Implementing a Secure Annotation Service

Annotation systems enable "value-adding" to digital resources by the attachment of additional data in the form of comments, explanations, references, reviews, corrections and other types of external, subjective remarks. They facilitate group discourse and capture collective intelligence by enabling communities to attach and share their views on particular data and documents accessible over the Web. Annotation systems vary greatly with regard to the types of content they annotate, the extent of collaboration and sharing they allow and the communities which they serve. However within many applications, there is a need to restrict access to the annotations to a particular group of trusted users - in order to protect intellectual property rights or personal privacy. This paper describes a secure, open source annotation system that we have developed that uses Shibboleth and XACML to identify and authenticate users and restrict their access to annotations stored on an Annotea server

A live dengue virus vaccine carrying a chimeric envelope glycoprotein elicits dual DENV2-DENV4 serotype-specific immunity

The four dengue virus serotypes co-circulate globally and cause significant human disease. Dengue vaccine development is challenging because some virus-specific antibodies are protective, while others are implicated in enhanced viral replication and more severe disease. Current dengue tetravalent vaccines contain four live attenuated serotypes formulated to theoretically induce balanced protective immunity. Among the number of vaccine candidates in clinical trials, only Dengvaxia is licensed for use in DENV seropositive individuals. To simplify live-virus vaccine design, we identify co-evolutionary constraints inherent in flavivirus virion assembly and design chimeric viruses to replace domain II (EDII) of the DENV2 envelope (E) glycoprotein with EDII from DENV4. The chimeric DENV2/4EDII virus replicates efficiently in vitro and in vivo. In male macaques, a single inoculation of DENV2/4EDII induces type-specific neutralizing antibodies to both DENV2 and DENV4, thereby providing a strategy to simplify DENV vaccine design by utilizing a single bivalent E glycoprotein immunogen for two DENV serotypes

Relationship between physical attributes, clay fraction mineralogy and aluminum forms in soil

O alumínio (Al) é um dos elementos mais abundantes em massa nos solos brasileiros, estando presente em diferentes minerais e formas. Considerando a carência de informações sobre a sua participação no comportamento físico do solo, buscou-se, no presente estudo, avaliar a relação entre a mineralogia da fração argila, formas de Al e atributos físicos de diferentes solos. Para tanto, foram coletadas amostras deformadas e indeformadas dos horizontes A e B de solos representativos das Zonas Fisiográficas Sul e Campos das Vertentes do estado de Minas Gerais. As amostras foram submetidas às caracterizações física, química e mineralógica. Estudos de correlação mostraram que os atributos físicos dos solos estudados estavam associados às diferentes formas de Al presentes e à mineralogia da fração argila: as formas de Al amorfas e menos cristalinas associaram-se mais aos atributos físicos relacionados com a agregação das partículas do solo, podendo esta associação ser atribuída à afinidade deste elemento com a matéria orgânica, enquanto os componentes cristalinos associaram-se mais aos atributos físicos relacionados com a organização estrutural dos solos._________________________________________________________________________________ ABSTRACT: Aluminum (Al) is one of the most abundant elements in weight in Brazilian soils, found in different minerals and forms. Considering the lack of information about its participation in the physical behavior of soil, the present study aimed to evaluate the relationship between the mineralogy of the clay fraction, different forms of Al and physical attributes of different soils. Disturbed and undisturbed samples of A and B horizons of representative soils from the South and Campos das Vertentes physiographic regions in the State of Minas Gerais were therefore collected. The samples were subjected to physical, chemical and mineralogical characterizations. Correlation studies performed with the resulting data from the different characterizations showed that the physical attributes of the different studied soils are associated to the different forms of Al and to the mineralogy of the clay fraction: the amorphous and less crystalline forms of Al were more associated to physical attributes related with particle aggregation, such association being ascribed to the affinity of this element with organic matter, while the crystalline components were more associated to physical attributes related with the structural organization of the soils

Measurements of differential production cross sections for a Z boson in association with jets in pp collisions at root s=8 TeV

