14 research outputs found

    The BioPAX community standard for pathway data sharing

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    Biological Pathway Exchange (BioPAX) is a standard language to represent biological pathways at the molecular and cellular level and to facilitate the exchange of pathway data. The rapid growth of the volume of pathway data has spurred the development of databases and computational tools to aid interpretation; however, use of these data is hampered by the current fragmentation of pathway information across many databases with incompatible formats. BioPAX, which was created through a community process, solves this problem by making pathway data substantially easier to collect, index, interpret and share. BioPAX can represent metabolic and signaling pathways, molecular and genetic interactions and gene regulation networks. Using BioPAX, millions of interactions, organized into thousands of pathways, from many organisms are available from a growing number of databases. This large amount of pathway data in a computable form will support visualization, analysis and biological discovery. © 2010 Nature America, Inc. All rights reserved

    Creating and curating an archive: Bury St Edmunds and its Anglo-Saxon past

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    This contribution explores the mechanisms by which the Benedictine foundation of Bury St Edmunds sought to legitimise and preserve their spurious pre-Conquest privileges and holdings throughout the Middle Ages. The archive is extraordinary in terms of the large number of surviving registers and cartularies which contain copies of Anglo-Saxon charters, many of which are wholly or partly in Old English. The essay charts the changing use to which these ancient documents were put in response to threats to the foundation's continued enjoyment of its liberties. The focus throughout the essay is to demonstrate how pragmatic considerations at every stage affects the development of the archive and the ways in which these linguistically challenging texts were presented, re-presented, and represented during the Abbey’s history

    The BioPAX community standard for pathway data sharing

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    Biological Pathway Exchange (BioPAX) is a standard language to represent biological pathways at the molecular and cellular level and to facilitate the exchange of pathway data. The rapid growth of the volume of pathway data has spurred the development of databases and computational tools to aid interpretation; however, use of these data is hampered by the current fragmentation of pathway information across many databases with incompatible formats. BioPAX, which was created through a community process, solves this problem by making pathway data substantially easier to collect, index, interpret and share. BioPAX can represent metabolic and signaling pathways, molecular and genetic interactions and gene regulation networks. Using BioPAX, millions of interactions, organized into thousands of pathways, from many organisms are available from a growing number of databases. This large amount of pathway data in a computable form will support visualization, analysis and biological discovery. © 2010 Nature America, Inc. All rights reserved

    The biopax community standard for pathway data sharing

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    BioPAX (Biological Pathway Exchange) is a standard language to represent biological pathways at the molecular and cellular level. Its major use is to facilitate the exchange of pathway data (http://www.biopax.org). Pathway data captures our understanding of biological processes, but its rapid growth necessitates development of databases and computational tools to aid interpretation. However, the current fragmentation of pathway information across many databases with incompatible formats presents barriers to its effective use. BioPAX solves this problem by making pathway data substantially easier to collect, index, interpret and share. BioPAX can represent metabolic and signaling pathways, molecular and genetic interactions and gene regulation networks. BioPAX was created through a community process. Through BioPAX, millions of interactions organized into thousands of pathways across many organisms, from a growing number of sources, are available. Thus, large amounts of pathway data are available in a computable form to support visualization, analysis and biological discovery

    The BioPAX community standard for pathway data sharing

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    Scotland and Anglo-Scottish Border Writing

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    Gildas

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    International audienceGildas est le premier auteur britannique à témoigner des événements postérieurs au départ des légions romaines. C'est par l'analyse de ses modèles, principalement bibliques, et de ses buts que son récit historique allusif, si frustrant, peut être compris et interprété comme un témoignage de premier plan

    Tall tales from the archive

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    The administrative documents preserved in archives tell stories which are shaped by their institutional and governmental context, and are as deceptive and full of invention as more self-consciously literary works. Medieval archives contain a vast repository of historical narratives which, despite their fictional components and bureaucratic manipulation, nevertheless provide vivid insights into everyday life. The rhetorical conventions of such bureaucratic documents as pardons, petitions and appeals represent forms of historical literature which are cultural productions of equal significance to the chronicle or the epic poem. But, unlike court poetry or chronicles, the archives tell us a great deal about the life of ordinary people. In the wake of the discussion of the archive by Foucault and Derrida, the archive has been seen as a symbol of power and a means of control, but often the archive is the chief means by which non-elite groups find their voice
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