41 research outputs found

    A GWAS in Latin Americans highlights the convergent evolution of lighter skin pigmentation in Eurasia

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    We report a genome-wide association scan in >6,000 Latin Americans for pigmentation of skin and eyes. We found eighteen signals of association at twelve genomic regions. These include one novel locus for skin pigmentation (in 10q26) and three novel loci for eye pigmentation (in 1q32, 20q13 and 22q12). We demonstrate the presence of multiple independent signals of association in the 11q14 and 15q13 regions (comprising the GRM5/TYR and HERC2/OCA2 genes, respectively) and several epistatic interactions among independently associated alleles. Strongest association with skin pigmentation at 19p13 was observed for an Y182H missense variant (common only in East Asians and Native Americans) in MFSD12, a gene recently associated with skin pigmentation in Africans. We show that the frequency of the derived allele at Y182H is significantly correlated with lower solar radiation intensity in East Asia and infer that MFSD12 was under selection in East Asians, probably after their split from Europeans

    Biased-corrected richness estimates for the Amazonian tree flora

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    Amazonian forests are extraordinarily diverse, but the estimated species richness is very much debated. Here, we apply an ensemble of parametric estimators and a novel technique that includes conspecific spatial aggregation to an extended database of forest plots with up-to-date taxonomy. We show that the species abundance distribution of Amazonia is best approximated by a logseries with aggregated individuals, where aggregation increases with rarity. By averaging several methods to estimate total richness, we confirm that over 15,000 tree species are expected to occur in Amazonia. We also show that using ten times the number of plots would result in an increase to just ~50% of those 15,000 estimated species. To get a more complete sample of all tree species, rigorous field campaigns may be needed but the number of trees in Amazonia will remain an estimate for years to come

    Geographic patterns of tree dispersal modes in Amazonia and their ecological correlates

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    This is the final version. Available on open access from Wiley via the DOI in this recordData availability statement: The percentages of dispersal modes per plot are included as Supporting Information (Table S7, based on 5433 species and morphospecies within 1877 tree-inventory plots across terra-firme, seasonally flooded, and permanently flooded forests in Amazonia). The dispersal modes assigned to these 5433 species and morphospecies are also included as Supporting Information (Table S8).Aim: To investigate the geographic patterns and ecological correlates in the geographic distribution of the most common tree dispersal modes in Amazonia (endozoochory, synzoochory, anemochory and hydrochory). We examined if the proportional abundance of these dispersal modes could be explained by the availability of dispersal agents (disperser-availability hypothesis) and/or the availability of resources for constructing zoochorous fruits (resource-availability hypothesis). Time period: Tree-inventory plots established between 1934 and 2019. Major taxa studied: Trees with a diameter at breast height (DBH) ≥ 9.55 cm. Location: Amazonia, here defined as the lowland rain forests of the Amazon River basin and the Guiana Shield. Methods: We assigned dispersal modes to a total of 5433 species and morphospecies within 1877 tree-inventory plots across terra-firme, seasonally flooded, and permanently flooded forests. We investigated geographic patterns in the proportional abundance of dispersal modes. We performed an abundance-weighted mean pairwise distance (MPD) test and fit generalized linear models (GLMs) to explain the geographic distribution of dispersal modes. Results: Anemochory was significantly, positively associated with mean annual wind speed, and hydrochory was significantly higher in flooded forests. Dispersal modes did not consistently show significant associations with the availability of resources for constructing zoochorous fruits. A lower dissimilarity in dispersal modes, resulting from a higher dominance of endozoochory, occurred in terra-firme forests (excluding podzols) compared to flooded forests. Main conclusions: The disperser-availability hypothesis was well supported for abiotic dispersal modes (anemochory and hydrochory). The availability of resources for constructing zoochorous fruits seems an unlikely explanation for the distribution of dispersal modes in Amazonia. The association between frugivores and the proportional abundance of zoochory requires further research, as tree recruitment not only depends on dispersal vectors but also on conditions that favour or limit seedling recruitment across forest types.Colombian institution Departamento Administrativo de Ciencia, Tecnología e Innovación COLCIENCIASFaculty of Sciences, Universidad de los Ande

    Distribución potencial de los abetos ibéricos en el pasado y el presente: una aproximación fitogeográfica desde el registro polínico y los modelos de distribución de especies

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    <p>Integrar información procedente de registros polínicos cuaternarios y modelos de distribución<br>de especies (SDM) con objeto de obtener un mejor conocimiento de la distribución potencial pasada y<br>presente de Abies pinsapo y A. alba en la Península Ibérica. Cuantificar cómo de diferentes son los<br>requerimientos ecológicos de ambas especies a partir de los resultados del modelo de distribución y<br>discutir, junto al registro fósil, posibles solapamientos en el área de distribución de ambas especies durante<br>el periodo Cuaternario. Localización/ecosistema: La península Ibérica. Métodos: Datos de ocurrencia<br>del área de distribución actual de A. pinsapo y A. alba. Registro polínico fósil durante el Cuaternario en la<br>Península Ibérica. Bases de datos climáticas y topográficas implementadas en GIS. Modelos de<br>distribución de especies (Algoritmo MaxEnt). Resultados: Los resultados del SDM mostraron una<br>notable diferenciación entre los nichos de A. pinsapo y A. alba. El pinsapo aparece restringido a localidades<br>del extremo Sur y Este de la Cordillera Prebética y Bética con un clima mediterráneo, húmedo pero con<br>marcada estacionalidad; el abeto blanco muestra idoneidad en zonas montañosas del norte peninsular<br>(Cordillera Cantábrica, Pirineos y Sistema Ibérico) de clima templado y reducido estrés hídrico estival. El<br>área de distribución actual de ambas especies es notablemente inferior al área potencial generada por el<br>modelo. Por otro lado, el registro fósil también indica numerosas localidades en las que los bosques de<br>abeto estuvieron presentes en el Cuaternario pero no en la actualidad, y que podrían ser adecuadas en el<br>marco de medidas pro-activas de conservación. Conclusiones: El patrón espacial de distribución de los<br>abetos ibéricos en el pasado reciente (Cuaternario) coincide con el generado de forma independiente por<br>el SDM, para el área de distribución actual. El uso de SDMs se mostró adecuado para definir los factores<br>ambientales determinantes del rango de distribución actual de ambas especies y para identificar posibles<br>áreas refugio, las cuales han sido además confirmadas por el registro paleopalinológico.</p> <p> </p
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