229 research outputs found

    3D-printed system optimizing dissolution of hyperpolarized gaseous species for micro-sized NMR

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    International audienceDissolution of hyperpolarized species in liquids of interest for NMR is often hampered by the presence of bubbles that degrade the field homogeneity. Here a device constituted by a bubble pump and a miniaturized NMR cell fitting both inside the narrow bore of an NMR magnet is built by 3D printing. 129Xe NMR experiments performed with hyperpolarized xenon reveal high and homogeneous dissolution of the gas in water

    Assessing the capability of three different altimetry satellite missions to observe the Northern Current by using a high-resolution model

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    Over the last 3 decades, satellite altimetry has observed sea surface height variations, providing a regular monitoring of the surface ocean circulation. Altimetry measurements have an intrinsic signal-to-noise ratio that limits the spatial scales of the currents that can be captured. However, the recent progress made on both altimetry sensors and data processing allows us to observe smaller geophysical signals, offering new perspectives in coastal areas where these structures are important. In this methodological study, we assess the ability of three altimeter missions with three different technologies to capture the Northern Current (northwestern Mediterranean Sea) and its variability, namely Jason-2 (Ku-band low-resolution-mode altimeter, launched in 2008), SARAL/AltiKa (Ka-band low-resolution-mode altimeter, launched in 2013) and Sentinel-3A (synthetic aperture radar altimeter, launched in 2016). Therefore, we use a high-resolution regional model as a reference. We focus along the French coast of Provence, where we first show that the model is very close to the observations of high-frequency radars and gliders in terms of surface current estimates. In the model, the Northern Current is observed 15–20 km from the coast on average, with a mean core velocity of 0.39 m s−1. Its signature in terms of sea level consists of a drop whose mean value at 6.14∘ E is 6.9 cm, extending over 20 km. These variations show a clear seasonal pattern, but high-frequency signals are also present most of the time. In comparison, in 1 Hz altimetry data, the mean sea level drop associated with the Northern Current is overestimated by 3.0 cm for Jason-2, but this overestimation is significantly less with SARAL/AltiKa and Sentinel-3A (0.3 and 1.4 cm respectively). In terms of corresponding sea level variability, Jason-2 and SARAL altimetry estimates are larger than the model reference (+1.3 and +1 cm respectively), whereas Sentinel-3A shows closer values (−0.4 cm). When we derive geostrophic surface currents from the satellite sea level variations without any data filtering, in comparison to the model, the standard deviations of the velocity values are also very different from one mission to the other (3.7 times too large for Jason-2 but 2.4 and 2.9 times too large for SARAL and Sentinel-3A respectively). When low-pass filtering altimetry sea level data with different cutoff wavelengths, the best agreement between the model and the altimetry distributions of velocity values are obtained with a 60, 30 and 40–50 km cutoff wavelength for Jason-2, SARAL and Sentinel-3A data respectively. This study shows that using a high-resolution model as a reference for altimetry data allows us not only to illustrate how the advances in the performances of altimeters and in the data processing improve the observation of coastal currents but also to quantify the corresponding gain.</p

    The differential regulation of Lck kinase phosphorylation sites by CD45 is critical for T cell receptor signaling responses

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    SummaryThe molecular mechanisms whereby the CD45 tyrosine phosphatase (PTPase) regulates T cell receptor (TCR) signaling responses remain to be elucidated. To investigate this question, we have reconstituted CD45 (encoded by Ptprc)-deficient mice, which display severe defects in thymic development, with five different expression levels of transgenic CD45RO, or with mutant PTPase null or PTPase-low CD45R0. Whereas CD45 PTPase activity was absolutely required for the reconstitution of thymic development, only 3% of wild-type CD45 activity restored T cell numbers and normal cytotoxic T cell responses. Lowering the CD45 expression increased CD4 lineage commitment. Peripheral T cells with very low activity of CD45 phosphatase displayed reduced TCR signaling, whereas intermediate activity caused hyperactivation of CD4+ and CD8+ T cells. These results are explained by a rheostat mechanism whereby CD45 differentially regulates the negatively acting pTyr-505 and positively acting pTyr-394 p56lck tyrosine kinase phosphorylation sites. We propose that high wild-type CD45 expression is necessary to dephosphorylate p56lck pTyr-394, suppressing CD4 T+ cell lineage commitment and hyperactivity

