Complete Genome Sequence of Crohn's Disease-Associated Adherent-Invasive E. coli Strain LF82

International audienceBACKGROUND: Ileal lesions of Crohn's disease (CD) patients are abnormally colonized by pathogenic adherent-invasive Escherichia coli (AIEC) able to invade and to replicate within intestinal epithelial cells and macrophages. PRINCIPAL FINDINGS: We report here the complete genome sequence of E. coli LF82, the reference strain of adherent-invasive E. coli associated with ileal Crohn's disease. The LF82 genome of 4,881,487 bp total size contains a circular chromosome with a size of 4,773,108 bp and a plasmid of 108,379 bp. The analysis of predicted coding sequences (CDSs) within the LF82 flexible genome indicated that this genome is close to the avian pathogenic strain APEC_01, meningitis-associated strain S88 and urinary-isolated strain UTI89 with regards to flexible genome and single nucleotide polymorphisms in various virulence factors. Interestingly, we observed that strains LF82 and UTI89 adhered at a similar level to Intestine-407 cells and that like LF82, APEC_01 and UTI89 were highly invasive. However, A1EC strain LF82 had an intermediate killer phenotype compared to APEC-01 and UTI89 and the LF82 genome does not harbour most of specific virulence genes from ExPEC. LF82 genome has evolved from those of ExPEC B2 strains by the acquisition of Salmonella and Yersinia isolated or clustered genes or CDSs located on pLF82 plasmid and at various loci on the chromosome. CONCLUSION: LF82 genome analysis indicated that a number of genes, gene clusters and pathoadaptative mutations which have been acquired may play a role in virulence of AIEC strain LF82

Dimethylsulfoniopropionate biosynthesis in marine bacteria and identification of the key gene in this process

Dimethylsulphoniopropionate (DMSP) is one of the Earth’s most abundant organosulphur molecules, a signalling molecule, a key nutrient for marine microorganisms, and the major precursor for gaseous dimethyl sulphide (DMS). DMS, another infochemical in signalling pathways, is important in global sulphur cycling2, and affects the Earth’s albedo, and potentially climate, via sulphate aerosol and cloud condensation nuclei production. It was thought that only eukaryotes produce significant amounts of DMSP, but here we demonstrate that many marine heterotrophic bacteria also produce DMSP, likely using the same methionine (Met) transamination pathway as macroalgae and phytoplankton10. We identify the first DMSP synthesis gene in any organism, dsyB, which encodes the key methyltransferase enzyme of this pathway and is a reliable reporter for bacterial DMSP synthesis in marine alphaproteobacteria. DMSP production and dsyB transcription are upregulated by increased salinity, nitrogen limitation and lower temperatures in our model DMSP-producing bacterium Labrenzia aggregata LZB033. With significant numbers of dsyB homologues in marine metagenomes, we propose that bacteria likely make a significant contribution to oceanic DMSP production. Furthermore, since DMSP production is not solely associated with obligate phototrophs, the process need not be confined to the photic zones of marine environments, and as such may have been underestimate

Peralkaline Felsic Magmatism of the Atlantic Islands

The oceanic-island magmatic systems of the Atlantic Ocean exhibit significant diversity in their respective sizes, ages, and the compositional ranges of their eruptive products. Nevertheless, almost all of the Atlantic islands and island groups have produced peralkaline felsic magmas, implying that similar petrogenetic regimes may be operating throughout the Atlantic Ocean, and arguably elsewhere. The origins of peralkaline magmas are frequently linked to low-degree partial melting of enriched mantle, followed by protracted differentiation in the shallow crust. However, additional petrogenetic processes such as magma mixing, crustal melting, and contamination have been identified at numerous peralkaline centers. The onset of peralkalinity leads to magma viscosities lower than those typical for metaluminous felsic magmas, which has profound implications for processes such as crystal settling. This study represents a compilation of published and original data which demonstrates trends that suggest that the peralkaline magmas of the Atlantic Ocean islands are generated primarily via extended (up to ∼ 95%), open system fractional crystallization of mantle-derived mafic magmas. Crustal assimilation is likely to become more significant as the system matures and fusible material accumulates in the crust. Magma mixing may occur between various compositional end-members and may be recognized via hybridized intermediate magmas. The peralkaline magmas are hydrous, and frequently zoned in composition, temperature, and/or water content. They are typically stored in shallow crustal magma reservoirs (∼ 2–5 km), maintained by mafic replenishment. Low melt viscosities (1 × 101.77 to 1 × 104.77 Pa s) facilitate two-phase flow, promoting the formation of alkali-feldspar crystal mush. This mush may then contribute melt to an overlying melt lens via filter pressing or partial melting. We utilize a three-stage model to account for the establishment, development, and termination of peralkaline magmatism in the ocean island magmatic systems of the Atlantic. We suggest that the overall control on peralkaline magmatism in the Atlantic is magma flux rate, which controls the stability of upper crustal magma reservoirs. The abundance of peralkaline magmas in the Atlantic suggests that their development must be a common, but not inevitable, stage in the evolution of ocean islands

Functional assessment of β adrenoceptor subtypes in human colonic circular and longitudinal (taenia coli) smooth muscle

BACKGROUND AND AIMS—The subtype and species related heterogeneity of β adrenoceptors prompted a functional reappraisal of these molecular targets of motility inhibition in the human colon.
METHODS—Relaxation of muscle strips was measured in vitro.
RESULTS—The following agonists had decreasing relaxing potency (effective concentration range 10(−8)-10(−4) mol/l): (−)isoprenaline (non-selective), terbutaline (β(2) selective), CGP 12177 (β(3) selective, also β(1), β(2) antagonist), and SR 58611A (β(3) selective). Isoprenaline and terbutaline were more potent on circular than taenia strips; CGP 12177 and SR 58611A weakly and partially relaxed taenia but had little effect on circular strips. The potency of isoprenaline on circular strips was greatly reduced by the β(1) selective antagonist CGP 20712 (10(−7) mol/l), and less so by ICI 118551 (10(−7) mol/l, β(2) selective). CGP 20712 and ICI 118551 together (both 3×10(-6) mol/l) had no effect on taenia relaxation by SR 58611A and rendered isoprenaline and terbutaline virtually inactive on circular strips, although not on taenia, which was relaxed at higher than control concentrations and maximally by isoprenaline. Propranolol, a β(1), β(2) non-selective antagonist, at high concentrations (10(-5) mol/l) prevented taenia relaxation by CGP 12177 and SR 58611A; its quantitative antagonism of isoprenaline (in common with that of CGP 12177 used as an antagonist) was competitive in circular strips but not on taenia.
CONCLUSIONS—β(1), β(2), and β(3) adrenoceptors are functionally detectable in the human colon; agonist stimulation of any one type relaxed taenia but only isoprenaline was fully effective at the β(3) subtype.


Keywords: β adrenoceptor subtypes; human colon; smooth muscle; taenia col