonococcal genome. Pilot experiments indicate that these arrays are suitable for the analysis of global gene expression in gonococci. Conclusion This archived set of Gateway® entry clones will facilitate high-throughput genomic and proteomic studies of gonococcal genes using a variety of expression and analysis systems. In addition, the DNA arrays produced will allow us to generate gene expression profiles of gonococci grown in a wide variety of conditions. Together, the resources produced in this work will facilitate experiments to dissect the molecular mechanisms of gonococcal pathogenesis on a global scale, and ultimately lead to the determination of the functions of unknown genes in the genome

Metal line emission from galaxy haloes at z~1

We present a study of the metal-enriched halo gas, traced using MgII and [OII] emission lines, in two large, blind galaxy surveys - the MUSE (Multi Unit Spectroscopic Explorer) Analysis of Gas around Galaxies (MAGG) and the MUSE Ultra Deep Field (MUDF). By stacking a sample of ~600 galaxies (stellar masses M* ~10^{6-12} Msun), we characterize for the first time the average metal line emission from a general population of galaxy haloes at 0.7 <= z <= 1.5. The MgII and [OII] line emission extends farther out than the stellar continuum emission, on average out to ~25 kpc and ~45 kpc, respectively, at a surface brightness (SB) level of 10^{-20} erg/s/cm2/arcsec2. The radial profile of the MgII SB is shallower than that of the [OII], suggesting that the resonant MgII emission is affected by dust and radiative transfer effects. The [OII] to MgII SB ratio is ~3 over ~20-40 kpc, also indicating a significant in situ origin of the extended metal emission. The average SB profiles are intrinsically brighter by a factor ~2-3 and more radially extended by a factor of ~1.3 at 1.0 < z <= 1.5 than at 0.7 <= z <= 1.0. The average extent of the metal emission also increases independently with increasing stellar mass and in overdense group environments. When considering individual detections, we find extended [OII] emission up to ~50 kpc around ~30-40 percent of the group galaxies, and extended (~30-40 kpc) MgII emission around two z~1 quasars in groups, which could arise from outflows or environmental processes.Comment: 24 pages, 21 figures, 2 tables, accepted for publication in MNRA

The KMOS Cluster Survey (KCS). I. The Fundamental Plane and the Formation Ages of Cluster Galaxies at Redshift 1.4 < Z < 1.6

We present the analysis of the fundamental plane (FP) for a sample of 19 massive red-sequence galaxies (${M}_{\star }\gt 4\times {10}^{10}$ ${M}_{\odot }$) in three known overdensities at $1.39\lt z\lt 1.61$ from the K-band Multi-object Spectrograph (KMOS) Cluster Survey, a guaranteed-time program with spectroscopy from the KMOS at the VLT and imaging from the Hubble Space Telescope. As expected, we find that the FP zero-point in B band evolves with redshift, from the value 0.443 of Coma to −0.10 ± 0.09, −0.19 ± 0.05, and −0.29 ± 0.12 for our clusters at z = 1.39, z = 1.46, and z = 1.61, respectively. For the most massive galaxies ($\mathrm{log}{M}_{\star }/{M}_{\odot }\gt 11$) in our sample, we translate the FP zero-point evolution into a mass-to-light-ratio M/L evolution, finding ${\rm{\Delta }}\mathrm{log}M/{L}_{B}=(-0.46\pm 0.10)z$, ${\rm{\Delta }}\mathrm{log}M/{L}_{B}=(-0.52\pm 0.07)z$, to ${\rm{\Delta }}\mathrm{log}M/{L}_{B}=(-0.55\pm 0.10)z$, respectively. We assess the potential contribution of the galaxy structural and stellar velocity dispersion evolution to the evolution of the FP zero-point and find it to be ~6%–35% of the FP zero-point evolution. The rate of M/L evolution is consistent with galaxies evolving passively. Using single stellar population models, we find an average age of ${2.33}_{-0.51}^{+0.86}$ Gyr for the $\mathrm{log}{M}_{\star }/{M}_{\odot }\gt 11$ galaxies in our massive and virialized cluster at z = 1.39, ${1.59}_{-0.62}^{+1.40}$ Gyr in a massive but not virialized cluster at z = 1.46, and ${1.20}_{-0.47}^{+1.03}$ Gyr in a protocluster at z = 1.61. After accounting for the difference in the age of the universe between redshifts, the ages of the galaxies in the three overdensities are consistent within the errors, with possibly a weak suggestion that galaxies in the most evolved structure are older

