A new species of Liolaemus related to L. nigroviridis from the Andean highlands of Central Chile (Iguania, Liolaemidae)

Indexación: Web of Science; Scopus.The Liolaemus nigroviridis group is a clade of highland lizards endemic to Chile. These species are distributed from northern to central Chile, and currently there are no cases of sympatric distribution. This study describes a new species, Liolaemus uniformis sp. n., from this group, and provides a detailed morphological characterization and mitochondrial phylogeny using cytochrome-b. Liolaemus uniformis was found in sympatry with L. nigroviridis but noticeably differed in size, scalation, and markedly in the color pattern, without sexual dichromatism. This new species has probably been confused with L. monticola and L. bellii, both of which do not belong to the nigroviridis group. The taxonomic issues of this group that remain uncertain are also discussed.https://zookeys.pensoft.net/articles.php?id=601

ESTADO ACTUAL DE LOS ESTUDIOS DE LA FLORA EN LA CORDILLERA DEL CÓNDOR Y ÁREAS ADYACENTES EN EL PERÚ, 2006

La Cordillera del Cóndor presenta alrededor de 150 km de norte al sur, con una elevación máxima de ca. 2900 m, ubicada en la frontera internacional entre Perú y Ecuador. Se encuentra en zonas de difícil acceso y las exploraciones botánicas en fase preliminar. Forma parte de la cadena discontinua de las Cordilleras Subandinas, al este de los Andes, que se extiende hacia el norte en Ecuador (cordilleras de Galeras y Cutucú) y hacia el Sur en Perú (Cordilleras Huarango, Azul, Yanachaga y otras). Estas cordilleras tienen en común ciertas características geológicas -compuestas principalmente de sedimentos terciarios y mesozoicos de rocas areniscas y calizas, con intrusiones de rocas ígneas- y florísticas endémicas solo comparable con los tepuis de los Altos de Guyana de Venezuela, un típico patrón de disyunción.En la parte peruana de la Cordillera del Cóndor, se conocen diversos estudios taxonómicos y florísticos aislados que implican especies de la región, sin embargo no existe un estudio integral de la Flora. El objetivo de este trabajo es dar a conocer el estado Actual de la Flora en la Cordillera del Cóndor y Áreas adyacentes en la parte del Perú, 2006.Actualmente se tiene una versión preliminar de ca. 6,000 registros botánicos de las Provincias Condorcanqui (Dpto. Amazonas) y San Ignacio (Dpto. Cajamarca), obtenidos en un esfuerzo conjunto entre el Herbarium Truxillense (HUT) y el Herbario del Missouri Botanical Garden (MO) en el marco del Proyecto Flora del Perú entre 1995 y 2006, así como de datos parciales de Beltrán & Foster (1994) y otros colectores. El catálogo preliminar presenta 167 familias, 694 géneros y 1382 especies. Se enfatiza que a partir de la publicación de Ulloa Ulloa y col. (2004) y Smith y col. (2005), existen 7 especies nuevas, 4 cambios taxonómicos y 86 registros nuevos para el país. El material se encuentra registrado y depositado en los siguientes herbarios: F, HUT, MO y USM (acrónimos en Holmgren y col., 1990).Palabras clave: Estado actual, Flora, Cordillera del Cóndor, Perú.ABSTRACTThe Cordillera del Condor has around 150 km from north to south, with a maximum elevation of ca. 2900 m, located at the international border between Peru and Ecuador. It is found in areas of difficult access and botanical explorations in preliminary phase. This cordillera is part of the discontinued chain of the Subandean Cordilleras, located east of the Andes, which extends northward into Ecuador (Cordilleras Cutucu and Galeras) and south in Peru (Cordilleras Huarango, Azul, Yanachaga and others). These cordilleras have in common certain geological features -composed mainly of tertiary and Mesozoic sediments of sandstone and limestone rocks, with igneous intrusions- and floristic endemic only comparable with tepuis from the Guyana Highlands of Venezuela, a typical pattern of separation. In the Peruvian side of the Cordillera del Condor, are known various taxonomic and floristic studies involving isolated species of the region, however there is no comprehensive study of the Flora. The aim of this paper is to present the current state of the Flora in the Cordillera del Condor and the adjacent areas of Peru, 2006. Nowadays there is a preliminary version of ca. 6,000 botanical records from Provinces Condorcanqui  (Amazonas department) and San Ignacio (Cajamarca department), obtained in a joint effort between Herbarium Truxillense (HUT) and the Missouri Botanical Garden Herbarium (MO) under the Flora of Peru Project between 1995 and 2006 and partial data Beltran & Foster (1994) and other collectors. The preliminary list has 167 families, 694 genera and 1382 species. It is emphasized that after the publication of Ulloa Ulloa et al. (2004) and Smith et al. (2005), there are 7 new species, 4 taxonomic changes and 86 new records for the country. The material is recorded and deposited in the following herbaria: F, HUT, MO, and USM (acronyms in Holmgren et al., 1990).Keywords: Present state, Flora, Cordillera del Condor, Peru

