Maximally Informative k-Itemset Mining from Massively Distributed Data Streams

International audienceWe address the problem of mining maximally informative k-itemsets (miki) in data streams based on joint entropy. We propose PentroS, a highly scalable parallel miki mining algorithm. PentroS renders the mining process of large volumes of incoming data very efficient. It is designed to take into account the continuous aspect of data streams, particularly by reducing the computations of need for updating the miki results after arrival/departure of transactions to/from the sliding window. PentroS has been extensively evaluated using massive real-world data streams. Our experimental results confirm the effectiveness of our proposal which allows excellent throughput with high itemset length

The invasive tropical scyphozoan Rhopilema nomadica Galil, 1990 reaches the Tunisian coast of the Mediterranean Sea

The alien Erythraean jellyfish Rhopilema nomadica was first recorded in Tunisia waters (Gulf of Gabes) in 2008. Subsequently it was sighted in the Bizerte Channel and Gulf of Tunis where it has been regularly observed since 2010 during summer and autumn months.peer-reviewe

Closed-Pattern : Une contrainte globale pour l’extraction de motifs fréquents fermés

National audienceL’extraction de motifs fréquents fermés est un des défis majeurs en fouille de données. Les travaux entrepris récemment en extraction de motifs ont mis en avant l’intérêt d’utiliser les contraintes pour une fouille déclarative. Ces approches se sont montrées très attractives par leurs flexibilité, mais l’utilisation d’un nombre important de contraintes réifiées et de variables auxiliaires posent un sérieux problème quant au traitement des bases de grandes tailles. Dans ce papier, nous présentons une contrainte globale nommée ClosedPattern, qui capture la sémantique particulière des motifs fermés pour résoudre efficacement ce problème, sans faire appel aux contraintes réifiées. Nous proposons un algorithme de filtrage pour la contrainte ClosedPattern, qui maintient la consistance de domaine DC en un temps et espace polynomial

Are anti-jellyfish nets a useful mitigation tool for coastal tourism? Hindsight from the MED-JELLYRISK experience

The mitigation of coastal hazards, notably jellyfish blooms, has assumed great significance in recent years in view of the potential detrimental impact of such hazards on the welfare of coastal communities. This is especially true in a basin such as the Mediterranean with a very high degree of coastal settlement and dependence on coastal economic activities. Within the MED-JELLYRISK project and over the course of two summers (2014 and 2015), a total of 15 anti-jellyfish nets within several Mediterranean tourist hotposts were installed in Italy (islands of Lipari, Salina, Ustica, Lampedusa and Favignana), Spain (two beaches on the island of Ibiza), Tunisia (beaches at Monastir and Hammamet) and Malta. Manufactured in 25m-long modules, the nets were specifically designed to exclude individuals of jellyfish species from the enclosed bathing areas, and were installed on shallow sandy and rocky bottoms from the coastal fringe down to a water depth of 2.5m. The performance of the same nets was monitored through scientific surveys inside and outside the net-enclosed areas. In parallel, the colonization of fouling organisms on the submerged sections of the nets was investigated, and the public perception of the installed nets was assessed through ad hoc questionnaires deployed on the beaches. Useful hindsight for coastal managers, concerning best sites and conditions for deployment, net design and materials, has been gained from this experimental anti-jellyfish net deployment effort within the MED-JELLYRISK project.peer-reviewe

Antimicrobial resistance among migrants in Europe: a systematic review and meta-analysis

