Principles of Bacterial Cell-Size Determination Revealed by Cell-Wall Synthesis Perturbations

SummaryAlthough bacterial cell morphology is tightly controlled, the principles of size regulation remain elusive. In Escherichia coli, perturbation of cell-wall synthesis often results in similar morphologies, making it difficult to deconvolve the complex genotype-phenotype relationships underlying morphogenesis. Here we modulated cell width through heterologous expression of sequences encoding the essential enzyme PBP2 and through sublethal treatments with drugs that inhibit PBP2 and the MreB cytoskeleton. We quantified the biochemical and biophysical properties of the cell wall across a wide range of cell sizes. We find that, although cell-wall chemical composition is unaltered, MreB dynamics, cell twisting, and cellular mechanics exhibit systematic large-scale changes consistent with altered chirality and a more isotropic cell wall. This multiscale analysis enabled identification of distinct roles for MreB and PBP2, despite having similar morphological effects when depleted. Altogether, our results highlight the robustness of cell-wall synthesis and physical principles dictating cell-size control

Opini Komunitas Warga Sekitar Tentang Maraknya Pedagang Kaki Lima (PKL) (Studi Deskriptif Analitis Tentang Opini Komunitas Warga Sekitar Pkl – Tamansari, Kepatihan, dan Dalem Kaum – Kota Bandung)

Penelitian dengan judul “Opini komunitas warga sekitar tentang maraknya Pedagang Kaki Lima (PKL)” ini, dilakukan oleh pengajar/dosen tetap Fakultas Ilmu Komunikasi (FIK). Permasalahan penelitian adalah tentang bagaimana opini komunitas warga sekitar PKL mengenai keamanan, ketertiban, ketenangan, Kenyamanan, keindahan, kebersihan, dan keramah-tamahan (7“K”) akibat maraknya PKL. Sasaran strategis dalam penelitian ini adalah komunitas warga di sekitar lingkungan PKL Jalan Kepatihan, Dalem Kaum, dan Tamansari.Tujuan penelitian adalah untuk mengetahui, mengkaji, dan menganalisis faktor 7“K” yang dirasakan komunitas warga sekitar, akibat maraknya PKL, sehingga tanggapan yang diekspresikan mereka dapat menjadi masukan bagi Humas Pemerintah Kota Bandung dalam upaya mensosialisasikan kebijakan pemerintah tentang PKL khususnya dalam merumuskan konsep community relations berkaitan dengan 7 “K” yang dirasakan oleh komunitas warga sekitar terhadap maraknya PKL tersebut. Kesimpulan hasil penelitian ini adalah: pada umumnya opini komunitas warga sekitar terhadap maraknya PKL, dilihat dari faktor 7“K” sangatlah bervariasi di antara opini positif dan negatif, Dalam arti, untuk responden tertentu penilaiannya sangat relatif tergantung dari persepsi masing-masing dan atas dasar pengalaman masing-masing dengan para PKL tersebut. Dengan demikian tidak sepenuhnya berada pada kecenderungan tertentu yang bersifat negatif atau positif. Oleh karena itu dari opini tersebut selanjutnya dapat berkembang untuk diyakini tentang adanya kemungkinan di antara kedua belah pihak saling membina hubungan, dan pemerintah memfasilitasi hubungan tersebut dalam kebijakan-kebijakannya

In vitro degradation behaviour of biodegradable soy plastics : effects of crosslinking with glyoxal and thermal treatment

In-vitro degradation of soy-derived protein materials, non-crosslinked (SItp), crosslinked with glyoxal (X-SItp) or submitted to heat treatment (24TT-SItp), was studied with either an isotonic saline solution without enzymatic activity or containing bacterial collagenase. The changes in weight of the samples during the in-vitro degradation were studied and compared with the variations of the mechanical properties. The weight loss of SItp, X-SItp and 24TT-SItp were more pronounced when using collagenase. After 24 h of immersion, SItp lost 10.6% of its initial weight whereas 0.6X-SItp and 24TT-SItp lost 1.7 and 5.7%, respectively. In every case, the weight loss was found to be directly proportional to the respective crosslinking degree: 2.4% for SItp, 44% for 0.6X-SItp and 27.8% for 24TT-SItp. Consequently, the susceptibility of the soy materials towards enzymatic degradation could be controlled by varying the degree of crosslinking of the samples. The mechanical properties proved to be more sensitive to the loss of plasticiser (glycerol) during immersion than to the degradation of the polymeric matrices. After 24 h of immersion all the materials presented an increase in stiffness and brittleness due to the complete leaching of glycerol from the matrices. SItp, X-SItp and 24TT-SItp proved to be suitable materials for either load-bearing applications or temporary applications such as tissue engineering scaffolds or drug delivery systems.PRAXIS XX