Árboles del Santuario Histórico de Machu Picchu: Monitoreo de diversidad y carbono a largo plazo

Understanding how the richness, diversity, and carbon monitoring vary and are distributed through altitudinal gradients in Andean montane forests is essential to understand how these forests are adapting to global warming effects. Botanical explorations and general collections were carried out within the limits of the Historic Sanctuary of Machu Picchu in an altitude gradient of 1600 to 4200 m.a.s.l. Two permanent plots of 1.0 ha were established in the sectors of Intipunku (SHM – 01) at an altitude of 2,653 m.a.s.l and Kantupata (SHM-02) at an altitude of 3,200 m.a.s.l., with the standardized methodology of RAINFOR in 2013 and remedied in 2016. We updated the number of tree species for the Historic Sanctuary of Machu Picchu, 364 species are reported so far, this catalog includes all wild and cultivated species but also tree ferns and palm trees. In recent years, four new tree species have been described whose TYPE collections come from SHM forests: Ocotea alveatavan der Werff, Ocotea mollivillosavan der Werff (Lauraceae), Bunchosia cuscanaW.R. Anderson (Malpighiaceae), Ficus machupicchuensisC.C. Berg (Moraceae). In the two permanent plots, a total of 69 species were recorded in 1286 individuals. Individually in the SHM – 01 plot, 26 families, 36 genera and 45 species were recorded in 682 individuals; and in the SHM – 02 plot: 22 families, 28 genera and 31 species in 604 individuals. Stored aerial biomass was higher in the Intipunku sector (146 Mg ha-1) compared to Kantupata sector (101 Mg ha-1). Our research shows that the Andean forests of Machu Picchu provide important ecosystem services, and there is still much to do in terms of scientic research. The continued discovery of new tree species in the locality demonstrates the need for conservation to protect forests that support some of the highest levels of endemism in the world

Epidemiological trends of HIV/HCV coinfection in Spain, 2015-2019

Altres ajuts: Spanish AIDS Research Network; European Funding for Regional Development (FEDER).Objectives: We assessed the prevalence of anti-hepatitis C virus (HCV) antibodies and active HCV infection (HCV-RNA-positive) in people living with HIV (PLWH) in Spain in 2019 and compared the results with those of four similar studies performed during 2015-2018. Methods: The study was performed in 41 centres. Sample size was estimated for an accuracy of 1%. Patients were selected by random sampling with proportional allocation. Results: The reference population comprised 41 973 PLWH, and the sample size was 1325. HCV serostatus was known in 1316 PLWH (99.3%), of whom 376 (28.6%) were HCV antibody (Ab)-positive (78.7% were prior injection drug users); 29 were HCV-RNA-positive (2.2%). Of the 29 HCV-RNA-positive PLWH, infection was chronic in 24, it was acute/recent in one, and it was of unknown duration in four. Cirrhosis was present in 71 (5.4%) PLWH overall, three (10.3%) HCV-RNA-positive patients and 68 (23.4%) of those who cleared HCV after anti-HCV therapy (p = 0.04). The prevalence of anti-HCV antibodies decreased steadily from 37.7% in 2015 to 28.6% in 2019 (p < 0.001); the prevalence of active HCV infection decreased from 22.1% in 2015 to 2.2% in 2019 (p < 0.001). Uptake of anti-HCV treatment increased from 53.9% in 2015 to 95.0% in 2019 (p < 0.001). Conclusions: In Spain, the prevalence of active HCV infection among PLWH at the end of 2019 was 2.2%, i.e. 90.0% lower than in 2015. Increased exposure to DAAs was probably the main reason for this sharp reduction. Despite the high coverage of treatment with direct-acting antiviral agents, HCV-related cirrhosis remains significant in this population

