Development of a semi-parametric PAR (Photosynthetically Active Radiation) partitioning model for the United States, version 1.0

A semi-parametric PAR diffuse radiation model was developed using commonly measured climatic variables from 108 site-years of data from 17 AmeriFlux sites. The model has a logistic form and improves upon previous efforts using a larger data set and physically viable climate variables as predictors, including relative humidity, clearness index, surface albedo and solar elevation angle. Model performance was evaluated by comparison with a simple cubic polynomial model developed for the PAR spectral range. The logistic model outperformed the polynomial model with an improved coefficient of determination and slope relative to measured data (logistic: R² = 0.76; slope = 0.76; cubic: R² = 0.73; slope = 0.72), making this the most robust PAR-partitioning model for the United States currently available.This is the publisher’s final pdf. The published article is copyrighted by the author(s) and published by Copernicus Publications on behalf of the European Geosciences Union. The published article can be found at: http://www.geoscientific-model-development.net/home.html

Calculating CO2 and H2O eddy covariance fluxes from an enclosed gas analyzer using an instantaneous mixing ratio

Eddy covariance flux research has relied on open- or closed-path gas analyzers for producing estimates of net ecosystem exchange of carbon dioxide (CO₂) and water vapor (H₂O). The two instruments have had different challenges that have led to development of an enclosed design that is intended to maximize strengths and minimize weaknesses of both traditional designs. Similar to the closed-path analyzer, the enclosed design leads to minimal data loss during precipitation events and icing, and it does not have surface heating issues. Similar to the open-path design, the enclosed design has good frequency response due to small flux attenuation loss in the short intake tube, does not need frequent calibration, has minimal maintenance requirements, and can be used in a very low power configuration. Another important feature of such a design is the ability to output instantaneous mixing ratio, or dry mole fraction, so that instantaneous thermal and pressure-related expansion and contraction, and water dilution of the sampled air have been accounted for. Thus, no density corrections should be required to compute fluxes during post-processing. Calculations of CO₂ and H₂O fluxes via instantaneous mixing ratio from the new enclosed CO₂/H₂O gas analyzer were tested in nine field experiments during 20092010 in a wide range of ecosystems and setups. Fluxes computed via a mixing ratio output from the instrument without applying density corrections were compared to those computed the traditional way using density corrections. The results suggest that with proper temperature, water vapor, and pressure measurements in the cell, gas fluxes can be computed confidently from raw covariance of mixing ratio and vertical wind speed, multiplied by a frequency response correction. This has important implications for future flux measurements, because avoiding hourly density corrections could have the advantages of increasing flux measurement quality and temporal resolution, reducing the magnitude of minimum detectable flux, unifying data processing steps, and assuring better intercomparison between different sites and networks.Keywords: H[subscript 2]O flux, Mixing ratio, Carbon dioxide exchange, Open path, WPL, CO[subscript 2] flux, Density correction, Flux, Closed path, Eddy covariance, Gas analyzer, Enclosed analyze

Fluxes of water, sediments, and biogeochemical compounds in salt marshes

Tidal oscillations systematically flood salt marshes, transporting water, sediments, organic matter, and biogeochemical elements such as silica. Here we present a review of recent studies on these fluxes and their effects on both ecosystem functioning and morphological evolution of salt marshes. We reexamine a simplified model for the computation of water fluxes in salt marshes that captures the asymmetry in discharge between flood and ebb. We discuss the role of storm conditions on sediment fluxes both in tidal channels and on the marsh platform. We present recent methods and field instruments for the measurement of fluxes of organic matter. These methods will provide long-term data sets with fine temporal resolution that will help scientists to close the carbon budget in salt marshes. Finally, the main processes controlling fluxes of biogenic and dissolved silica in salt marshes are explained, with particular emphasis on the uptake by marsh macrophytes and diatoms

SchmidtAndresForestryDevelopmentSemi-Parametric.pdf

A semi-parametric PAR diffuse radiation model was developed using commonly measured climatic variables from 108 site-years of data from 17 AmeriFlux sites. The model has a logistic form and improves upon previous efforts using a larger data set and physically viable climate variables as predictors, including relative humidity, clearness index, surface albedo and solar elevation angle. Model performance was evaluated by comparison with a simple cubic polynomial model developed for the PAR spectral range. The logistic model outperformed the polynomial model with an improved coefficient of determination and slope relative to measured data (logistic: R² = 0.76; slope = 0.76; cubic: R² = 0.73; slope = 0.72), making this the most robust PAR-partitioning model for the United States currently available

SchmidtAndresForestryDevelopmentSemi-Parametric_Supplement.zip

A semi-parametric PAR diffuse radiation model was developed using commonly measured climatic variables from 108 site-years of data from 17 AmeriFlux sites. The model has a logistic form and improves upon previous efforts using a larger data set and physically viable climate variables as predictors, including relative humidity, clearness index, surface albedo and solar elevation angle. Model performance was evaluated by comparison with a simple cubic polynomial model developed for the PAR spectral range. The logistic model outperformed the polynomial model with an improved coefficient of determination and slope relative to measured data (logistic: R² = 0.76; slope = 0.76; cubic: R² = 0.73; slope = 0.72), making this the most robust PAR-partitioning model for the United States currently available

Carbon dioxide and methane dynamics in estuaries

We carried out a literature overview to synthesize current knowledge on CO2 and CH4 dynamics and fluxes with the atmosphere in estuarine environments. Estuarine systems are highly dynamic in terms of carbon cycling and emit CO2 to the atmosphere at rates that are quantitatively significant for the global C cycle. This emission of CO2 to the atmosphere is strongly supported by the net heterotrophic nature of these ecosystems. The robustness of the evaluation of the emission of CO2 from estuarine ecosystems has increased in last years due to increasing data availability and improvements in the surface area estimates by types. At present, the lack of sufficient data is the major limitation in the quantification of the spatial and temporal variability of CO2 fluxes in estuarine environments. Regarding future observations, there is also a need for sustained measurements to unravel inter-annual variability and long-term trends of CO2 and CH4 in estuarine environments. Indeed, due to the strong linkage with river catchements, inter-annual variability of CO2 and CH4 in estuarine environments is expected to be strong. Data used in the present synthesis were either obtained by the authors, data mined from publications or communicated by colleagues. There is a need for publicly available and quality checked data-bases for CO2 and CH4 in estuarine environments. Not only cross-system meta-analysis of data (CO2, CH4, O2, …) can be enlightening as explored in the present work, but also considering the uncertainties in the evaluation of the gas transfer velocity, there could be a need for future re-evaluations of air-water CO2 and CH4 fluxes, requiring access to the raw pCO2 and [CH4] data