BACKGROUND: Rates of antimicrobial resistance (AMR) are rising globally and there is concern that increased migration is contributing to the burden of antibiotic resistance in Europe. However, the effect of migration on the burden of AMR in Europe has not yet been comprehensively examined. Therefore, we did a systematic review and meta-analysis to identify and synthesise data for AMR carriage or infection in migrants to Europe to examine differences in patterns of AMR across migrant groups and in different settings. METHODS: For this systematic review and meta-analysis, we searched MEDLINE, Embase, PubMed, and Scopus with no language restrictions from Jan 1, 2000, to Jan 18, 2017, for primary data from observational studies reporting antibacterial resistance in common bacterial pathogens among migrants to 21 European Union-15 and European Economic Area countries. To be eligible for inclusion, studies had to report data on carriage or infection with laboratory-confirmed antibiotic-resistant organisms in migrant populations. We extracted data from eligible studies and assessed quality using piloted, standardised forms. We did not examine drug resistance in tuberculosis and excluded articles solely reporting on this parameter. We also excluded articles in which migrant status was determined by ethnicity, country of birth of participants' parents, or was not defined, and articles in which data were not disaggregated by migrant status. Outcomes were carriage of or infection with antibiotic-resistant organisms. We used random-effects models to calculate the pooled prevalence of each outcome. The study protocol is registered with PROSPERO, number CRD42016043681. FINDINGS: We identified 2274 articles, of which 23 observational studies reporting on antibiotic resistance in 2319 migrants were included. The pooled prevalence of any AMR carriage or AMR infection in migrants was 25·4% (95% CI 19·1-31·8; I2 =98%), including meticillin-resistant Staphylococcus aureus (7·8%, 4·8-10·7; I2 =92%) and antibiotic-resistant Gram-negative bacteria (27·2%, 17·6-36·8; I2 =94%). The pooled prevalence of any AMR carriage or infection was higher in refugees and asylum seekers (33·0%, 18·3-47·6; I2 =98%) than in other migrant groups (6·6%, 1·8-11·3; I2 =92%). The pooled prevalence of antibiotic-resistant organisms was slightly higher in high-migrant community settings (33·1%, 11·1-55·1; I2 =96%) than in migrants in hospitals (24·3%, 16·1-32·6; I2 =98%). We did not find evidence of high rates of transmission of AMR from migrant to host populations. INTERPRETATION: Migrants are exposed to conditions favouring the emergence of drug resistance during transit and in host countries in Europe. Increased antibiotic resistance among refugees and asylum seekers and in high-migrant community settings (such as refugee camps and detention facilities) highlights the need for improved living conditions, access to health care, and initiatives to facilitate detection of and appropriate high-quality treatment for antibiotic-resistant infections during transit and in host countries. Protocols for the prevention and control of infection and for antibiotic surveillance need to be integrated in all aspects of health care, which should be accessible for all migrant groups, and should target determinants of AMR before, during, and after migration. FUNDING: UK National Institute for Health Research Imperial Biomedical Research Centre, Imperial College Healthcare Charity, the Wellcome Trust, and UK National Institute for Health Research Health Protection Research Unit in Healthcare-associated Infections and Antimictobial Resistance at Imperial College London

Terrestrial Very-Long-Baseline Atom Interferometry:Workshop Summary

This document presents a summary of the 2023 Terrestrial Very-Long-Baseline Atom Interferometry Workshop hosted by CERN. The workshop brought together experts from around the world to discuss the exciting developments in large-scale atom interferometer (AI) prototypes and their potential for detecting ultralight dark matter and gravitational waves. The primary objective of the workshop was to lay the groundwork for an international TVLBAI proto-collaboration. This collaboration aims to unite researchers from different institutions to strategize and secure funding for terrestrial large-scale AI projects. The ultimate goal is to create a roadmap detailing the design and technology choices for one or more km-scale detectors, which will be operational in the mid-2030s. The key sections of this report present the physics case and technical challenges, together with a comprehensive overview of the discussions at the workshop together with the main conclusions

Surgical site infection after gastrointestinal surgery in high-income, middle-income, and low-income countries: a prospective, international, multicentre cohort study