Comparative genomics reveals insights into avian genome evolution and adaptation

Birds are the most species-rich class of tetrapod vertebrates and have wide relevance across many research fields. We explored bird macroevolution using full genomes from 48 avian species representing all major extant clades. The avian genome is principally characterized by its constrained size, which predominantly arose because of lineage-specific erosion of repetitive elements, large segmental deletions, and gene loss. Avian genomes furthermore show a remarkably high degree of evolutionary stasis at the levels of nucleotide sequence, gene synteny, and chromosomal structure. Despite this pattern of conservation, we detected many non-neutral evolutionary changes in protein-coding genes and noncoding regions. These analyses reveal that pan-avian genomic diversity covaries with adaptations to different lifestyles and convergent evolution of traits

The wide-field, multiplexed, spectroscopic facility WEAVE : survey design, overview, and simulated implementation

Funding for the WEAVE facility has been provided by UKRI STFC, the University of Oxford, NOVA, NWO, Instituto de Astrofísica de Canarias (IAC), the Isaac Newton Group partners (STFC, NWO, and Spain, led by the IAC), INAF, CNRS-INSU, the Observatoire de Paris, Région Île-de-France, CONCYT through INAOE, Konkoly Observatory (CSFK), Max-Planck-Institut für Astronomie (MPIA Heidelberg), Lund University, the Leibniz Institute for Astrophysics Potsdam (AIP), the Swedish Research Council, the European Commission, and the University of Pennsylvania.WEAVE, the new wide-field, massively multiplexed spectroscopic survey facility for the William Herschel Telescope, will see first light in late 2022. WEAVE comprises a new 2-degree field-of-view prime-focus corrector system, a nearly 1000-multiplex fibre positioner, 20 individually deployable 'mini' integral field units (IFUs), and a single large IFU. These fibre systems feed a dual-beam spectrograph covering the wavelength range 366-959 nm at R ∼ 5000, or two shorter ranges at R ∼ 20,000. After summarising the design and implementation of WEAVE and its data systems, we present the organisation, science drivers and design of a five- to seven-year programme of eight individual surveys to: (i) study our Galaxy's origins by completing Gaia's phase-space information, providing metallicities to its limiting magnitude for ∼ 3 million stars and detailed abundances for ∼ 1.5 million brighter field and open-cluster stars; (ii) survey ∼ 0.4 million Galactic-plane OBA stars, young stellar objects and nearby gas to understand the evolution of young stars and their environments; (iii) perform an extensive spectral survey of white dwarfs; (iv) survey  ∼ 400 neutral-hydrogen-selected galaxies with the IFUs; (v) study properties and kinematics of stellar populations and ionised gas in z 1 million spectra of LOFAR-selected radio sources; (viii) trace structures using intergalactic/circumgalactic gas at z > 2. Finally, we describe the WEAVE Operational Rehearsals using the WEAVE Simulator.PostprintPeer reviewe

The wide-field, multiplexed, spectroscopic facility WEAVE: Survey design, overview, and simulated implementation

WEAVE, the new wide-field, massively multiplexed spectroscopic survey facility for the William Herschel Telescope, will see first light in late 2022. WEAVE comprises a new 2-degree field-of-view prime-focus corrector system, a nearly 1000-multiplex fibre positioner, 20 individually deployable 'mini' integral field units (IFUs), and a single large IFU. These fibre systems feed a dual-beam spectrograph covering the wavelength range 366$-$959\,nm at $R\sim5000$, or two shorter ranges at $R\sim20\,000$. After summarising the design and implementation of WEAVE and its data systems, we present the organisation, science drivers and design of a five- to seven-year programme of eight individual surveys to: (i) study our Galaxy's origins by completing Gaia's phase-space information, providing metallicities to its limiting magnitude for $\sim$3 million stars and detailed abundances for $\sim1.5$ million brighter field and open-cluster stars; (ii) survey $\sim0.4$ million Galactic-plane OBA stars, young stellar objects and nearby gas to understand the evolution of young stars and their environments; (iii) perform an extensive spectral survey of white dwarfs; (iv) survey $\sim400$ neutral-hydrogen-selected galaxies with the IFUs; (v) study properties and kinematics of stellar populations and ionised gas in $z<0.5$ cluster galaxies; (vi) survey stellar populations and kinematics in $\sim25\,000$ field galaxies at $0.3\lesssim z \lesssim 0.7$; (vii) study the cosmic evolution of accretion and star formation using $>1$ million spectra of LOFAR-selected radio sources; (viii) trace structures using intergalactic/circumgalactic gas at $z>2$. Finally, we describe the WEAVE Operational Rehearsals using the WEAVE Simulator.Comment: 41 pages, 27 figures, accepted for publication by MNRA

