Supramolecular Complexation of \u3cem\u3eN\u3c/em\u3e-Alkyl- and \u3cem\u3eN\u3c/em\u3e,\u3cem\u3eN\u3c/em\u3e′-Dialkylpiperazines with Cucurbit[6]uril in Aqueous Solution and in the Solid State

Water seeds: Complex stoichiometry/composition and degree of oligomerization (oligomeric supramolecular complex formation) of cucurbit[6]uril (CB[6]) with N-alkyl- and N,N′-dialkylpiperazine were investigated in aqueous solutions by means of isothermal titration calorimetry (ITC), ESI-MS, NMR and light scattering measurements. Complex stoichiometry/composition and degree of oligomerization (oligomeric supramolecular complex formation) of cucurbit[6]uril (CB[6]) with N-alkyl- and N,N′-dialkylpiperazine were investigated in aqueous solutions by means of isothermal titration calorimetry (ITC), ESI-MS, NMR and light scattering measurements. It was found that the complex stability and the degree of oligomerization increase with elongating the alkyl chain attached to the piperazine core. X-ray crystallographic studies revealed a clear correlation between the structure of CB[6]–alkylpiperazine crystals obtained from aqueous solutions and the molecular weight/properties of host–guest oligomers existed in the solution as supramolecular “seeds” of crystal formation

Micellization of Sliding Polymer Surfactants

Following up a recent paper on grafted sliding polymer layers (Macromolecules 2005, 38, 1434-1441), we investigated the influence of the sliding degree of freedom on the self-assembly of sliding polymeric surfactants that can be obtained by complexation of polymers with cyclodextrins. In contrast to the micelles of quenched block copolymer surfactants, the free energy of micelles of sliding surfactants can have two minima: the first corresponding to small micelles with symmetric arm lengths, and the second corresponding to large micelles with asymmetric arm lengths. The relative sizes and concentrations of small and large micelles in the solution depend on the molecular parameters of the system. The appearance of small micelles drastically reduces the kinetic barrier signifying the fast formation of equilibrium micelles.Comment: Submitted to Macromolecule

Cucurbiturils as supramolecular inhibitors of DNA restriction by type II endonucleases

Cucurbiturils (CB6 and CB7) were shown to inhibit the enzymatically catalyzed restriction of plasmids and linear DNA. This effect can be inverted by supramolecular masking of the macrocycles through competitive complexation with polyamines. These experiments provide supramolecular control of biocatalytic processes.Spanish MINECO [CTQ2011-28390]; FEDER; COST [CM1005]; DFG [NA-686/5]; Portuguese FCT [SFRH/BD/81628/2011, PEst-OE/EQB/LA0023/2013

Five-Component Self-Assembly of Cucurbituril-Based Hetero-pseudorotaxanes

[5]Pseudorotaxanes can be obtained by self-sorting using heteroditopic guests and various cucurbituril homologues as hosts. The assembly and chemically induced disassembly of the pseudorotaxanes can be monitored by measuring the fluorescence of the anthracene guest in solution. Mass spectral evidence for the supramolecular assemblies is obtained in the gas phase. The disassembly in the gas phase can be achieved by collision-induced dissociation leading to the corresponding [2]- and [3]pseudorotaxanes.Ministerio de Economia y Competitividad, Madrid, Spain [CTQ2011-28390, CTQ2014-54729-C2-1-P, BES2015-074458]; Junta de Andalucia [P12-FQM2140]; Fundacao para a Ciencia e a Tecnologia, Lisbon, Portugal [SFRH/BD/81628/2011]; Egyptian Ministry of Higher Education, Cairoinfo:eu-repo/semantics/publishedVersio

Molecular Recognition of Amino Acids, Peptides, and Proteins by Cucurbit[n]uril Receptors

At the forefront of the endeavor to understand and manipulate living systems is the design and study of receptors that bind with high affinity and selectivity to specific amino acids, peptides, and proteins. Cucurbit[n]urils are among the most promising class of synthetic receptors for these targets due to their high affinities and selectivities in aqueous media and to the unique combination of electrostatic and hydrophobic interactions that govern binding. The fundamental supramolecular chemistry in this area has been explored in depth, and novel, useful applications are beginning to emerge

A Versatile Multicomponent Assembly via β‐cyclodextrin Host–Guest Chemistry on Graphene for Biomedical Applications

