309 research outputs found
Exceptional electronic transport and quantum oscillations in thin bismuth crystals grown inside van der Waals materials
Confining materials to two-dimensional forms changes the behavior of
electrons and enables new devices. However, most materials are challenging to
produce as uniform thin crystals. Here, we present a new synthesis approach
where crystals are grown in a nanoscale mold defined by atomically-flat van der
Waals (vdW) materials. By heating and compressing bismuth in a vdW mold made of
hexagonal boron nitride (hBN), we grow ultraflat bismuth crystals less than 10
nanometers thick. Due to quantum confinement, the bismuth bulk states are
gapped, isolating intrinsic Rashba surface states for transport studies. The
vdW-molded bismuth shows exceptional electronic transport, enabling the
observation of Shubnikov-de Haas quantum oscillations originating from the
(111) surface state Landau levels, which have eluded previous studies. By
measuring the gate-dependent magnetoresistance, we observe multi-carrier
quantum oscillations and Landau level splitting, with features originating from
both the top and bottom surfaces. Our vdW-mold growth technique establishes a
platform for electronic studies and control of bismuth's Rashba surface states
and topological boundary modes. Beyond bismuth, the vdW-molding approach
provides a low-cost way to synthesize ultrathin crystals and directly integrate
them into a vdW heterostructure
A structural study of hcp and liquid iron under shock compression up to 275 GPa
We combine nanosecond laser shock compression with \emph{in-situ} picosecond
X-ray diffraction to provide structural data on iron up to 275 GPa. We
constrain the extent of hcp-liquid coexistence, the onset of total melt, and
the structure within the liquid phase. Our results indicate that iron, under
shock compression, melts completely by 258(8) GPa. A coordination number
analysis indicates that iron is a simple liquid at these pressure-temperature
conditions. We also perform texture analysis between the ambient
body-centered-cubic (bcc) , and the hexagonal-closed-packed (hcp)
high-pressure phase. We rule out the Rong-Dunlop orientation
relationship (OR) between the and phases. However, we
cannot distinguish between three other closely related ORs: Burger's,
Mao-Bassett-Takahashi, and Potter's OR. The solid-liquid coexistence region is
constrained from a melt onset pressure of 225(3) GPa from previously published
sound speed measurements and full melt (246.5(1.8)-258(8) GPa) from X-ray
diffraction measurements, with an associated maximum latent heat of melting of
623 J/g. This value is lower than recently reported theoretical estimates and
suggests that the contribution to the earth's geodynamo energy budget from heat
release due to freezing of the inner core is smaller than previously thought.
Melt pressures for these nanosecond shock experiments are consistent with gas
gun shock experiments that last for microseconds, indicating that the melt
transition occurs rapidly
Photoinduced charge recombination in dipolar D-A-A photonic liquid crystal polymorphs
A hexylalkoxy dipolar D–A–A molecule [7-(4-N,N-(bis(4-hexyloxyphenyl)amino)phenyl)-2,1,3-(benzothia-diazol-4-yl)methylene]propane-dinitrile, (C6-TPA-BT-CN) has been synthesized and the photophysics studied via femtosecond transient absorption spectroscopy (FsTA) in toluene and in amorphous and liquid crystalline spherulite thin films. Two spherulite macromolecular crystalline phases (banded, and non-banded) were observed through concentration dependent, solution processing techniques and are birefringent with a negative sign of elongation. A dramatic change in the electronic absorption from blue in amorphous films to green in spherulites was observed, and the molecular orientation was determined through the combined analysis of polarized light microscopy, X-ray diffraction, and scanning electron microscopy. FsTA was performed on amorphous films and show complex charge recombination dynamics, and a Stark effect, characterized from the combined TPA+˙ and [BT-CN]−˙ spectroscopic signatures at 450 nm and 510 nm and identified through spectroelectrochemistry. Radical cation dynamics of TPA+˙ was observed selectively at 750 nm with >503.3 ps (18%) recombination kinetics resulting in a rather significant yield of free charge carriers in amorphous films and consistent with previous reports on energetically disordered blend films. However, photoexcitation on large, non-banded spherulites areas (>250 μm) reveal average monoexponential charge recombination lifetimes of 169.2 ps from delocalized states similar to those observed in amorphous films and are 5× longer-lived than previous reports [Chang et al., J. Am. Chem. Soc., 2013, 135, 8790] of a related methyl-DPAT-BT-CN whose amorphous thin films were prepared through vapor deposition. Thus, the correlation between the microstructure of the blend film and the photoinduced radical pair dynamics described here is critical for developing a fundamental understanding of how dipolar states contribute to the charge carrier yield in a disordered energy system
A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.
We conducted a multi-stage, genome-wide association study of bladder cancer with a primary scan of 591,637 SNPs in 3,532 affected individuals (cases) and 5,120 controls of European descent from five studies followed by a replication strategy, which included 8,382 cases and 48,275 controls from 16 studies. In a combined analysis, we identified three new regions associated with bladder cancer on chromosomes 22q13.1, 19q12 and 2q37.1: rs1014971, (P = 8 × 10⁻¹²) maps to a non-genic region of chromosome 22q13.1, rs8102137 (P = 2 × 10⁻¹¹) on 19q12 maps to CCNE1 and rs11892031 (P = 1 × 10⁻⁷) maps to the UGT1A cluster on 2q37.1. We confirmed four previously identified genome-wide associations on chromosomes 3q28, 4p16.3, 8q24.21 and 8q24.3, validated previous candidate associations for the GSTM1 deletion (P = 4 × 10⁻¹¹) and a tag SNP for NAT2 acetylation status (P = 4 × 10⁻¹¹), and found interactions with smoking in both regions. Our findings on common variants associated with bladder cancer risk should provide new insights into the mechanisms of carcinogenesis
A multi-stage genome-wide association study of bladder cancer identifies multiple susceptibility loci.
