Crystallization and preliminary X-ray diffraction characterization of the XccFimXEAL-c-di-GMP and XccFimXEAL-c-di-GMP-XccPilZ complexes from Xanthomonas campestris

c-di-GMP is a major secondary-messenger molecule in regulation of bacterial pathogenesis. Therefore, the c-di-GMP-mediated signal transduction network is of considerable interest. The PilZ domain was the first c-di-GMP receptor to be predicted and identified. However, every PilZ domain binds c-di-GMP with a different binding affinity. Intriguingly, a noncanonical PilZ domain has recently been found to serve as a mediator to link FimXEAL to the PilB or PilT ATPase to control the function of type IV pili (T4P). It is thus essential to determine the structure of the FimXEALPilZ complex in order to determine how the binding of c-di-GMP to the FimXEAL domain induces conformational change of the adjoining noncanonical PilZ domain, which may transmit information to PilB or PilT to control T4P function. Here, the preparation and preliminary X-ray diffraction studies of the XccFimXEALc-di-GMP and XccFimXEALc-di-GMPXccPilZ complexes from Xcc (Xanthomonas campestris pv. campesteris) are reported. Detailed studies of these complexes may allow a more thorough understanding of how c-di-GMP transmits its effects through the degenerate EAL domain and the noncanonical PilZ domain

Distribution and density of the partition function zeros for the diamond-decorated Ising model

Exact renormalization map of temperature between two successive decorated lattices is given, and the distribution of the partition function zeros in the complex temperature plane is obtained for any decoration-level. The rule governing the variation of the distribution pattern as the decoration-level changes is given. The densities of the zeros for the first two decoration-levels are calculated explicitly, and the qualitative features about the densities of higher decoration-levels are given by conjecture. The Julia set associated with the renormalization map is contained in the distribution of the zeros in the limit of infinite decoration level, and the formation of the Julia set in the course of increasing the decoration-level is given in terms of the variations of the zero density.Comment: 8 pages,8figure

Fluctuations and Dissipation of Coherent Magnetization

A quantum mechanical model is used to derive a generalized Landau-Lifshitz equation for a magnetic moment, including fluctuations and dissipation. The model reproduces the Gilbert-Brown form of the equation in the classical limit. The magnetic moment is linearly coupled to a reservoir of bosonic degrees of freedom. Use of generalized coherent states makes the semiclassical limit more transparent within a path-integral formulation. A general fluctuation-dissipation theorem is derived. The magnitude of the magnetic moment also fluctuates beyond the Gaussian approximation. We discuss how the approximate stochastic description of the thermal field follows from our result. As an example, we go beyond the linear-response method and show how the thermal fluctuations become anisotropy-dependent even in the uniaxial case.Comment: 22 page

Probing For New Physics and Detecting non linear vacuum QED effects using gravitational wave interferometer antennas

Low energy non linear QED effects in vacuum have been predicted since 1936 and have been subject of research for many decades. Two main schemes have been proposed for such a 'first' detection: measurements of ellipticity acquired by a linearly polarized beam of light passing through a magnetic field and direct light-light scattering. The study of the propagation of light through an external field can also be used to probe for new physics such as the existence of axion-like particles and millicharged particles. Their existence in nature would cause the index of refraction of vacuum to be different from unity in the presence of an external field and dependent of the polarization direction of the light propagating. The major achievement of reaching the project sensitivities in gravitational wave interferometers such as LIGO an VIRGO has opened the possibility of using such instruments for the detection of QED corrections in electrodynamics and for probing new physics at very low energies. In this paper we discuss the difference between direct birefringence measurements and index of refraction measurements. We propose an almost parasitic implementation of an external magnetic field along the arms of the VIRGO interferometer and discuss the advantage of this choice in comparison to a previously proposed configuration based on shorter prototype interferometers which we believe is inadequate. Considering the design sensitivity in the strain, for the near future VIRGO+ interferometer, of $h<2\cdot10^{-23} \frac{1}{\sqrt{\rm Hz}}$ in the range 40 Hz $- 400$ Hz leads to a variable dipole magnet configuration at a frequency above 20 Hz such that $B^{2}D \ge 13000$ T$^{2}$m/$\sqrt{\rm Hz}$ for a `first' vacuum non linear QED detection

Global Search for New Physics with 2.0/fb at CDF

Data collected in Run II of the Fermilab Tevatron are searched for indications of new electroweak-scale physics. Rather than focusing on particular new physics scenarios, CDF data are analyzed for discrepancies with the standard model prediction. A model-independent approach (Vista) considers gross features of the data, and is sensitive to new large cross-section physics. Further sensitivity to new physics is provided by two additional algorithms: a Bump Hunter searches invariant mass distributions for "bumps" that could indicate resonant production of new particles; and the Sleuth procedure scans for data excesses at large summed transverse momentum. This combined global search for new physics in 2.0/fb of ppbar collisions at sqrt(s)=1.96 TeV reveals no indication of physics beyond the standard model.Comment: 8 pages, 7 figures. Final version which appeared in Physical Review D Rapid Communication