A multi‐component nanosystem based on graphene and comprising individual cyclodextrins at its surface is assembled, creating hybrid structures enabling new and important functionalities: optical imaging, drug storage, and cell targeting for medical diagnosis and treatment. These nanohybrids are part of a universal system of interchangeable units, capable of mutilple functionalities. The surface components, made of individual β‐cyclodextrin molecules, are the “hosts” for functional units, which may be used as imaging agents, for anti‐cancer drug delivery, and as tumor‐specific ligands. Specifically, individual β‐cyclodextrin (β‐CD), with a known capability to host various molecules, is considered a module unit that is assembled onto graphene nanosheet (GNS). The cyclodextrin‐functionalized graphene nanosheet (GNS/β‐CD) enables “host–guest” chemistry between the nanohybrid and functional “payloads”. The structure, composition, and morphology of the graphene nanosheet hybrid have been investigated. The nanohybrid, GNS/β‐CD, is highly dispersive in various physiological solutions, reflecting the high biostability of cyclodextrin. Regarding the host capability, the nanohybrid is fully capable of selectively accommodating various biological and functional agents in a controlled fashion, including the antivirus drug amantadine, fluorescent dye [5(6)‐carboxyfluorescein], and Arg‐Gly‐Asp (RGD) peptide‐targeting ligands assisted by an adamantine linker. The loading ratio of 5(6)‐carboxyfluorescein is as high as 110% with a drug concentration of 0.45 mg mL −1 . The cyclic RGD‐functionalized nanohybrid exhibits remarkable targeting for HeLa cells. A unique carrier system is engineered from β‐cyclodextrin (β‐CD) as a unit module assembled in a multiple fashion onto graphene nanosheets (GNS). Such carrier is capable of accommodating a variety of functional or biological “guest” molecules, providing needed functionalities such as fluorescence for in vivo imaging, anticancer drug for therapy, or target moieties for cell targeting.Peer Reviewedhttp://deepblue.lib.umich.edu/bitstream/2027.42/96367/1/446_ftp.pdfhttp://deepblue.lib.umich.edu/bitstream/2027.42/96367/2/smll_201201003_sm_suppl.pd

Anchoring of Histidine-Tagged Proteins to Molecular Printboards: Self-assembly, Thermodynamic Modeling, and Patterning

In this paper the multivalent binding of hexahistidine (His6)-tagged proteins to β-cyclodextrin (β-CD) self-assembled monolayers (SAMs) by using the nickel(II) complex of a hetero-divalent orthogonal adamantyl nitrilotriacetate linker (4) is described. Nonspecific interactions were suppressed by using monovalent adamantyl-hexa(ethylene glycol) derivative 3. With the mono-His6-tagged maltose binding protein (His6-MBP), thermodynamic modeling based on surface plasmon resonance (SPR) titration data showed that the MBP molecules in solution were linked, on average, to Ni4 in 1:1 stoichiometry. On the surface, however, the majority of His6-MBP was complexed to surface-immobilized β-CDs through three Ni4 complexes. This difference is explained by the high effective β-CD concentration at the surface and is a new example of supramolecular interfacial expression. In a similar adsorption scheme, SPR proved that the α-proteasome could be attached to β-CD SAMs in a specific manner. Patterning through microcontact printing of (His6)4-DsRed-fluorescent timer (DsRed-FT), which is a tetrameric, visible autofluorescent protein, was carried out in the presence of Ni4. Fluorescence measurements showed that the (His6)4-DsRed-FT is bound strongly through Ni4 to the molecular printboard

Supramolecular Assemblies Constructed by Cucurbituril-Catalyzed Click Reaction

Cataloged from PDF version of article.Cucurbituril homologues are multi-functional macrocycles that can find applications in many areas and have numerous interesting features setting them apart from the other macrocycles. Among them, the ability of one of the cucurbituril homologues, cucurbit[6]uril (CB6), to catalyze 1,3-dipolar cycloaddition in a regiospecific fashion is truly exceptional. Using this feature, small molecules can be clicked together to form complex structures in a very efficient way. Accordingly, in this article we review recent research involving the use of CB6-catalyzed 1,3-dipolar cycloaddition or the click reaction of CB6 in the construction of supramolecular assemblies including rotaxanes, pseudorotaxanes, polyrotaxanes, polypseudorotaxanes, molecular switches, machines, and nanovalves