Comprehensive evaluation of stool-based diagnostic methods and benzimidazole resistance markers to assess drug efficacy and detect the emergence of anthelmintic resistance : a Starworms study protocol

Background : To work towards reaching the WHO goal of eliminating soil-transmitted helminth (STH) infections as a public health problem, the total number of children receiving anthelmintic drugs has strongly increased over the past few years. However, as drug pressure levels rise, the development of anthelmintic drug resistance (AR) is more and more likely to appear. Currently, any global surveillance system to monitor drug efficacy and the emergence of possible AR is lacking. Consequently, it remains unclear to what extent the efficacy of drugs may have dropped and whether AR is already present. The overall aim of this study is to recommend the best diagnostic methods to monitor drug efficacy and molecular markers to assess the emergence of AR in STH control programs. Methods : A series of drug efficacy trials will be performed in four STH endemic countries with varying drug pressure (Ethiopia and Brazil: low drug pressure, Lao PDR: moderate drug pressure and Tanzania: high drug pressure). These trials are designed to assess the efficacy of a single oral dose of 400 mg albendazole (ALB) against STH infections in school-aged children (SAC) by microscopic (duplicate Kato-Katz thick smear, Mini-FLOTAC and FECPAK(G2)) and molecular stool-based diagnostic methods (quantitative PCR (qPCR)). Data will be collected on the cost of the materials used, as well as the time required to prepare and examine stool samples for the different diagnostic methods. Following qPCR, DNA samples will also be submitted for pyrosequencing to assess the presence and prevalence of single nucleotide polymorphisms (SNPs) in the beta-tubulin gene. These SNPs are known to be linked to AR in animal STHs. Discussion : The results obtained by these trials will provide robust evidence regarding the cost-efficiency and diagnostic performance of the different stool-based diagnostic methods for the assessment of drug efficacy in control programs. The assessment of associations between the frequency of SNPs in the beta-tubulin gene and the history of drug pressure and drug efficacy will allow the validation of these SNPs as a marker for AR in human STHs

The KMOS Cluster Survey (KCS) II - The Effect of Environment on the Structural Properties of Massive Cluster Galaxies at Redshift 1.391.611.39 1.61

We present results on the structural properties of massive passive galaxies in three clusters at 1.39<z<1.61 from the KMOS Cluster Survey. We measure light-weighted and mass-weighted sizes from optical and near-infrared Hubble Space Telescope imaging and spatially resolved stellar mass maps. The rest-frame R-band sizes of these galaxies are a factor of ∼2−3 smaller than their local counterparts. The slopes of the relation between the stellar mass and the light-weighted size are consistent with recent studies in clusters and the field. Their mass-weighted sizes are smaller than the rest frame R-band sizes, with an average mass-weighted to light-weighted size ratio that varies between ∼0.45 and 0.8 among the clusters. We find that the median light-weighted size of the passive galaxies in the two more evolved clusters is ∼24% larger than for field galaxies, independent of the use of circularized effective radii or semi-major axes. These two clusters also show a smaller size ratio than the less evolved cluster, which we investigate using color gradients to probe the underlying M∗/LH160 gradients. The median color gradients are ∇z−H∼−0.4 mag dex−1, twice the local value. Using stellar populations models, these gradients are best reproduced by a combination of age and metallicity gradients. Our results favor the minor merger scenario as the dominant process responsible for the observed galaxy properties and the environmental differences at this redshift. The environmental differences support that clusters experience accelerated structural evolution compared to the field, likely via an epoch of enhanced minor merger activity during cluster assembly

Sizes, colour gradients and resolved stellar mass distributions for the massive cluster galaxies in XMMUJ2235-2557 at z = 1.39