Mechanistic Insights Into the Cross-Feeding of Ruminococcus gnavus and Ruminococcus bromii on Host and Dietary Carbohydrates

Dietary and host glycans shape the composition of the human gut microbiota with keystone carbohydrate-degrading species playing a critical role in maintaining the structure and function of gut microbial communities. Here, we focused on two major human gut symbionts, the mucin-degrader Ruminococcus gnavus ATCC 29149, and R. bromii L2-63, a keystone species for the degradation of resistant starch (RS) in human colon. Using anaerobic individual and co-cultures of R. bromii and R. gnavus grown on mucin or starch as sole carbon source, we showed that starch degradation by R. bromii supported the growth of R. gnavus whereas R. bromii did not benefit from mucin degradation by R. gnavus. Further we analyzed the growth (quantitative PCR), metabolite production (1H NMR analysis), and bacterial transcriptional response (RNA-Seq) of R. bromii cultured with RS or soluble starch (SS) in the presence or absence of R. gnavus. In co-culture fermentations on starch, 1H NMR analysis showed that R. gnavus benefits from transient glucose and malto-oligosaccharides released by R. bromii upon starch degradation, producing acetate, formate, and lactate as main fermentation end-products. Differential expression analysis (DESeq 2) on starch (SS and RS) showed that the presence of R. bromii induced changes in R. gnavus transcriptional response of genes encoding several maltose transporters and enzymes involved in its metabolism such as maltose phosphorylase, in line with the ability of R. gnavus to utilize R. bromii starch degradation products. In the RS co-culture, R. bromii showed a significant increase in the induction of tryptophan (Trp) biosynthesis genes and a decrease of vitamin B12 (VitB12)-dependent methionine biosynthesis as compared to the mono-culture, suggesting that Trp and VitB12 availability become limited in the presence of R. gnavus. Together this study showed a direct competition between R. bromii and R. gnavus on RS, suggesting that in vivo, the R. gnavus population inhabiting the mucus niche may be modulated by the supply of non-digestible carbohydrates reaching the colon such as R

Islands Containing Slowly Hydrolyzable GTP Analogs Promote Microtubule Rescues

Microtubules are dynamic polymers of GTP- and GDP-tubulin that undergo stochastic transitions between growing and shrinking phases. Rescues, the conversion from shrinking to growing, have recently been proposed to be to the result of regrowth at GTP-tubulin islands within the lattice of growing microtubules. By introducing mixed GTP/GDP/GMPCPP (GXP) regions within the lattice of dynamic microtubules, we reconstituted GXP islands in vitro (GMPCPP is the slowly hydrolyzable GTP analog guanosine-5′-[(α,β)-methyleno]triphosphate). We found that such islands could reproducibly induce rescues and that the probability of rescue correlated with both the size of the island and the percentage of GMPCPP-tubulin within the island. The islands slowed the depolymerization rate of shortening microtubules and promoted regrowth more readily than GMPCPP seeds. Together, these findings provide new mechanistic insights supporting the possibility that rescues could be triggered by enriched GTP-tubulin regions and present a new tool for studying such rescue events in vitro

Upregulation of cortico-cerebellar functional connectivity after motor learning

Interactions between the cerebellum and primary motor cortex are crucial for the acquisition of new motor skills. Recent neuroimaging studies indicate that learning motor skills is associated with subsequent modulation of resting-state functional connectivity in the cerebellar and cerebral cortices. The neuronal processes underlying the motor-learning-induced plasticity are not well understood. Here, we investigate changes in functional connectivity in source-reconstructed electroencephalography (EEG) following the performance of a single session of a dynamic force task in twenty young adults. Source activity was reconstructed in 112 regions of interest (ROIs) and the functional connectivity between all ROIs was estimated using the imaginary part of coherence. Significant changes in resting-state connectivity were assessed using partial least squares (PLS). We found that subjects adapted their motor performance during the training session and showed improved accuracy but with slower movement times. A number of connections were significantly upregulated after motor training, principally involving connections within the cerebellum and between the cerebellum and motor cortex. Increased connectivity was confined to specific frequency ranges in the mu- and beta-bands. Post hoc analysis of the phase spectra of these cerebellar and cortico-cerebellar connections revealed an increased phase lag between motor cortical and cerebellar activity following motor practice. These findings show a reorganization of intrinsic cortico-cerebellar connectivity related to motor adaptation and demonstrate the potential of EEG connectivity analysis in source space to reveal the neuronal processes that underpin neural plasticity