    Characterizing emergency admissions of patients with sickle cell crisis in NHS brent: observational study

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    OBJECTIVES: To characterize emergency admissions for patients with sickle cell crisis in NHS Brent and to determine which patients and practices may benefit most from primary care intervention. DESIGN: Observational study SETTING: Emergency departments attended by residents of the London borough of Brent PARTICIPANTS: Patients with sickle cell disease registered with a general practitioner (GP) in the borough of Brent MAIN OUTCOME MEASURES: Analysis of admissions between January 2008 and July 2010 that included length of stay (average and <2 days versus ≥2 days) by age group and registered GP practice. RESULTS: Thirty six percent of sickle cell disease admission spells resulted in a length of stay of less than two days. Seventy four percent of total bed days are associated with patients with more than one admission during the period of analysis, i.e. multiple admissions. Two general practices in Brent were identified as having the highest number of patients admitted to the emergency department for sickle cell crisis and may benefit most from primary care intervention. DISCUSSION: Patients with short length of stay and multiple admissions may be potentially amenable to primary care intervention. The practices which have the highest numbers of sickle cell disease patients who frequently seek emergency care will be earmarked for an education intervention designed to help further engage general practitioners in the care and management of their sickle cell patients

    SnoopCGH: software for visualizing comparative genomic hybridization data

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    Summary: Array-based comparative genomic hybridization (CGH) technology is used to discover and validate genomic structural variation, including copy number variants, insertions, deletions and other structural variants (SVs). The visualization and summarization of the array CGH data outputs, potentially across many samples, is an important process in the identification and analysis of SVs. We have developed a software tool for SV analysis using data from array CGH technologies, which is also amenable to short-read sequence data

    Sintomas de doenças sexualmente transmissíveis em adultos: prevalência e fatores de risco

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    OBJECTIVE: To evaluate the prevalence of sexually transmitted disease (STD) symptoms and associated risk factors in an adult population. METHODS: A population-based cross-sectional study was conducted among residents of the metropolitan area of Pelotas, Brazil. Subjects were 20 years old or more. A self-administered questionnaire was used to gather information about sexual behavior and STD symptoms. Multivariate analysis was undertaken using logistic regression. RESULTS: The prevalence of STDs was 13.5%. A higher risk of STDs was found in non-white younger women with more sexual partners and who did not use condoms in their last sexual relationship. Among men, early initiation of sexual activity and anal sex were positively associated with the outcome. Higher risks were found among women with lower schooling. CONCLUSIONS: The present study identified a significant prevalence of STD symptoms in this population and showed differences in risk factors according to gender. Since many STDs are asymptomatic and symptomatic cases are often either not perceived as disease by patients or not diagnosed in health services, the actual prevalence may be even greater. The study results suggest that cohabitation with a sexual partner does not reduce the risk of STDs in this population and showed sex differences for risk factors, both of which should be taken into account while approaching this issue.OBJETIVO: Medir a prevalência de sintomas de doenças sexualmente transmissíveis (DST) e seus fatores de risco em uma população adulta. MÉTODOS: Estudo transversal de base populacional. A amostra foi constituída de adultos com 20 anos ou mais de idade, da zona urbana de Pelotas, RS. Utilizou-se questionário auto-aplicado para obtenção de informações de comportamento sexual e de sintomatologia para DST. A análise ajustada foi realizada por regressão logística. RESULTADOS: A prevalência de sintomas de DST foi de 13,5%. Pessoas do sexo feminino, mais jovens e cor não branca, bem como aquelas que não usaram preservativo na última relação sexual e que tiveram maior número de parceiros apresentaram maior risco para DST. Após estratificar por sexo, idade precoce de iniciação sexual e prática de sexo anal, as DST mostraram-se associadas com o desfecho apenas para os homens, e a menor escolaridade mostrou-se associada com o desfecho apenas para as mulheres. CONCLUSÕES: Este estudo mostrou uma prevalência importante de sintomas de DST. Levando-se em conta que muitas DST são assintomáticas e casos sintomáticos freqüentemente não são percebidos como patológicos pelos doentes e/ou não são diagnosticados pelos serviços, considera-se que o problema é ainda maior. Os resultados contribuíram também para aprofundar a discussão sobre o fato de viver com companheiro sexual não ser fator de proteção para a presença de sintomas dessas doenças e indicaram diferenças nos fatores de risco entre os sexos, sendo necessário considerar estas peculiaridades na abordagem deste assunto