We analyse the sizes, colour gradients and resolved stellar mass distributions for 36 massive and passive galaxies in the cluster XMMUJ2235-2557 at z = 1.39 using optical and near-infrared Hubble Space Telescope (HST) imaging. We derive light-weighted Sérsic fits in five HST bands (i775, z850, Y105, J125, H160), and find that the size decreases by ~20 per cent going from i775 to H160 band, consistent with recent studies. We then generate spatially resolved stellar mass maps using an empirical relationship between M*/LH160 and (z850- H160) and use these to derive mass-weighted Sérsic fits: the mass-weighted sizes are ~41 per cent smaller than their rest-frame r-band counterparts compared with an average of ~12 per cent at z ~ 0. We attribute this evolution to the evolution in the M*/LH160 and colour gradient. Indeed, as expected, the ratio of mass-weighted to light-weighted size is correlated with the M*/L gradient, but is also mildly correlated with the mass surface density and mass-weighted size. The colour gradients (∇z- H) are mostly negative, with a median value of ~0.45 mag dex-1, twice the local value. The evolution is caused by an evolution in age gradients along the semimajor axis (a), with ∇age = dlog (age)/dlog (a) ~- 0.33, while the survival of weaker colour gradients in old, local galaxies implies that metallicity gradients are also required, with ∇Z = dlog (Z)/dlog (a) ~- 0.2. This is consistent with recent observational evidence for the inside-out growth of passive galaxies at high redshift, and favours a gradual mass growth mechanism, such as minor mergers

Standalone vertex finding in the ATLAS muon spectrometer

A dedicated reconstruction algorithm to find decay vertices in the ATLAS muon spectrometer is presented. The algorithm searches the region just upstream of or inside the muon spectrometer volume for multi-particle vertices that originate from the decay of particles with long decay paths. The performance of the algorithm is evaluated using both a sample of simulated Higgs boson events, in which the Higgs boson decays to long-lived neutral particles that in turn decay to bbar b final states, and pp collision data at √s = 7 TeV collected with the ATLAS detector at the LHC during 2011

Measurements of Higgs boson production and couplings in diboson final states with the ATLAS detector at the LHC

Measurements are presented of production properties and couplings of the recently discovered Higgs boson using the decays into boson pairs, H →γ γ, H → Z Z∗ →4l and H →W W∗ →lνlν. The results are based on the complete pp collision data sample recorded by the ATLAS experiment at the CERN Large Hadron Collider at centre-of-mass energies of √s = 7 TeV and √s = 8 TeV, corresponding to an integrated luminosity of about 25 fb−1. Evidence for Higgs boson production through vector-boson fusion is reported. Results of combined fits probing Higgs boson couplings to fermions and bosons, as well as anomalous contributions to loop-induced production and decay modes, are presented. All measurements are consistent with expectations for the Standard Model Higgs boson

Measurement of the top quark-pair production cross section with ATLAS in pp collisions at \sqrt{s}=7\TeV

A measurement of the production cross-section for top quark pairs(\ttbar) in $pp$ collisions at \sqrt{s}=7 \TeV is presented using data recorded with the ATLAS detector at the Large Hadron Collider. Events are selected in two different topologies: single lepton (electron $e$ or muon $\mu$) with large missing transverse energy and at least four jets, and dilepton ($ee$, $\mu\mu$ or $e\mu$) with large missing transverse energy and at least two jets. In a data sample of 2.9 pb-1, 37 candidate events are observed in the single-lepton topology and 9 events in the dilepton topology. The corresponding expected backgrounds from non-\ttbar Standard Model processes are estimated using data-driven methods and determined to be $12.2 \pm 3.9$ events and $2.5 \pm 0.6$ events, respectively. The kinematic properties of the selected events are consistent with SM \ttbar production. The inclusive top quark pair production cross-section is measured to be \sigmattbar=145 \pm 31 ^{+42}_{-27} pb where the first uncertainty is statistical and the second systematic. The measurement agrees with perturbative QCD calculations.Comment: 30 pages plus author list (50 pages total), 9 figures, 11 tables, CERN-PH number and final journal adde