5,359 research outputs found
Mol Cell Proteomics
Protein biochips have a great potential in future parallel processing of complex samples as a research tool and in diagnostics. For the generation of protein biochips, highly automated technologies have been developed for cDNA expression library production, high throughput protein expression, large scale analysis of proteins, and protein microarray generation. Using this technology, we present here a strategy to identify potential autoantigens involved in the pathogenesis of alopecia areata, an often chronic disease leading to the rapid loss of scalp hair. Only little is known about the putative autoantigen(s) involved in this process. By combining protein microarray technology with the use of large cDNA expression libraries, we profiled the autoantibody repertoire of sera from alopecia areata patients against a human protein array consisting of 37,200 redundant, recombinant human proteins. The data sets obtained from incubations with patient sera were compared with control sera from clinically healthy persons and to background incubations with anti-human IgG antibodies. From these results, a smaller protein subset was generated and subjected to qualitative and quantitative validation on highly sensitive protein microarrays to identify novel alopecia areata-associated autoantigens. Eight autoantigens were identified by protein chip technology and were successfully confirmed by Western blot analysis. These autoantigens were arrayed on protein microarrays to generate a disease-associated protein chip. To confirm the specificity of the results obtained, sera from patients with psoriasis or hand and foot eczema as well as skin allergy were additionally examined on the disease-associated protein chip. By using alopecia areata as a model for an autoimmune disease, our investigations show that the protein microarray technology has potential for the identification and evaluation of autoantigens as well as in diagnosis such as to differentiate alopecia areata from other skin diseases
Single \pi^- production in np collisions for excess energies up to 90 MeV
The quasifree reaction np\to pp\pim was studied in a kinematically complete
experiment by bombarding a liquid hydrogen target with a deuteron beam of
momentum 1.85 GeV/c and analyzing the data along the lines of the spectator
model. In addition to the three charged ejectiles the spectator proton was also
detected in the large-acceptance time-of-flight spectrometer COSY-TOF. It was
identified by its momentum and flight direction thus yielding access to the
Fermi motion of the bound neutron and to the effective neutron 4-momentum
vector which differed from event to event. A range of almost 90
MeV excess energy above threshold was covered. Energy dependent angular
distributions, invariant mass spectra as well as fully covered Dalitz plots
were deduced. Sizeable FSI effects were found as were contributions of
and partial waves. The behavior of the elementary cross section
close to threshold is discussed in view of new cross section
data. In comparison with existing literature data the results provide a
sensitive test of the spectator model.Comment: 21 pages, 9 figures, 4 tables, submitted to EPJ
Production of mesons in proton-proton collisions
The cross section for the production of mesons in proton-proton
collisions has been measured in a previously unexplored region of incident
energies. Cross sections were extracted at 92 MeV and 173 MeV excess energy,
respectively. The angular distribution of the at =173 MeV is
strongly anisotropic, demonstrating the importance of partial waves beyond pure
s-wave production at this energy.Comment: 12 pages, 4 figures submitted to Physics Letters B v2: figure 1
added, discussion detailing the data analysis, figure 3 (fig. 2 in v1)
modified in line styles and systematic errors displayed on dat
Measurement of the Eta Production in Proton Proton Collisions with the COSY Time of Flight Spectrometer
The reaction pp -> pp eta was measured at excess energies of 15 and 41 MeV at
an external target of the Juelich Cooler Synchrotron COSY with the Time of
Flight Spectrometer. About 25000 events were measured for the excess energy of
15 MeV and about 8000 for 41 MeV. Both protons of the process pp eta were
detected with an acceptance of nearly 100% and the eta was reconstructed by the
missing mass technique. For both excess energies the angular distributions are
found to be nearly isotropic. In the invariant mass distributions strong
deviations from the pure phase space distributions are seen.Comment: 15 pages, 14 figures, 4 table
Sequencing of BAC pools by different next generation sequencing platforms and strategies
<p>Abstract</p> <p>Background</p> <p>Next generation sequencing of BACs is a viable option for deciphering the sequence of even large and highly repetitive genomes. In order to optimize this strategy, we examined the influence of read length on the quality of Roche/454 sequence assemblies, to what extent Illumina/Solexa mate pairs (MPs) improve the assemblies by scaffolding and whether barcoding of BACs is dispensable.</p> <p>Results</p> <p>Sequencing four BACs with both FLX and Titanium technologies revealed similar sequencing accuracy, but showed that the longer Titanium reads produce considerably less misassemblies and gaps. The 454 assemblies of 96 barcoded BACs were improved by scaffolding 79% of the total contig length with MPs from a non-barcoded library.</p> <p>Assembly of the unmasked 454 sequences without separation by barcodes revealed chimeric contig formation to be a major problem, encompassing 47% of the total contig length. Masking the sequences reduced this fraction to 24%.</p> <p>Conclusion</p> <p>Optimal BAC pool sequencing should be based on the longest available reads, with barcoding essential for a comprehensive assessment of both repetitive and non-repetitive sequence information. When interest is restricted to non-repetitive regions and repeats are masked prior to assembly, barcoding is non-essential. In any case, the assemblies can be improved considerably by scaffolding with non-barcoded BAC pool MPs.</p
