Development of a Molecular Genetic Method for Characterizing Amphibian Diets

DEVELOPMENT OF A MOLECULAR GENETIC METHOD FOR CHARACTERIZING AMPHIBIAN DIETS.Alexander Funk* and Todd W. Pierson, Department of Ecology and Evolutionary Biology, University of Tennessee Knoxville, [email protected] Dietary studies can provide key insights into the ecology and behavior of animals. Methods common in dietary studies of amphibians (e.g., gastric lavage, fecal analysis, dissection) often fail to identify prey beyond the level of Order, are time intensive, and can be biased against soft-bodied prey. Here, we are developing a DNA metabarcoding assay to characterize amphibian diets from non-invasive fecal samples. In DNA metabarcoding, barcoding loci from mixed community samples (e.g., feces) are sequenced on a next-generation sequencing platform, and resulting reads are used to identify members of that community (e.g., diet composition). To validate this method, we will prepare COI amplicon libraries from 27 fecal samples collected from wild Blue Ridge two-lined salamander (Eurycea wilderae) during the breeding season. We will sequence these reads on an Illumina MiSeq and compare resulting reads against a reference library of sequences of known identity to characterize invertebrate diet composition. Some of our samples are derived from male E. wilderae with two alternative reproductive tactics-“searching” and “guarding”. Because the latter is more likely to be found in aquatic habitats in the breeding season, we expect to find a great representation of aquatic invertebrates in its diet. We hope that this method will prove to be more accurate and efficient than previous methods, providing a new, versatile tool with which amphibian diets can be characterized and compared

Influence of Nutrient Availability, Stand Age, and Canopy Structure on Isoprene Flux in a Eucalyptus saligna Experimental Forest

Eucalyptus plantations occupy approximately 10 million ha of land in the tropics and, increasingly, afforestation and reforestation projects are relying on this genus to provide rapid occupation of degraded sites, large quantities of high-quality wood products, and high rates of carbon sequestration. Members of the genus Eucalyptus are also very high emitters of isoprene, the dominant volatile organic compound emitted by trees in tropical ecosystems, which significantly influences the oxidative capacity of the atmosphere. While fertilization growth response of these trees has been intensively studied, little is known about how fertilization and tree age alter isoprene production from plantations of these trees. Here we examined the effects of fertilization and tree age on leaf-level isoprene flux from 2- and 6-year-old trees in a Eucalyptus saligna experimental forest in Hawaii. Leaf-level emission at a given canopy height did not differ between fertilized and unfertilized 6-year-old trees likely because leaf nitrogen content did not vary with fertilization. Across treatments, however, the standardized emission rate of isoprene (emission at a standard light and temperature) followed patterns of leaf N content and declined with canopy depth. Although leaf nitrogen content was similar between 2-year and 6-year fertilized trees, leaf-level emission rates declined with stand age. Surprisingly, despite differences in stand leaf area and leaf area distribution, modeled canopy-level isoprene flux was similar across stands varying in fertilization and tree age. Model results suggest that leaf area index was high enough in all treatments to absorb most of the light penetrating the canopy, leading to similar canopy flux rates despite the very different sized canopies

Bose-Einstein correlations of same-sign charged pions in the forward region in pp collisions at √s=7 TeV

Bose-Einstein correlations of same-sign charged pions, produced in protonproton collisions at a 7 TeV centre-of-mass energy, are studied using a data sample collected by the LHCb experiment. The signature for Bose-Einstein correlations is observed in the form of an enhancement of pairs of like-sign charged pions with small four-momentum difference squared. The charged-particle multiplicity dependence of the Bose-Einstein correlation parameters describing the correlation strength and the size of the emitting source is investigated, determining both the correlation radius and the chaoticity parameter. The measured correlation radius is found to increase as a function of increasing charged-particle multiplicity, while the chaoticity parameter is seen to decreas

Study of charmonium production in b -hadron decays and first evidence for the decay Bs0