    <i>Gaia</i> Data Release 1. Summary of the astrometric, photometric, and survey properties

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    Context. At about 1000 days after the launch of Gaia we present the first Gaia data release, Gaia DR1, consisting of astrometry and photometry for over 1 billion sources brighter than magnitude 20.7. Aims. A summary of Gaia DR1 is presented along with illustrations of the scientific quality of the data, followed by a discussion of the limitations due to the preliminary nature of this release. Methods. The raw data collected by Gaia during the first 14 months of the mission have been processed by the Gaia Data Processing and Analysis Consortium (DPAC) and turned into an astrometric and photometric catalogue. Results. Gaia DR1 consists of three components: a primary astrometric data set which contains the positions, parallaxes, and mean proper motions for about 2 million of the brightest stars in common with the HIPPARCOS and Tycho-2 catalogues – a realisation of the Tycho-Gaia Astrometric Solution (TGAS) – and a secondary astrometric data set containing the positions for an additional 1.1 billion sources. The second component is the photometric data set, consisting of mean G-band magnitudes for all sources. The G-band light curves and the characteristics of ∼3000 Cepheid and RR-Lyrae stars, observed at high cadence around the south ecliptic pole, form the third component. For the primary astrometric data set the typical uncertainty is about 0.3 mas for the positions and parallaxes, and about 1 mas yr−1 for the proper motions. A systematic component of ∼0.3 mas should be added to the parallax uncertainties. For the subset of ∼94 000 HIPPARCOS stars in the primary data set, the proper motions are much more precise at about 0.06 mas yr−1. For the secondary astrometric data set, the typical uncertainty of the positions is ∼10 mas. The median uncertainties on the mean G-band magnitudes range from the mmag level to ∼0.03 mag over the magnitude range 5 to 20.7. Conclusions. Gaia DR1 is an important milestone ahead of the next Gaia data release, which will feature five-parameter astrometry for all sources. Extensive validation shows that Gaia DR1 represents a major advance in the mapping of the heavens and the availability of basic stellar data that underpin observational astrophysics. Nevertheless, the very preliminary nature of this first Gaia data release does lead to a number of important limitations to the data quality which should be carefully considered before drawing conclusions from the data

    Modeling factors influencing the demand for emergency department services in ontario: a comparison of methods

