Quantitative Mapping of Strains and Young Modulus Based on Phase-Sensitive OCT

In this chapter we consider mapping of local strains and tissue elasticity in optical coherence tomography (OCT) based on analysis of phase-sensitive OCT scans. Conventional structural OCT scans correspond to spatially resolved mapping of the backscattering intensity of the probing optical beam. Deeper analysis of such sequentially acquired multiple OCT scans can be used to extract additional information about motion of scatterers in the examined region. Such detailed analysis of OCT scans has already resulted in creation of OCT-based visualization of blood microcirculation, which has been implemented in several commercially available devices, especially for ophthalmic applications. Another functional extension of OCT emerging in recent years is the OCT-based elastography, i.e., mapping of local strains and elastic properties in the imaged region. Here, we describe the main principles of local strain mapping in phase-sensitive OCT with a special focus on the recently proposed efficient vector method of estimation of interframe phase-variation gradients. The initially performed mapping of local strains is then used for realization of quantitative compressional elastography, i.e., mapping of the Young modulus and obtaining stress-strain dependences for the studied samples. The discussed principles are illustrated by simulated and experimental examples of elastographic OCT-based visualization. The presented elastographic principles are rather general and can be used in a wide area of biomedical and technical applications

Inter-calibration of Infrared Channels of Geostationary Meteorological Satellite Imagers

This article examines a method of inter-calibration for MSU-GS imager of the Russian Geostationary Earth Orbit (GEO) satellite Elektro-L No. 2. Since the launch (December 11, 2015), the satellite's radiation cooler has been operating in an abnormal mode, so the calibration of the IR channels of the MSU-GS imager differed from that pre-flight and, in general, could have a daily variability. To ensure the satellite's further operation in orbit, it was necessary to calibrate imager channels at a frequency that would allow to identify daily calibration course to detect and compensate its sources. In order to do this, we have developed a special method of GEO-GEO inter-calibration. The calibration of MSU-GS was performed using SEVIRI imager installed on the GEO satellite Meteosat-10. SEVIRI was chosen as a reference instrument because its spectral channels are similar to those of MSU-GS. The MSU-GS was calibrated according to the regressions calculated from the simultaneous images of the field of regard selected between the sub-satellite points. The dynamic brightness temperature range was determined by deep convective clouds in high troposphere and warm ocean surface. Using the proposed method of inter-calibration, it was possible to confirm the absence of a significant daily variation of the calibration since November 2017. The amplitude of the variation smoothly increases from ~0.2 K at high (~300 K) BTs to ~1.0 K when the brightness temperature decreased to 200 K. These estimates allow the use of the Fourier spectrometer IKFS-2 installed on the Russian Low-Earth-Orbit (LEO) satellite Meteor-M No. 2 to verify the developed GEO-GEO scheme of inter-calibration. Despite the specifics of the situation on board Elektro-L No. 2, the proposed method of GEO-GEO inter-calibration can be applied to radiometers of other neighboring satellites that differ in SSP and spatial resolution

Towards targeted colorectal cancer biopsy based on tissue morphology assessment by compression optical coherence elastography

Identifying the precise topography of cancer for targeted biopsy in colonoscopic examination is a challenge in current diagnostic practice. For the first time we demonstrate the use of compression optical coherence elastography (C-OCE) technology as a new functional OCT modality for differentiating between cancerous and non-cancerous tissues in colon and detecting their morphological features on the basis of measurement of tissue elastic properties. The method uses pre-determined stiffness values (Young’s modulus) to distinguish between different morphological structures of normal (mucosa and submucosa), benign tumor (adenoma) and malignant tumor tissue (including cancer cells, gland-like structures, cribriform gland-like structures, stromal fibers, extracellular mucin). After analyzing in excess of fifty tissue samples, a threshold stiffness value of 520 kPa was suggested above which areas of colorectal cancer were detected invariably. A high Pearson correlation (r =0.98; p <0.05), and a negligible bias (0.22) by good agreement of the segmentation results of C-OCE and histological (reference standard) images was demonstrated, indicating the efficiency of C-OCE to identify the precise localization of colorectal cancer and the possibility to perform targeted biopsy. Furthermore, we demonstrated the ability of C-OCE to differentiate morphological subtypes of colorectal cancer – low-grade and high-grade colorectal adenocarcinomas, mucinous adenocarcinoma, and cribriform patterns. The obtained ex vivo results highlight prospects of C-OCE for high-level colon malignancy detection. The future endoscopic use of C-OCE will allow targeted biopsy sampling and simultaneous rapid analysis of the heterogeneous morphology of colon tumors

Emission Monitoring Mobile Experiment (EMME): An overview and first results of the St. Petersburg megacity campaign 2019