The Potential and Challenges of Nanopore Sequencing

A nanopore-based device provides single-molecule detection and analytical capabilities that are achieved by electrophoretically driving molecules in solution through a nano-scale pore. The nanopore provides a highly confined space within which single nucleic acid polymers can be analyzed at high throughput by one of a variety of means, and the perfect processivity that can be enforced in a narrow pore ensures that the native order of the nucleobases in a polynucleotide is reflected in the sequence of signals that is detected. Kilobase length polymers (single-stranded genomic DNA or RNA) or small molecules (e.g., nucleosides) can be identified and characterized without amplification or labeling, a unique analytical capability that makes inexpensive, rapid DNA sequencing a possibility. Further research and development to overcome current challenges to nanopore identification of each successive nucleotide in a DNA strand offers the prospect of ‘third generation’ instruments that will sequence a diploid mammalian genome for ~$1,000 in ~24 h.Molecular and Cellular BiologyPhysic

Resting-state cortical connectivity predicts motor skill acquisition

Many studies have examined brain states in an effort to predict individual differences in capacity for learning, with overall moderate results. The present study investigated how measures of cortical network function acquired at rest using dense-array EEG (256 leads) predict subsequent acquisition of a new motor skill. Brain activity was recorded in 17 healthy young subjects during three minutes of wakeful rest prior to a single motor skill training session on a digital version of the pursuit rotor task. Practice was associated with significant gains in task performance (% time on target increased from 24% to 41%, p < 0.0001). Using a partial least squares regression (PLS) model, coherence with the region of the left primary motor area (M1) in resting EEG data was a strong predictor of motor skill acquisition (R(2) = 0.81 in a leave-one-out cross-validation analysis), exceeding the information provided by baseline behavior and demographics. Within this PLS model, greater skill acquisition was predicted by higher connectivity between M1 and left parietal cortex, possibly reflecting greater capacity for visuomotor integration, and by lower connectivity between M1 and left frontal-premotor areas, possibly reflecting differences in motor planning strategies. EEG coherence, which reflects functional connectivity, predicts individual motor skill acquisition with a level of accuracy that is remarkably high compared to prior reports using EEG or fMRI measures

Gut microbiota, NLR proteins, and intestinal homeostasis

The gastrointestinal tract harbors a highly complex microbial community, which is referred to as gut microbiota. With increasing evidence suggesting that the imbalance of gut microbiota plays a significant role in the pathogenesis of multiple diseases, interactions between the host immune system and the gut microbiota are now attracting emerging interest. Nucleotide-binding and leucine-rich repeat-containing receptors (NLRs) encompass a large number of innate immune sensors and receptors, which mediate the activation of Caspase-1 and the subsequent release of mature interleukin-1β and interleukin-18. Several family members have been found to restrain rather than activate inflammatory cytokines and immune signaling. NLR family members are central regulators of pathogen recognition, host immunity, and inflammation with utmost importance in human diseases. In this review, we focus on the potential roles played by NLRs in controlling and shaping the microbiota community and discuss how the functional axes interconnecting gut microbiota with NLRs impact the modulation of colitis, inflammatory bowel diseases, and colorectal cancer.The authors acknowledge many investigators in the field whose primary data could not be cited in this review because of space limitations. This work was supported by grants from the National Institute of Allergy and Infectious Diseases (grant R01-AI029564), National Institutes of Health (grant R35CA232109), National Institute of Diabetes and Digestive and Kidney Diseases (grant P01-DK094779), and RadCCORE (grant AI067798 to J.P.Y. Ting) and ITCMS T32 (grant 5T32CA009156 to S.A. Gibson). Author contributions: H. Guo wrote the initial draft, prepared and created the figures and tables, and revised the paper. S.A. Gibson wrote the initial draft and prepared and created the figures and Table 2. J.P.Y. Ting provided oversight and leadership responsibility for this paper and edited the manuscript. Disclosures: J.P.Y. Ting reported a patent to University of North Carolina, currently pending, and is the cofounder of GoldCrest Bio, a company that is looking at the role of the microbiota in radiation sickness. H. Guo holds equity shares in GoldCrest Bio. No other disclosures were reported

Nanotechnology intervention of the microbiome for cancer therapy

The microbiome is emerging as a key player and driver of cancer. Traditional modalities to manipulate the microbiome (for example, antibiotics, probiotics and microbiota transplants) have been shown to improve efficacy of cancer therapies in some cases, but issues such as collateral damage to the commensal microbiota and consistency of these approaches motivates efforts towards developing new technologies specifically designed for the microbiome–cancer interface. Considering the success of nanotechnology in transforming cancer diagnostics and treatment, nanotechnologies capable of manipulating interactions that occur across microscopic and molecular length scales in the microbiome and the tumour microenvironment have the potential to provide innovative strategies for cancer treatment. As such, opportunities at the intersection of nanotechnology, the microbiome and cancer are massive. In this Review, we highlight key opportunistic areas for applying nanotechnologies towards manipulating the microbiome for the treatment of cancer, give an overview of seminal work and discuss future challenges and our perspective on this emerging area