We conducted a multi-stage, genome-wide association study of bladder cancer with a primary scan of 591,637 SNPs in 3,532 affected individuals (cases) and 5,120 controls of European descent from five studies followed by a replication strategy, which included 8,382 cases and 48,275 controls from 16 studies. In a combined analysis, we identified three new regions associated with bladder cancer on chromosomes 22q13.1, 19q12 and 2q37.1: rs1014971, (P = 8 × 10⁻¹²) maps to a non-genic region of chromosome 22q13.1, rs8102137 (P = 2 × 10⁻¹¹) on 19q12 maps to CCNE1 and rs11892031 (P = 1 × 10⁻⁷) maps to the UGT1A cluster on 2q37.1. We confirmed four previously identified genome-wide associations on chromosomes 3q28, 4p16.3, 8q24.21 and 8q24.3, validated previous candidate associations for the GSTM1 deletion (P = 4 × 10⁻¹¹) and a tag SNP for NAT2 acetylation status (P = 4 × 10⁻¹¹), and found interactions with smoking in both regions. Our findings on common variants associated with bladder cancer risk should provide new insights into the mechanisms of carcinogenesis
Chromosomal-level assembly of the Asian Seabass genome using long sequence reads and multi-layered scaffolding
We report here the ~670 Mb genome assembly of the Asian seabass (Lates calcarifer), a tropical marine teleost. We used long-read sequencing augmented by transcriptomics, optical and genetic mapping along with shared synteny from closely related fish species to derive a chromosome-level assembly with a contig N50 size over 1 Mb and scaffold N50 size over 25 Mb that span ~90% of the genome. The population structure of L. calcarifer species complex was analyzed by re-sequencing 61 individuals representing various regions across the species' native range. SNP analyses identified high levels of genetic diversity and confirmed earlier indications of a population stratification comprising three clades with signs of admixture apparent in the South-East Asian population. The quality of the Asian seabass genome assembly far exceeds that of any other fish species, and will serve as a new standard for fish genomics
Six Years of Chandra Observations of Supernova Remnants
We present a review of the first six years of Chandra X-ray Observatory
observations of supernova remnants. From the official "first-light" observation
of Cassiopeia A that revealed for the first time the compact remnant of the
explosion, to the recent million-second spectrally-resolved observation that
revealed new details of the stellar composition and dynamics of the original
explosion, Chandra observations have provided new insights into the supernova
phenomenon. We present an admittedly biased overview of six years of these
observations, highlighting new discoveries made possible by Chandra's unique
capabilities.Comment: 82 pages, 28 figures, for the book Astrophysics Update
Raf Activation Is Regulated by Tyrosine 510 Phosphorylation in Drosophila
The proto-oncoprotein Raf is pivotal for mitogen-activated protein kinase (MAPK) signaling, and its aberrant activation has been implicated in multiple human cancers. However, the precise molecular mechanism of Raf activation, especially for B-Raf, remains unresolved. By genetic and biochemical studies, we demonstrate that phosphorylation of tyrosine 510 is essential for activation of Drosophila Raf (Draf), which is an ortholog of mammalian B-Raf. Y510 of Draf is phosphorylated by the c-src homolog Src64B. Acidic substitution of Y510 promotes and phenylalanine substitution impairs Draf activation without affecting its enzymatic activity, suggesting that Y510 plays a purely regulatory role. We further show that Y510 regulates Draf activation by affecting the autoinhibitory interaction between the N- and C-terminal fragments of the protein. Finally, we show that Src64B is required for Draf activation in several developmental processes. Together, these results suggest a novel mechanism of Raf activation via Src-mediated tyrosine phosphorylation. Since Y510 is a conserved residue in the kinase domain of all Raf proteins, this mechanism is likely evolutionarily conserved
The genomes of two key bumblebee species with primitive eusocial organization
Background: The shift from solitary to social behavior is one of the major evolutionary transitions. Primitively eusocial bumblebees are uniquely placed to illuminate the evolution of highly eusocial insect societies. Bumblebees are also invaluable natural and agricultural pollinators, and there is widespread concern over recent population declines in some species. High-quality genomic data will inform key aspects of bumblebee biology, including susceptibility to implicated population viability threats. Results: We report the high quality draft genome sequences of Bombus terrestris and Bombus impatiens, two ecologically dominant bumblebees and widely utilized study species. Comparing these new genomes to those of the highly eusocial honeybee Apis mellifera and other Hymenoptera, we identify deeply conserved similarities, as well as novelties key to the biology of these organisms. Some honeybee genome features thought to underpin advanced eusociality are also present in bumblebees, indicating an earlier evolution in the bee lineage. Xenobiotic detoxification and immune genes are similarly depauperate in bumblebees and honeybees, and multiple categories of genes linked to social organization, including development and behavior, show high conservation. Key differences identified include a bias in bumblebee chemoreception towards gustation from olfaction, and striking differences in microRNAs, potentially responsible for gene regulation underlying social and other traits. Conclusions: These two bumblebee genomes provide a foundation for post-genomic research on these key pollinators and insect societies. Overall, gene repertoires suggest that the route to advanced eusociality in bees was mediated by many small changes in many genes and processes, and not by notable expansion or depauperation
Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas
Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN
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