Global climate change is one of the most important scientific, societal and economic contemporary challenges. Fundamental understanding of the major processes driving climate change is the key problem which is to be solved not only on a global but also on a regional scale. The accuracy of regional climate modelling depends on a number of factors. One of these factors is the adequate and comprehensive information on the anthropogenic impact which is highest in industrial regions and areas with dense population – modern megacities. Megacities are not only “heat islands”, but also significant sources of emissions of various substances into the atmosphere, including greenhouse and reactive gases. In 2019, the mobile experiment EMME (Emission Monitoring Mobile Experiment) was conducted within the St. Petersburg agglomeration (Russia) aiming to estimate the emission intensity of greenhouse (CO$_{2}$, CH$_{4}$) nd reactive (CO, NO$_{x}$) gases for St. Petersburg, which is the largest northern megacity. St. Petersburg State University (Russia), Karlsruhe Institute of Technology (Germany) and the University of Bremen (Germany) jointly ran this experiment. The core instruments of the campaign were two portable Bruker EM27/SUN Fourier transform infrared (FTIR) spectrometers which were used for ground-based remote sensing measurements of the total column amount of CO$_{2}$, CH$_{4}$ and CO at upwind and downwind locations on opposite sides of the city. The NO$_{2}$ tropospheric column amount was observed along a circular highway around the city by continuous mobile measurements of scattered solar visible radiation with an OceanOptics HR4000 spectrometer using the differential optical absorption spectroscopy (DOAS) technique. Simultaneously, air samples were collected in air bags for subsequent laboratory analysis. The air samples were taken at the locations of FTIR observations at the ground level and also at altitudes of about 100 m when air bags were lifted by a kite (in case of suitable landscape and favourable wind conditions). The entire campaign consisted of 11 mostly cloudless days of measurements in March–April 2019. Planning of measurements for each day included the determination of optimal location for FTIR spectrometers based on weather forecasts, combined with the numerical modelling of the pollution transport in the megacity area. The real-time corrections of the FTIR operation sites were performed depending on the actual evolution of the megacity NO$_{x}$ plume as detected by the mobile DOAS observations. The estimates of the St. Petersburg emission intensities for the considered greenhouse and reactive gases were obtained by coupling a box model and the results of the EMME observational campaign using the mass balance approach. The CO$_{2}$ emission flux for St. Petersburg as an area source was estimated to be 89 ± 28 ktkm$^{-2}$ yr $^{-2}$ , which is 2 times higher than the corresponding value in the EDGAR database. The experiment revealed the CH$_{4}$ emission flux of 135 ± 68 tkm $^{-2}$ yr $^{-1}$, which is about 1 order of magnitude greater than the value reported by the official inventories of St. Petersburg emissions (∼ 25 tkm$^{-2}$ yr $^{-1}$ or 2017). At the same time, for the urban territory of St. Petersburg, both the EMME experiment and the official inventories for 2017 give similar results for the CO anthropogenic flux (251 ± 104 tkm $^{-2}$ yr $^{-1}$ s. 410 tkm $^{-2}$ yr $^{-1}$) nd for the NO$_{x}$ anthropogenic flux (66 ± 28 tkm$^{-2}$ yr $^{-1}$ vs. 69 tkm $^{-2}$ yr $^{-1}$)

Challenges in QCD matter physics - The Compressed Baryonic Matter experiment at FAIR

Substantial experimental and theoretical efforts worldwide are devoted to explore the phase diagram of strongly interacting matter. At LHC and top RHIC energies, QCD matter is studied at very high temperatures and nearly vanishing net-baryon densities. There is evidence that a Quark-Gluon-Plasma (QGP) was created at experiments at RHIC and LHC. The transition from the QGP back to the hadron gas is found to be a smooth cross over. For larger net-baryon densities and lower temperatures, it is expected that the QCD phase diagram exhibits a rich structure, such as a first-order phase transition between hadronic and partonic matter which terminates in a critical point, or exotic phases like quarkyonic matter. The discovery of these landmarks would be a breakthrough in our understanding of the strong interaction and is therefore in the focus of various high-energy heavy-ion research programs. The Compressed Baryonic Matter (CBM) experiment at FAIR will play a unique role in the exploration of the QCD phase diagram in the region of high net-baryon densities, because it is designed to run at unprecedented interaction rates. High-rate operation is the key prerequisite for high-precision measurements of multi-differential observables and of rare diagnostic probes which are sensitive to the dense phase of the nuclear fireball. The goal of the CBM experiment at SIS100 (sqrt(s_NN) = 2.7 - 4.9 GeV) is to discover fundamental properties of QCD matter: the phase structure at large baryon-chemical potentials (mu_B > 500 MeV), effects of chiral symmetry, and the equation-of-state at high density as it is expected to occur in the core of neutron stars. In this article, we review the motivation for and the physics programme of CBM, including activities before the start of data taking in 2022, in the context of the worldwide efforts to explore high-density QCD matter.Comment: 15 pages, 11 figures. Published in European Physical Journal

Search for dark matter produced in association with bottom or top quarks in √s = 13 TeV pp collisions with the ATLAS detector

A search for weakly interacting massive particle dark matter produced in association with bottom or top quarks is presented. Final states containing third-generation quarks and miss- ing transverse momentum are considered. The analysis uses 36.1 fb−1 of proton–proton collision data recorded by the ATLAS experiment at √s = 13 TeV in 2015 and 2016. No significant excess of events above the estimated backgrounds is observed. The results are in- terpreted in the framework of simplified models of spin-0 dark-matter mediators. For colour- neutral spin-0 mediators produced in association with top quarks and decaying into a pair of dark-matter particles, mediator masses below 50 GeV are excluded assuming a dark-matter candidate mass of 1 GeV and unitary couplings. For scalar and pseudoscalar mediators produced in association with bottom quarks, the search sets limits on the production cross- section of 300 times the predicted rate for mediators with masses between 10 and 50 GeV and assuming a dark-matter mass of 1 GeV and unitary coupling. Constraints on colour- charged scalar simplified models are also presented. Assuming a dark-matter particle mass of 35 GeV, mediator particles with mass below 1.1 TeV are excluded for couplings yielding a dark-matter relic density consistent with measurements