Morphodynamics in the confluence of large regulated rivers: the case of Paraná and Paranapanema Rivers

The confluence of the Paraná and Paranapanema Rivers is studied according to morphology and dynamics. It is probably the only example of this type of fluvial environment involving a large, tropical and intensive regulated river. Confluence channels were monitored along a hydrological cycle (high-low water level) in terms of morphology, flow velocity, magnitude, structure, and bedload dynamics. In this case, hydrology is controlled by the flow of the tributary, which develops a continuous and well-defined thalweg since the collector channel (a secondary channel of the Paraná River) that presents relatively large bedforms that reduce stream power by increasing roughness. Although significant differences in channel morphology were not observed along the hydrological year, bed material texture indicates that the channel bottom is suffering a slight armoring process. This is probably the reason for the large asymmetry of channel confluence where the depth of the tributary channel is larger than that of the main collector channel (the Paraná left branch). The Rosana Dam, closed in 1987 and located 26 km upstream from the confluence, is the cause of the changes in sediment transport and the generation of the channel pavement. With the closing of the Porto Primavera Dam (2000) in the Paraná River (27 km upstream from the confluence) a new morphodynamics is foreseen for this environment, and this paper can be seen a relevant pioneer reference for environmental monitoring and management

Is the expansion of sugarcane over pasturelands a sustainable strategy for Brazil's bioenergy industry?

The authors gratefully thank the São Paulo Research Foundation (FAPESP) (grants # 2014/08632-9 # 2015/14122-6, # 2013/17581-6, # 2014/16612-8 and 2018/09845-7) for the scholarship granted while this research was carried out, and CNPq (grants # 402992/2013-0 and # 311661/2014-9) for the financial support of the present research. Anonymous reviewers are also thanked for their valuable criticisms and comments, which led to substantial improvements of this manuscript.Peer reviewedPostprintPostprin

Biopsy confirmation of metastatic sites in breast cancer patients:clinical impact and future perspectives

Determination of hormone receptor (estrogen receptor and progesterone receptor) and human epidermal growth factor receptor 2 status in the primary tumor is clinically relevant to define breast cancer subtypes, clinical outcome,and the choice of therapy. Retrospective and prospective studies suggest that there is substantial discordance in receptor status between primary and recurrent breast cancer. Despite this evidence and current recommendations,the acquisition of tissue from metastatic deposits is not routine practice. As a consequence, therapeutic decisions for treatment in the metastatic setting are based on the features of the primary tumor. Reasons for this attitude include the invasiveness of the procedure and the unreliable outcome of biopsy, in particular for biopsies of lesions at complex visceral sites. Improvements in interventional radiology techniques mean that most metastatic sites are now accessible by minimally invasive methods, including surgery. In our opinion, since biopsies are diagnostic and changes in biological features between the primary and secondary tumors can occur, the routine biopsy of metastatic disease needs to be performed. In this review, we discuss the rationale for biopsy of suspected breast cancer metastases, review issues and caveats surrounding discordance of biomarker status between primary and metastatic tumors, and provide insights for deciding when to perform biopsy of suspected metastases and which one (s) to biopsy. We also speculate on the future translational implications for biopsy of suspected metastatic lesions in the context of clinical trials and the establishment of bio-banks of biopsy material taken from metastatic sites. We believe that such bio-banks will be important for exploring mechanisms of metastasis. In the future,advances in targeted therapy will depend on the availability of metastatic tissue

Targeted inhibitors and antibody immunotherapies: Novel therapies for paediatric leukaemia and lymphoma

Despite improved outcomes achieved in the last decades for children with newly diagnosed leukaemia and lymphoma, treatment of patients with refractory/relapsed disease remains a challenge. The cure rate is still unsatisfactory and often achieved at the cost of significant morbidity. Exploring treatment with novel agents should offer less toxic therapeutic options, without compromising efficacy. Bispecific and antibody-drug conjugates targeting CD19 and CD22 (blinatumomab and inotuzumab ozogamicin) play an important role in the treatment of relapsed and refractory B-cell precursor acute lymphoblastic leukaemia (BCP-ALL); antibodies targeting CD123 and CD38 are also under investigation for acute myeloid leukaemia (AML) and T-ALL, respectively. Targeted therapy with small molecules is of primary importance for specific genetic subtypes, such as BCR-ABL-positive ALL, FLT3-ITD AML and anaplastic lymphoma kinase (ALK)-positive anaplastic large cell lymphoma. KMT2A-directed targeted therapy with menin inhibitors holds promise to be of relevance in KMT2A-rearranged leukaemias, known to have dismal prognosis. Target inhibition in cellular pathways such as BCL-2, RAS, MEK, Bruton's tyrosine kinase, JAK-STAT or CDK4/CDK6 inhibition may be suitable for different diseases with common mutated pathways. Nevertheless, development and approval of new agents for paediatric cancers lags behind adult therapeutic options. New regulations were implemented to accelerate drug development for children. Considering the number of oncology medicinal products available for adults and the rarity of paediatric cancers, prioritisation based on scientific evidence and medical need, as well as international collaboration, is critical. Herein, we review the current status of drug development for children with leukaemia and lymphoma, excluding cellular therapy despite its well-known significance