Clonal chromosomal mosaicism and loss of chromosome Y in elderly men increase vulnerability for SARS-CoV-2

The pandemic caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2, COVID-19) had an estimated overall case fatality ratio of 1.38% (pre-vaccination), being 53% higher in males and increasing exponentially with age. Among 9578 individuals diagnosed with COVID-19 in the SCOURGE study, we found 133 cases (1.42%) with detectable clonal mosaicism for chromosome alterations (mCA) and 226 males (5.08%) with acquired loss of chromosome Y (LOY). Individuals with clonal mosaic events (mCA and/or LOY) showed a 54% increase in the risk of COVID-19 lethality. LOY is associated with transcriptomic biomarkers of immune dysfunction, pro-coagulation activity and cardiovascular risk. Interferon-induced genes involved in the initial immune response to SARS-CoV-2 are also down-regulated in LOY. Thus, mCA and LOY underlie at least part of the sex-biased severity and mortality of COVID-19 in aging patients. Given its potential therapeutic and prognostic relevance, evaluation of clonal mosaicism should be implemented as biomarker of COVID-19 severity in elderly people. Among 9578 individuals diagnosed with COVID-19 in the SCOURGE study, individuals with clonal mosaic events (clonal mosaicism for chromosome alterations and/or loss of chromosome Y) showed an increased risk of COVID-19 lethality

The wide-field, multiplexed, spectroscopic facility WEAVE: Survey design, overview, and simulated implementation

WEAVE, the new wide-field, massively multiplexed spectroscopic survey facility for the William Herschel Telescope, will see first light in late 2022. WEAVE comprises a new 2-degree field-of-view prime-focus corrector system, a nearly 1000-multiplex fibre positioner, 20 individually deployable 'mini' integral field units (IFUs), and a single large IFU. These fibre systems feed a dual-beam spectrograph covering the wavelength range 366−959\,nm at R∼5000, or two shorter ranges at R∼20000. After summarising the design and implementation of WEAVE and its data systems, we present the organisation, science drivers and design of a five- to seven-year programme of eight individual surveys to: (i) study our Galaxy's origins by completing Gaia's phase-space information, providing metallicities to its limiting magnitude for ∼3 million stars and detailed abundances for ∼1.5 million brighter field and open-cluster stars; (ii) survey ∼0.4 million Galactic-plane OBA stars, young stellar objects and nearby gas to understand the evolution of young stars and their environments; (iii) perform an extensive spectral survey of white dwarfs; (iv) survey ∼400 neutral-hydrogen-selected galaxies with the IFUs; (v) study properties and kinematics of stellar populations and ionised gas in z1 million spectra of LOFAR-selected radio sources; (viii) trace structures using intergalactic/circumgalactic gas at z>2. Finally, we describe the WEAVE Operational Rehearsals using the WEAVE Simulator

The evolutionary history of cockatoos (Aves: Psittaciformes: Cacatuidae)

Cockatoos are the distinctive family Cacatuidae, a major lineage of the order of parrots (Psittaciformes) and distributed throughout the Australasian region of the world. However, the evolutionary history of cockatoos is not well understood. We investigated the phylogeny of cockatoos based on three mitochondrial and three nuclear DNA genes obtained from 16 of 21 species of Cacatuidae. In addition, five novel mitochondrial genomes were used to estimate time of divergence and our estimates indicate Cacatuidae diverged from Psittacidae approximately 40.7. million years ago (95% CI 51.6-30.3. Ma) during the Eocene. Our data shows Cacatuidae began to diversify approximately 27.9. Ma (95% CI 38.1-18.3. Ma) during the Oligocene. The early to middle Miocene (20-10. Ma) was a significant period in the evolution of modern Australian environments and vegetation, in which a transformation from mainly mesic to xeric habitats (e.g., fire-adapted sclerophyll vegetation and grasslands) occurred. We hypothesize that this environmental transformation was a driving force behind the diversification of cockatoos. A detailed multi-locus molecular phylogeny enabled us to resolve the phylogenetic placements of the Palm Cockatoo (Probosciger aterrimus), Galah (Eolophus roseicapillus), Gang-gang Cockatoo (Callocephalon fimbriatum) and Cockatiel (Nymphicus hollandicus), which have historically been difficult to place within Cacatuidae. When the molecular evidence is analysed in concert with morphology, it is clear that many of the cockatoo species' diagnostic phenotypic traits such as plumage colour, body size, wing shape and bill morphology have evolved in parallel or convergently across lineages