Production of Lambda and Sigma^0 hyperons in proton-proton collisions
This paper reports results on simultaneous measurements of the reaction
channels pp -> pK+\Lambda and pp -> pK+\Sigma^0 at excess energies of 204, 239,
and 284 MeV (\Lambda) and 127, 162, and 207 MeV (\Sigma^0). Total and
differential cross sections are given for both reactions. It is concluded from
the measured total cross sections that the high energy limit of the cross
section ratio is almost reached at an excess energy of only about 200 MeV. From
the differential distributions observed in the overall CMS as well as in the
Jackson and helicity frames, a significant contribution of interfering nucleon
resonances to the \Lambda production mechanism is concluded while resonant
\Sigma^0-production seems to be of lesser importance and takes place only
through specific partial waves of the entrance channel. The data also indicate
that kaon exchange plays a minor role in the case of \Lambda- but an important
role for \Sigma^0-production. Thus the peculiar energy dependence of the
\Lambda-to-\Sigma^0 cross section ratio appears in a new light as its
explanation requires more than mere differences between the p\Lambda and the
p\Sigma^0 final state interaction. The data provide a benchmark for theoretical
models already available or yet to come.Comment: 18 pages, 10 figures; accepted by The European Physical Journal A
(EPJ A
Deep exclusive electroproduction off the proton at CLAS
The exclusive electroproduction of above the resonance region was
studied using the Large Acceptance Spectrometer () at
Jefferson Laboratory by scattering a 6 GeV continuous electron beam off a
hydrogen target. The large acceptance and good resolution of ,
together with the high luminosity, allowed us to measure the cross section for
the process in 140 (, , ) bins:
, 1.6 GeV GeV and 0.1 GeV
GeV. For most bins, the statistical accuracy is on the order of a few
percent. Differential cross sections are compared to two theoretical models,
based either on hadronic (Regge phenomenology) or on partonic (handbag diagram)
degrees of freedom. Both can describe the gross features of the data reasonably
well, but differ strongly in their ingredients. If the handbag approach can be
validated in this kinematical region, our data contain the interesting
potential to experimentally access transversity Generalized Parton
Distributions.Comment: 18pages, 21figures,2table
TESLA Technical Design Report Part III: Physics at an e+e- Linear Collider
The TESLA Technical Design Report Part III: Physics at an e+e- Linear
ColliderComment: 192 pages, 131 figures. Some figures have reduced quality. Full
quality figures can be obtained from http://tesla.desy.de/tdr. Editors -
R.-D. Heuer, D.J. Miller, F. Richard, P.M. Zerwa
Measurement of the cross-section and charge asymmetry of bosons produced in proton-proton collisions at TeV with the ATLAS detector
This paper presents measurements of the and cross-sections and the associated charge asymmetry as a
function of the absolute pseudorapidity of the decay muon. The data were
collected in proton--proton collisions at a centre-of-mass energy of 8 TeV with
the ATLAS experiment at the LHC and correspond to a total integrated luminosity
of 20.2~\mbox{fb^{-1}}. The precision of the cross-section measurements
varies between 0.8% to 1.5% as a function of the pseudorapidity, excluding the
1.9% uncertainty on the integrated luminosity. The charge asymmetry is measured
with an uncertainty between 0.002 and 0.003. The results are compared with
predictions based on next-to-next-to-leading-order calculations with various
parton distribution functions and have the sensitivity to discriminate between
them.Comment: 38 pages in total, author list starting page 22, 5 figures, 4 tables,
submitted to EPJC. All figures including auxiliary figures are available at
https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/STDM-2017-13
Search for direct stau production in events with two hadronic tau-leptons in root s=13 TeV pp collisions with the ATLAS detector
A search for the direct production of the supersymmetric partners ofτ-leptons (staus) in final stateswith two hadronically decayingτ-leptons is presented. The analysis uses a dataset of pp collisions corresponding to an integrated luminosity of139fb−1, recorded with the ATLAS detector at the LargeHadron Collider at a center-of-mass energy of 13 TeV. No significant deviation from the expected StandardModel background is observed. Limits are derived in scenarios of direct production of stau pairs with eachstau decaying into the stable lightest neutralino and oneτ-lepton in simplified models where the two staumass eigenstates are degenerate. Stau masses from 120 GeV to 390 GeV are excluded at 95% confidencelevel for a massless lightest neutralino
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