The Diamond STING server

Diamond STING is a new version of the STING suite of programs for a comprehensive analysis of a relationship between protein sequence, structure, function and stability. We have added a number of new functionalities by both providing more structure parameters to the STING Database and by improving/expanding the interface for enhanced data handling. The integration among the STING components has also been improved. A new key feature is the ability of the STING server to handle local files containing protein structures (either modeled or not yet deposited to the Protein Data Bank) so that they can be used by the principal STING components: (Java)Protein Dossier ((J)PD) and STING Report. The current capabilities of the new STING version and a couple of biologically relevant applications are described here. We have provided an example where Diamond STING identifies the active site amino acids and folding essential amino acids (both previously determined by experiments) by filtering out all but those residues by selecting the numerical values/ranges for a set of corresponding parameters. This is the fundamental step toward a more interesting endeavor—the prediction of such residues. Diamond STING is freely accessible at and

Iron(III) porphyrin covalently supported onto magnetic amino-functionalized nanospheres as catalyst for hydrocarbon and herbicide oxidations

This work describes the covalent immobilization of an ironporphyrin, 5,10,15,20- tetrakis(pentafluorophenyl)porphyrin iron(III) chloride (FeTFPP), onto maghemite/silica magnetic nanospheres covered with aminofunctionalized silica. The resulting material (γ-Fe2O3/SiO2-NHFeP) was characterized by diffuse reflectance infrared spectroscopy (DRIFTS) and UV-Vis absorption spectroscopy. The catalytic activity of this magnetic ironporphyrin was investigated in the oxidation of hydrocarbons (styrene, (Z)-cyclooctene and R-(+)-limonene) and an herbicide (simazine) by hydrogen peroxide or 3-chloroperoxybenzoic acid. Hydrocarbon and simazine oxidation reaction products were analyzed by gas chromatography (GC) and high performance liquid chromatography (HPLC), respectively. This catalytic system proved to be efficient and selective for hydrocarbon oxidation, leading to high product yields from styrene (89%), cyclooctene (71%) and R-(+)-limonene (86%). Simazine oxidation was attained with 100% selectivity for a dechlorinated product (OEAT), while several oxidation products were obtained for the same catalyst in homogeneous media. The catalyst can be easily recovered through application of an external magnetic field and washed after reaction. Catalyst reuse experiments for R-(+)-limonene oxidation have shown that the catalytic activity is kept at 90% after 10 consecutive reactions

Control of star formation by supersonic turbulence

Understanding the formation of stars in galaxies is central to much of modern astrophysics. For several decades it has been thought that stellar birth is primarily controlled by the interplay between gravity and magnetostatic support, modulated by ambipolar diffusion. Recently, however, both observational and numerical work has begun to suggest that support by supersonic turbulence rather than magnetic fields controls star formation. In this review we outline a new theory of star formation relying on the control by turbulence. We demonstrate that although supersonic turbulence can provide global support, it nevertheless produces density enhancements that allow local collapse. Inefficient, isolated star formation is a hallmark of turbulent support, while efficient, clustered star formation occurs in its absence. The consequences of this theory are then explored for both local star formation and galactic scale star formation. (ABSTRACT ABBREVIATED)Comment: Invited review for "Reviews of Modern Physics", 87 pages including 28 figures, in pres

MAMBO Mapping of Spitzer c2d Small Clouds and Cores

AIMS: To study the structure of nearby (< 500 pc) dense starless and star-forming cores with the particular goal to identify and understand evolutionary trends in core properties, and to explore the nature of Very Low Luminosity Objects (< 0.1 L_sun; VeLLOs). METHODS: Using the MAMBO bolometer array, we create maps unusually sensitive to faint (few mJy per beam) extended (approx. 5 arcmin) thermal dust continuum emission at 1.2 mm wavelength. Complementary information on embedded stars is obtained from Spitzer, IRAS, and 2MASS. RESULTS: Our maps are very rich in structure, and we characterize extended emission features (``subcores'') and compact intensity peaks in our data separately to pay attention to this complexity. We derive, e.g., sizes, masses, and aspect ratios for the subcores, as well as column densities and related properties for the peaks. Combination with archival infrared data then enables the derivation of bolometric luminosities and temperatures, as well as envelope masses, for the young embedded stars. CONCLUSIONS: (abridged) Starless and star-forming cores occupy the same parameter space in many core properties; a picture of dense core evolution in which any dense core begins to actively form stars once it exceeds some fixed limit in, e.g., mass, density, or both, is inconsistent with our data. Comparison of various evolutionary indicators for young stellar objects in our sample (e.g., bolometric temperatures) reveals inconsistencies between some of them, possibly suggesting a revision of some of these indicators.Comment: Accepted to A&A. In total 46 pages, with 20 pages of tables, figures, and appendices. High-resolution version of this article at https://www.xythosondemand.com/home/harvard_iic/Users/jkauffma/Public/mambo_spitzer.pd

A First Search for coincident Gravitational Waves and High Energy Neutrinos using LIGO, Virgo and ANTARES data from 2007

We present the results of the first search for gravitational wave bursts associated with high energy neutrinos. Together, these messengers could reveal new, hidden sources that are not observed by conventional photon astronomy, particularly at high energy. Our search uses neutrinos detected by the underwater neutrino telescope ANTARES in its 5 line configuration during the period January - September 2007, which coincided with the fifth and first science runs of LIGO and Virgo, respectively. The LIGO-Virgo data were analysed for candidate gravitational-wave signals coincident in time and direction with the neutrino events. No significant coincident events were observed. We place limits on the density of joint high energy neutrino - gravitational wave emission events in the local universe, and compare them with densities of merger and core-collapse events.Comment: 19 pages, 8 figures, science summary page at http://www.ligo.org/science/Publication-S5LV_ANTARES/index.php. Public access area to figures, tables at https://dcc.ligo.org/cgi-bin/DocDB/ShowDocument?docid=p120000