49 research outputs found
Exploring the statically screened G3W2 correction to the GW self-energy: Charged excitations and total energies of finite systems
Electron correlation in finite and extended systems is often described in an
effective single-particle framework within the approximation. Here, we use
the statically screened second-order exchange contribution to the self-energy
() to calculate a perturbative correction to the self-energy. We use
this correction to calculate total correlation energies of atoms, relative
energies, as well as charged excitations of a wide range of molecular systems.
We show that the second-order correction improves correlation energies with
respect to the RPA and also improves relative energies for many, but not all
considered systems. While the full contribution does not give consistent
improvements over , taking the average of and generally
gives excellent results. Improvements over quasiparticle self-consistent ,
which we show to give very accurate charged excitations in small and medium
molecules by itself, are only minor. quasiparticle energies evaluated
with eigenvalue and orbitals from range-separated hybrids, however, are
tremendously improved upon: The second-order corrected outperforms all
existing methods for the systems considered herein and also does not come
with substantially increased computational cost compared to for
systems with up to 100 atoms.Comment: Revised version as accepted by Physical review B (Phys. Rev. B 2022,
105, 125121, 10.1103/PhysRevB.105.125121) Compared to our first submission, a
programming mistake in our first implementation has been corrected leading to
different (better) result
Low-order Scaling by Pair Atomic Density Fitting
We derive a low-scaling algorithm for molecules, using pair atomic
density fitting (PADF) and an imaginary time representation of the Green's
function and describe its implementation in the Slater type orbital (STO) based
Amsterdam density functional (ADF) electronic structure code. We demonstrate
the scalability of our algorithm on a series of water clusters with up to 432
atoms and 7776 basis functions and observe asymptotic quadratic scaling with
realistic threshold qualities controlling distance effects and basis sets of
triple- (TZ) plus double polarization quality. Also owing to a very
small prefactor, with these settings a calculation for the largest of
these clusters takes only 240 CPU hours. With errors of 0.24 eV for HOMO
energies in the GW100 database on the quadruple- level, our
implementation is less accurate than canonical all-electron implementations
using the larger def2-QZVP GTO-tpye basis set. Apart from basis set errors,
this is related to the well-known shortcomings of the GW space-time method
using analytical continuation techniques as well as to numerical issues of the
PADF-approach of accurately representing diffuse AO-products. We speculate,
that these difficulties might be overcome by using optimized auxiliary fit sets
with more diffuse functions of higher angular momenta. Despite these
shortcomings, for subsets of medium and large molecules from the GW5000
database, the error of our approach using basis sets of TZ and augmented DZ
quality is decreasing with system size. On the augmented DZ level we reproduce
canonical, complete basis set limit extrapolated reference values with an
accuracy of 80 meV on average for a set of 20 large organic molecules. We
anticipate our algorithm, in its current form, to be very useful in the study
of single-particle properties of large organic systems such as chromophores and
acceptor molecules.Comment: final version as accepted by JCTC
https://pubs.acs.org/doi/10.1021/acs.jctc.0c0069
Fully dynamic G3W2 self-energy for finite systems: Formulas and benchmark
Over the years, Hedin's self-energy has been proven to be a rather
accurate and simple approximation to evaluate electronic quasiparticle energies
in solids and in molecules. Attempts to improve over the simple
approximation, the so-called vertex corrections, have been constantly proposed
in the literature. Here, we derive, analyze, and benchmark the complete
second-order term in the screened Coulomb interaction for finite systems.