Observation of Orbitally Excited B_s Mesons

We report the first observation of two narrow resonances consistent with states of orbitally excited (L=1) B_s mesons using 1 fb^{-1} of ppbar collisions at sqrt{s} = 1.96 TeV collected with the CDF II detector at the Fermilab Tevatron. We use two-body decays into K^- and B^+ mesons reconstructed as B^+ \to J/\psi K^+, J/\psi \to \mu^+ \mu^- or B^+ \to \bar{D}^0 \pi^+, \bar{D}^0 \to K^+ \pi^-. We deduce the masses of the two states to be m(B_{s1}) = 5829.4 +- 0.7 MeV/c^2 and m(B_{s2}^*) = 5839.7 +- 0.7 MeV/c^2.Comment: Version accepted and published by Phys. Rev. Let

Search for a W' boson decaying to a bottom quark and a top quark in pp collisions at sqrt(s) = 7 TeV

Results are presented from a search for a W' boson using a dataset corresponding to 5.0 inverse femtobarns of integrated luminosity collected during 2011 by the CMS experiment at the LHC in pp collisions at sqrt(s)=7 TeV. The W' boson is modeled as a heavy W boson, but different scenarios for the couplings to fermions are considered, involving both left-handed and right-handed chiral projections of the fermions, as well as an arbitrary mixture of the two. The search is performed in the decay channel W' to t b, leading to a final state signature with a single lepton (e, mu), missing transverse energy, and jets, at least one of which is tagged as a b-jet. A W' boson that couples to fermions with the same coupling constant as the W, but to the right-handed rather than left-handed chiral projections, is excluded for masses below 1.85 TeV at the 95% confidence level. For the first time using LHC data, constraints on the W' gauge coupling for a set of left- and right-handed coupling combinations have been placed. These results represent a significant improvement over previously published limits.Comment: Submitted to Physics Letters B. Replaced with version publishe

Search for the standard model Higgs boson decaying into two photons in pp collisions at sqrt(s)=7 TeV

A search for a Higgs boson decaying into two photons is described. The analysis is performed using a dataset recorded by the CMS experiment at the LHC from pp collisions at a centre-of-mass energy of 7 TeV, which corresponds to an integrated luminosity of 4.8 inverse femtobarns. Limits are set on the cross section of the standard model Higgs boson decaying to two photons. The expected exclusion limit at 95% confidence level is between 1.4 and 2.4 times the standard model cross section in the mass range between 110 and 150 GeV. The analysis of the data excludes, at 95% confidence level, the standard model Higgs boson decaying into two photons in the mass range 128 to 132 GeV. The largest excess of events above the expected standard model background is observed for a Higgs boson mass hypothesis of 124 GeV with a local significance of 3.1 sigma. The global significance of observing an excess with a local significance greater than 3.1 sigma anywhere in the search range 110-150 GeV is estimated to be 1.8 sigma. More data are required to ascertain the origin of this excess.Comment: Submitted to Physics Letters

Measurement of the Lambda(b) cross section and the anti-Lambda(b) to Lambda(b) ratio with Lambda(b) to J/Psi Lambda decays in pp collisions at sqrt(s) = 7 TeV

The Lambda(b) differential production cross section and the cross section ratio anti-Lambda(b)/Lambda(b) are measured as functions of transverse momentum pt(Lambda(b)) and rapidity abs(y(Lambda(b))) in pp collisions at sqrt(s) = 7 TeV using data collected by the CMS experiment at the LHC. The measurements are based on Lambda(b) decays reconstructed in the exclusive final state J/Psi Lambda, with the subsequent decays J/Psi to an opposite-sign muon pair and Lambda to proton pion, using a data sample corresponding to an integrated luminosity of 1.9 inverse femtobarns. The product of the cross section times the branching ratio for Lambda(b) to J/Psi Lambda versus pt(Lambda(b)) falls faster than that of b mesons. The measured value of the cross section times the branching ratio for pt(Lambda(b)) > 10 GeV and abs(y(Lambda(b))) < 2.0 is 1.06 +/- 0.06 +/- 0.12 nb, and the integrated cross section ratio for anti-Lambda(b)/Lambda(b) is 1.02 +/- 0.07 +/- 0.09, where the uncertainties are statistical and systematic, respectively.Comment: Submitted to Physics Letters