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    <p>Abstract</p> <p>Background</p> <p>Emergency departments are medical treatment facilities, designed to provide episodic care to patients suffering from acute injuries and illnesses as well as patients who are experiencing sporadic flare-ups of underlying chronic medical conditions which require immediate attention. Supply and demand for emergency department services varies across geographic regions and time. Some persons do not rely on the service at all whereas; others use the service on repeated occasions. Issues regarding increased wait times for services and crowding illustrate the need to investigate which factors are associated with increased frequency of emergency department utilization. The evidence from this study can help inform policy makers on the appropriate mix of supply and demand targeted health care policies necessary to ensure that patients receive appropriate health care delivery in an efficient and cost-effective manner. The purpose of this report is to assess those factors resulting in increased demand for emergency department services in Ontario. We assess how utilization rates vary according to the severity of patient presentation in the emergency department. We are specifically interested in the impact that access to primary care physicians has on the demand for emergency department services. Additionally, we wish to investigate these trends using a series of novel regression models for count outcomes which have yet to be employed in the domain of emergency medical research.</p> <p>Methods</p> <p>Data regarding the frequency of emergency department visits for the respondents of Canadian Community Health Survey (CCHS) during our study interval (2003-2005) are obtained from the National Ambulatory Care Reporting System (NACRS). Patients' emergency department utilizations were linked with information from the Canadian Community Health Survey (CCHS) which provides individual level medical, socio-demographic, psychological and behavioral information for investigating predictors of increased emergency department utilization. Six different multiple regression models for count data were fitted to assess the influence of predictors on demand for emergency department services, including: Poisson, Negative Binomial, Zero-Inflated Poisson, Zero-Inflated Negative Binomial, Hurdle Poisson, and Hurdle Negative Binomial. Comparison of competing models was assessed by the Vuong test statistic.</p> <p>Results</p> <p>The CCHS cycle 2.1 respondents were a roughly equal mix of males (50.4%) and females (49.6%). The majority (86.2%) were young-middle aged adults between the ages of 20-64, living in predominantly urban environments (85.9%), with mid-high household incomes (92.2%) and well-educated, receiving at least a high-school diploma (84.1%). Many participants reported no chronic disease (51.9%), fell into a small number (0-5) of ambulatory diagnostic groups (62.3%), and perceived their health status as good/excellent (88.1%); however, were projected to have high Resource Utilization Band levels of health resource utilization (68.2%). These factors were largely stable for CCHS cycle 3.1 respondents. Factors influencing demand for emergency department services varied according to the severity of triage scores at initial presentation. For example, although a non-significant predictor of the odds of emergency department utilization in high severity cases, access to a primary care physician was a statistically significant predictor of the likelihood of emergency department utilization (OR: 0.69; 95% CI OR: 0.63-0.75) and the rate of emergency department utilization (RR: 0.57; 95% CI RR: 0.50-0.66) in low severity cases.</p> <p>Conclusion</p> <p>Using a theoretically appropriate hurdle negative binomial regression model this unique study illustrates that access to a primary care physician is an important predictor of both the odds and rate of emergency department utilization in Ontario. Restructuring primary care services, with aims of increasing access to undersupplied populations may result in decreased emergency department utilization rates by approximately 43% for low severity triage level cases.</p

    Impact of lopinavir/ritonavir use on antiretroviral resistance in recent clinical practice

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    Objectives This observational study was requested by French health authorities to determine the impact of lopinavir/ritonavir (Kaletra®) on antiretroviral resistance in clinical practice. Virological failures of lopinavir/ritonavir and their effects on the resistance to protease inhibitors and reverse transcriptase inhibitors were evaluated in protease inhibitor-experienced patients.Patients and methods Virological failure was defined as an HIV-1 plasma viral load &gt;50 copies/mL after at least 3 months of lopinavir/ritonavir-containing antiretroviral therapy. For all patients, a resistance genotypic test was available at failure and before lopinavir/ritonavir treatment. Data from 72 patients with inclusion criteria were studied. Results The mean viral load at baseline was 4 log10 copies/mL (1.6–6.5). Mutations in the protease gene significantly selected between baseline and failure were L10V, K20R, L33F, M36I, I47V, I54V, A71V and I85V (P &lt; 0.05). Patients who had more than seven protease inhibitor mutations at baseline showed a significantly increased risk of occurrence of protease inhibitor mutations. The proportion of viruses susceptible to atazanavir, fosamprenavir and darunavir decreased significantly between baseline and failure (P &lt; 0.05). Among patients with a virus susceptible to atazanavir at day 0, 26% (n = 14) exhibited a virus resistant or possibly resistant at the time of failure. This proportion was 32% (n = 16) for fosamprenavir and 16% (n = 7) for darunavir. Conclusions A darunavir-based regimen appears to be a sequential option in the case of lopinavir/ritonavir failure. To compare and determine the best treatment sequencing, similar studies should be performed for darunavir/ritonavir and atazanavir/ritonavir
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