Peer reviewe

Alignment of the CMS silicon tracker during commissioning with cosmic rays

This is the Pre-print version of the Article. The official published version of the Paper can be accessed from the link below - Copyright @ 2010 IOPThe CMS silicon tracker, consisting of 1440 silicon pixel and 15 148 silicon strip detector modules, has been aligned using more than three million cosmic ray charged particles, with additional information from optical surveys. The positions of the modules were determined with respect to cosmic ray trajectories to an average precision of 3–4 microns RMS in the barrel and 3–14 microns RMS in the endcap in the most sensitive coordinate. The results have been validated by several studies, including laser beam cross-checks, track fit self-consistency, track residuals in overlapping module regions, and track parameter resolution, and are compared with predictions obtained from simulation. Correlated systematic effects have been investigated. The track parameter resolutions obtained with this alignment are close to the design performance.This work is supported by FMSR (Austria); FNRS and FWO (Belgium); CNPq, CAPES, FAPERJ, and FAPESP (Brazil); MES (Bulgaria); CERN; CAS, MoST, and NSFC (China); COLCIENCIAS (Colombia); MSES (Croatia); RPF (Cyprus); Academy of Sciences and NICPB (Estonia); Academy of Finland, ME, and HIP (Finland); CEA and CNRS/IN2P3 (France); BMBF, DFG, and HGF (Germany); GSRT (Greece); OTKA and NKTH (Hungary); DAE and DST (India); IPM (Iran); SFI (Ireland); INFN (Italy); NRF (Korea); LAS (Lithuania); CINVESTAV, CONACYT, SEP, and UASLP-FAI (Mexico); PAEC (Pakistan); SCSR (Poland); FCT (Portugal); JINR (Armenia, Belarus, Georgia, Ukraine, Uzbekistan); MST and MAE (Russia); MSTDS (Serbia); MICINN and CPAN (Spain); Swiss Funding Agencies (Switzerland); NSC (Taipei); TUBITAK and TAEK (Turkey); STFC (United Kingdom); DOE and NSF (USA)

Commissioning and performance of the CMS pixel tracker with cosmic ray muons

This is the Pre-print version of the Article. The official published verion of the Paper can be accessed from the link below - Copyright @ 2010 IOPThe pixel detector of the Compact Muon Solenoid experiment consists of three barrel layers and two disks for each endcap. The detector was installed in summer 2008, commissioned with charge injections, and operated in the 3.8 T magnetic field during cosmic ray data taking. This paper reports on the first running experience and presents results on the pixel tracker performance, which are found to be in line with the design specifications of this detector. The transverse impact parameter resolution measured in a sample of high momentum muons is 18 microns.This work is supported by FMSR (Austria); FNRS and FWO (Belgium); CNPq, CAPES, FAPERJ, and FAPESP (Brazil); MES (Bulgaria); CERN; CAS, MoST, and NSFC (China); COLCIENCIAS (Colombia); MSES (Croatia); RPF (Cyprus); Academy of Sciences and NICPB (Estonia); Academy of Finland, ME, and HIP (Finland); CEA and CNRS/IN2P3 (France); BMBF, DFG, and HGF (Germany); GSRT (Greece); OTKA and NKTH (Hungary); DAE and DST (India); IPM (Iran); SFI (Ireland); INFN (Italy); NRF (Korea); LAS (Lithuania); CINVESTAV, CONACYT, SEP, and UASLP-FAI (Mexico); PAEC (Pakistan); SCSR (Poland); FCT (Portugal); JINR (Armenia, Belarus, Georgia, Ukraine, Uzbekistan); MST and MAE (Russia); MSTDS (Serbia); MICINN and CPAN (Spain); Swiss Funding Agencies (Switzerland); NSC (Taipei); TUBITAK and TAEK (Turkey); STFC (United Kingdom); DOE and NSF (USA)

Performance of the CMS drift-tube chamber local trigger with cosmic rays

The performance of the Local Trigger based on the drift-tube system of the CMS experiment has been studied using muons from cosmic ray events collected during the commissioning of the detector in 2008. The properties of the system are extensively tested and compared with the simulation. The effect of the random arrival time of the cosmic rays on the trigger performance is reported, and the results are compared with the design expectations for proton-proton collisions and with previous measurements obtained with muon beams