Using decays to φ-meson pairs, the inclusive production of charmonium states in b-hadron decays is studied with pp collision data corresponding to an integrated luminosity of 3.0 fb−1, collected by the LHCb experiment at centre-of-mass energies of 7 and 8 TeV. Denoting byBC ≡ B(b → C X) × B(C → φφ) the inclusive branching fraction of a b hadron to a charmonium state C that decays into a pair of φ mesons, ratios RC1C2 ≡ BC1 /BC2 are determined as Rχc0ηc(1S) = 0.147 ± 0.023 ± 0.011, Rχc1ηc(1S) =0.073 ± 0.016 ± 0.006, Rχc2ηc(1S) = 0.081 ± 0.013 ± 0.005,Rχc1 χc0 = 0.50 ± 0.11 ± 0.01, Rχc2 χc0 = 0.56 ± 0.10 ± 0.01and Rηc(2S)ηc(1S) = 0.040 ± 0.011 ± 0.004. Here and below the first uncertainties are statistical and the second systematic.Upper limits at 90% confidence level for the inclusive production of X(3872), X(3915) and χc2(2P) states are obtained as RX(3872)χc1 < 0.34, RX(3915)χc0 < 0.12 andRχc2(2P)χc2 < 0.16. Differential cross-sections as a function of transverse momentum are measured for the ηc(1S) andχc states. The branching fraction of the decay B0s → φφφ is measured for the first time, B(B0s → φφφ) = (2.15±0.54±0.28±0.21B)×10−6. Here the third uncertainty is due to the branching fraction of the decay B0s → φφ, which is used for normalization. No evidence for intermediate resonances is seen. A preferentially transverse φ polarization is observed.The measurements allow the determination of the ratio of the branching fractions for the ηc(1S) decays to φφ and p p asB(ηc(1S)→ φφ)/B(ηc(1S)→ p p) = 1.79 ± 0.14 ± 0.32

Study of J /ψ production in Jets

The production of J/ψ mesons in jets is studied in the forward region of proton-proton collisions using data collected with the LHCb detector at a center-of-mass energy of 13 TeV. The fraction of the jet transverse momentum carried by the J/ψ meson, z(J/ψ)≡pT(J/ψ)/pT(jet), is measured using jets with pT(jet)>20 GeV in the pseudorapidity range 2.5<η(jet)<4.0. The observed z(J/ψ)distribution for J/ψ mesons produced in b-hadron decays is consistent with expectations. However, the results for prompt J/ψ production do not agree with predictions based on fixed-order nonrelativistic QCD. This is the first measurement of the pT fraction carried by prompt J/ψ mesons in jets at any experiment

Observation of an Excited Bc+ State

Using pp collision data corresponding to an integrated luminosity of 8.5 fb-1 recorded by the LHCb experiment at center-of-mass energies of s=7, 8, and 13 TeV, the observation of an excited Bc+ state in the Bc+π+π- invariant-mass spectrum is reported. The observed peak has a mass of 6841.2±0.6(stat)±0.1(syst)±0.8(Bc+) MeV/c2, where the last uncertainty is due to the limited knowledge of the Bc+ mass. It is consistent with expectations of the Bc∗(2S31)+ state reconstructed without the low-energy photon from the Bc∗(1S31)+→Bc+γ decay following Bc∗(2S31)+→Bc∗(1S31)+π+π-. A second state is seen with a global (local) statistical significance of 2.2σ (3.2σ) and a mass of 6872.1±1.3(stat)±0.1(syst)±0.8(Bc+) MeV/c2, and is consistent with the Bc(2S10)+ state. These mass measurements are the most precise to date

Measurement of the inelastic pp cross-section at a centre-of-mass energy of 13TeV

The cross-section for inelastic proton-proton collisions at a centre-of-mass energy of 13TeV is measured with the LHCb detector. The fiducial cross-section for inelastic interactions producing at least one prompt long-lived charged particle with momentum p &gt; 2 GeV/c in the pseudorapidity range 2 &lt; η &lt; 5 is determined to be ϭ acc = 62:2 ± 0:2 ± 2:5mb. The first uncertainty is the intrinsic systematic uncertainty of the measurement, the second is due to the uncertainty on the integrated luminosity. The statistical uncertainty is negligible. Extrapolation to full phase space yields the total inelastic proton-proton cross-section ϭ inel = 75:4 ± 3:0 ± 4:5mb, where the first uncertainty is experimental and the second due to the extrapolation. An updated value of the inelastic cross-section at a centre-of-mass energy of 7TeV is also reported

Search for anomalous t t-bar production in the highly-boosted all-hadronic final state

A search is presented for a massive particle, generically referred to as a Z', decaying into a t t-bar pair. The search focuses on Z' resonances that are sufficiently massive to produce highly Lorentz-boosted top quarks, which yield collimated decay products that are partially or fully merged into single jets. The analysis uses new methods to analyze jet substructure, providing suppression of the non-top multijet backgrounds. The analysis is based on a data sample of proton-proton collisions at a center-of-mass energy of 7 TeV, corresponding to an integrated luminosity of 5 inverse femtobarns. Upper limits in the range of 1 pb are set on the product of the production cross section and branching fraction for a topcolor Z' modeled for several widths, as well as for a Randall--Sundrum Kaluza--Klein gluon. In addition, the results constrain any enhancement in t t-bar production beyond expectations of the standard model for t t-bar invariant masses larger than 1 TeV.Comment: Submitted to the Journal of High Energy Physics; this version includes a minor typo correction that will be submitted as an erratu