This self-energy named contains all the possible time orderings that
combine 3 Green's functions and 2 dynamic . We present the analytic
formula and its imaginary frequency counterpart, the latter allowing us to
treat larger molecules. The accuracy of the self-energy is evaluated on
well-established benchmarks (GW100, Acceptor 24 and Core 65) for valence and
core quasiparticle energies. Its link with the simpler static approximation,
named SOSEX for static screened second-order exchange, is analyzed, which leads
us to propose a more consistent approximation named 2SOSEX. In the end, we find
that neither the self-energy nor any of the investigated approximations
to it improve over one-shot with a good starting point. Only
quasi-particle self-consistent HOMO energies are slightly improved by
addition of the self-energy correction. We show that this is due to the
self-consistent update of the screened Coulomb interaction leading to an
overall sign change of the vertex correction to the frontier quasiparticle
energies
GW100: A Slater Type Orbital Perspective
We calculate complete basis set (CBS) limit extrapolated ionization
potentials (IP) and electron affinities (EA) with Slater Type Basis sets for
the molecules in the GW100 database. To this end, we present two new Slater
Type orbital (STO) basis sets of triple- (TZ) and quadruple- (QZ)
quality whose polarization is adequate for correlated-electron methods and
which contain extra diffuse functions to be able to correctly calculate
electron affinities of molecules with a positive Lowest Unoccupied Molecular
Orbital (LUMO). We demonstrate, that going from TZ to QZ quality consistently
reduces the basis set error of our computed IPs and EAs and we conclude that a
good estimate of these quantities at the CBS limit can be obtained by
extrapolation. With MADs from 70 to 85 meV, our CBS limit extrapolated
ionization potentials are in good agreement with results from FHI-AIMS,
TURBOMOLE, VASP and WEST while they differ by more than 130 meV on average from
nanoGW. With a MAD of 160 meV, our electron affinities are also in good
agreement with the WEST code. Especially for systems with positive LUMOs, the
agreement is excellent. With respect to other codes, the STO type basis sets
generally underestimate EAs of small molecules with strongly bound LUMOs. With
62 meV for IPs and 93 meV for EAs, we find much better agreement to CBS limit
extrapolated results from FHI-AIMS for a set of 250 medium to large organic
molecules.Comment: Published open access by Journal of chemical theory and computatio
Towards Pair Atomic Density Fitting for Correlation Energies with Benchmark Accuracy
Pair atomic density fitting (PADF) is a promising strategy to reduce the
scaling with system size of quantum chemical methods for the calculation of the
correlation energy like the direct random phase approximation (RPA) or
second-order M{\o}ller-Plesset perturbation theory (MP2). PADF can however
introduce large errors in correlation energies as the two-electron interaction
energy is not guaranteed to be bounded from below. This issue can be partially
alleviated by using very large fit sets, but this comes at the price of reduced
efficiency and having to deal with near-linear dependencies in the fit set. In
this work, we introduce an alternative methodology to overcome this problem
that preserves the intrinsically favourable scaling of PADF. We first
regularize the Fock matrix by projecting out parts of the basis set which gives
rise to orbital products that are hard to describe by PADF. We then also apply
this projector to the orbital coefficient matrix to improve the precision of
PADF-MP2 and PADF-RPA. We systematically assess the accuracy of this new
approach in a numerical atomic orbital framework using Slater Type Orbitals
(STO) and correlation consistent Gaussian type basis sets up to
quintuple- quality for systems with more than 200 atoms. For the small
and medium systems in the S66 database we show the maximum deviation of
PADF-MP2 and PADF-RPA relative correlation energies to DF-MP2 and DF-RPA
reference results to be 0.07 and 0.14 kcal/mol respectively. When the new
projector method is used, the errors only slightly increase for large molecules
and also when moderately sized fit sets are used the resulting errors are well
under control. Finally, we demonstrate the computational efficiency of our
algorithm by calculating the interaction energies of non-covalently bound
complexes with more than 1000 atoms and 20000 atomic orbitals at the
RPA@PBE/CC-pVTZ level of theory
Fluoxetine targets an allosteric site in the enterovirus 2C AAA+ ATPase and stabilizes a ring-shaped hexameric complex