Background: Surgical site infection (SSI) is one of the most common infections associated with health care, but its importance as a global health priority is not fully understood. We quantified the burden of SSI after gastrointestinal surgery in countries in all parts of the world. Methods: This international, prospective, multicentre cohort study included consecutive patients undergoing elective or emergency gastrointestinal resection within 2-week time periods at any health-care facility in any country. Countries with participating centres were stratified into high-income, middle-income, and low-income groups according to the UN's Human Development Index (HDI). Data variables from the GlobalSurg 1 study and other studies that have been found to affect the likelihood of SSI were entered into risk adjustment models. The primary outcome measure was the 30-day SSI incidence (defined by US Centers for Disease Control and Prevention criteria for superficial and deep incisional SSI). Relationships with explanatory variables were examined using Bayesian multilevel logistic regression models. This trial is registered with ClinicalTrials.gov, number NCT02662231. Findings: Between Jan 4, 2016, and July 31, 2016, 13 265 records were submitted for analysis. 12 539 patients from 343 hospitals in 66 countries were included. 7339 (58·5%) patient were from high-HDI countries (193 hospitals in 30 countries), 3918 (31·2%) patients were from middle-HDI countries (82 hospitals in 18 countries), and 1282 (10·2%) patients were from low-HDI countries (68 hospitals in 18 countries). In total, 1538 (12·3%) patients had SSI within 30 days of surgery. The incidence of SSI varied between countries with high (691 [9·4%] of 7339 patients), middle (549 [14·0%] of 3918 patients), and low (298 [23·2%] of 1282) HDI (p < 0·001). The highest SSI incidence in each HDI group was after dirty surgery (102 [17·8%] of 574 patients in high-HDI countries; 74 [31·4%] of 236 patients in middle-HDI countries; 72 [39·8%] of 181 patients in low-HDI countries). Following risk factor adjustment, patients in low-HDI countries were at greatest risk of SSI (adjusted odds ratio 1·60, 95% credible interval 1·05–2·37; p=0·030). 132 (21·6%) of 610 patients with an SSI and a microbiology culture result had an infection that was resistant to the prophylactic antibiotic used. Resistant infections were detected in 49 (16·6%) of 295 patients in high-HDI countries, in 37 (19·8%) of 187 patients in middle-HDI countries, and in 46 (35·9%) of 128 patients in low-HDI countries (p < 0·001). Interpretation: Countries with a low HDI carry a disproportionately greater burden of SSI than countries with a middle or high HDI and might have higher rates of antibiotic resistance. In view of WHO recommendations on SSI prevention that highlight the absence of high-quality interventional research, urgent, pragmatic, randomised trials based in LMICs are needed to assess measures aiming to reduce this preventable complication

Stable population structure in Europe since the Iron Age, despite high mobility

Ancient DNA research in the past decade has revealed that European population structure changed dramatically in the prehistoric period (14,000–3000 years before present, YBP), reflecting the widespread introduction of Neolithic farmer and Bronze Age Steppe ancestries. However, little is known about how population structure changed from the historical period onward (3000 YBP - present). To address this, we collected whole genomes from 204 individuals from Europe and the Mediterranean, many of which are the first historical period genomes from their region (e.g. Armenia and France). We found that most regions show remarkable inter-individual heterogeneity. At least 7% of historical individuals carry ancestry uncommon in the region where they were sampled, some indicating cross-Mediterranean contacts. Despite this high level of mobility, overall population structure across western Eurasia is relatively stable through the historical period up to the present, mirroring geography. We show that, under standard population genetics models with local panmixia, the observed level of dispersal would lead to a collapse of population structure. Persistent population structure thus suggests a lower effective migration rate than indicated by the observed dispersal. We hypothesize that this phenomenon can be explained by extensive transient dispersal arising from drastically improved transportation networks and the Roman Empire’s mobilization of people for trade, labor, and military. This work highlights the utility of ancient DNA in elucidating finer scale human population dynamics in recent history

Localisation de fautes à l’aide de la fouille de données sous contraintes

International audienceNous proposons dans cet article une approche basée sur la fouille de motifs ensemblistes sous contraintes pour la localisation des fautes dans les programmes. Nous formalisons le problème de localisation des fautes comme un problème d’extraction des k meilleurs motifs satisfaisant un ensemble de contraintes modélisant les instructions les plus suspectes. Nous faisons appel à la programmation par contraintes pour modéliser et résoudre le problème de localisation. Les expérimentations menées sur une série de programmes montrent que notre approche offre une localisation plus précise comparée à Tarantula