Enteroviruses are globally prevalent human pathogens responsible for many diseases. The nonstructural protein 2C is a AAA+ helicase and plays a key role in enterovirus replication. Drug repurposing screens identified 2C-targeting compounds such as fluoxetine and dibucaine, but how they inhibit 2C is unknown. Here, we present a crystal structure of the soluble and monomeric fragment of coxsackievirus B3 2C protein in complex with (S)-fluoxetine (SFX), revealing an allosteric binding site. To study the functional consequences of SFX binding, we engineered an adenosine triphosphatase (ATPase)-competent, hexameric 2C protein. Using this system, we show that SFX, dibucaine, HBB [2-(α-hydroxybenzyl)-benzimidazole], and guanidine hydrochloride inhibit 2C ATPase activity. Moreover, cryo-electron microscopy analysis demonstrated that SFX and dibucaine lock 2C in a defined hexameric state, rationalizing their mode of inhibition. Collectively, these results provide important insights into 2C inhibition and a robust engineering strategy for structural, functional, and drug-screening analysis of 2C proteins
Search for dark matter produced in association with bottom or top quarks in √s = 13 TeV pp collisions with the ATLAS detector
A search for weakly interacting massive particle dark matter produced in association with bottom or top quarks is presented. Final states containing third-generation quarks and miss- ing transverse momentum are considered. The analysis uses 36.1 fb−1 of proton–proton collision data recorded by the ATLAS experiment at √s = 13 TeV in 2015 and 2016. No significant excess of events above the estimated backgrounds is observed. The results are in- terpreted in the framework of simplified models of spin-0 dark-matter mediators. For colour- neutral spin-0 mediators produced in association with top quarks and decaying into a pair of dark-matter particles, mediator masses below 50 GeV are excluded assuming a dark-matter candidate mass of 1 GeV and unitary couplings. For scalar and pseudoscalar mediators produced in association with bottom quarks, the search sets limits on the production cross- section of 300 times the predicted rate for mediators with masses between 10 and 50 GeV and assuming a dark-matter mass of 1 GeV and unitary coupling. Constraints on colour- charged scalar simplified models are also presented. Assuming a dark-matter particle mass of 35 GeV, mediator particles with mass below 1.1 TeV are excluded for couplings yielding a dark-matter relic density consistent with measurements
Fabrication and Characterisation of GaAs Gunn Diode Chips for Applications at 77 GHz in Automotive Industry
GaAs-based Gunn diodes with graded AlGaAs hot electron injectorheterostructures have been developed under the special needs in automotive applications.The fabrication of the Gunn diode chips was based on total substrate removal andprocessing of integrated Au heat sinks. Especially, the thermal and RF behavior of thediodes have been analyzed by DC, impedance and S-parameter measurements. Theelectrical investigations have revealed the functionality of the hot electron injector. Anoptimized layer structure could fulfill the requirements in adaptive cruise control (ACC)systems at 77 GHz with typical output power between 50 and 90 mW
Assessment of the Second-Order Statically Screened Exchange Correction to the Random Phase Approximation for Correlation Energies
With increasing interelectronic distance, the screening of the electron-electron interaction by the presence of other electrons becomes the dominant source of electron correlation. This effect is described by the random phase approximation (RPA) which is therefore a promising method for the calculation of weak interactions. The success of the RPA relies on the cancellation of errors, which can be traced back to the violation of the crossing symmetry of the 4-point vertex, leading to strongly overestimated total correlation energies. By the addition of second-order screened exchange (SOSEX) to the correlation energy, this issue is substantially reduced. In the adiabatic connection (AC) SOSEX formalism, one of the two electron-electron interaction lines in the second-order exchange term is dynamically screened (SOSEX(W, vc)). A related SOSEX expression in which both electron-electron interaction lines are statically screened (SOSEX(W(0), W(0))) is obtained from the G3W2 contribution to the electronic self-energy. In contrast to SOSEX(W, vc), the evaluation of this correlation energy expression does not require an expensive numerical frequency integration and is therefore advantageous from a computational perspective. We compare the accuracy of the statically screened variant to RPA and RPA+SOSEX(W, vc) for a wide range of chemical reactions. While both methods fail for barrier heights, SOSEX(W(0), W(0)) agrees very well with SOSEX(W, vc) for charged excitations and noncovalent interactions where they lead to major improvements over RPA