Prokaryotic responses to a warm temperature anomaly in northeast subarctic Pacific waters

Recent studies on marine heat waves describe water temperature anomalies causing changes in food web structure, bloom dynamics, biodiversity loss, and increased plant and animal mortality. However, little information is available on how water temperature anomalies impact prokaryotes (bacteria and archaea) inhabiting ocean waters. This is a nontrivial omission given their integral roles in driving major biogeochemical fluxes that influence ocean productivity and the climate system. Here we present a time-resolved study on the impact of a large-scale warm water surface anomaly in the northeast subarctic Pacific Ocean, colloquially known as the Blob, on prokaryotic community compositions. Multivariate statistical analyses identified significant depth- and season-dependent trends that were accentuated during the Blob. Moreover, network and indicator analyses identified shifts in specific prokaryotic assemblages from typically particle-associated before the Blob to taxa considered free-living and chemoautotrophic during the Blob, with potential implications for primary production and organic carbon conversion and export. Traving et al. use small subunit ribosomal RNA gene sequencing to examine spatial and temporal trends in bacterial and archaeal community structure during a large marine warm water surface anomaly, the Blob. Their findings suggest that community structure shifted during the Blob, with taxa considered free-living and chemoautotrophic prevailing under these unusual conditions

ASAP: Algorithm Substitution Attacks on Cryptographic Protocols

The security of digital communication relies on few cryptographic protocols that are used to protect internet traffic, from web sessions to instant messaging. These protocols and the cryptographic primitives they rely on have been extensively studied and are considered secure. Yet, sophisticated attackers are often able to bypass rather than break security mechanisms. Kleptography or algorithm substitution attacks (ASA) describe techniques to place backdoors right into cryptographic primitives. While highly relevant as a building block, we show that the real danger of ASAs is their use in cryptographic protocols. In fact, we show that highly desirable security properties of these protocols - forward secrecy and post-compromise security - imply the applicability of ASAs. We then analyze the application of ASAs in three widely used protocols: TLS, WireGuard, and Signal. We show that these protocols can be easily subverted by carefully placing ASAs. Our analysis shows that careful design of ASAs makes detection unlikely while leaking long-term secrets within a few messages in the case of TLS and WireGuard, allowing impersonation attacks. In contrast,Signal\u27s double-ratchet protocol shows higher immunity to ASAs, as the leakage requires much more messages

<研究>貨幣現象的景氣循環理論に對するピグウの論争とその批判

An initial modeling approach was applied to analyze how a single, nonmotile, free-living, heterotrophic bacterial cell may optimize the deployment of its extracellular enzymes. Free-living cells live in a dilute and complex substrate field, and to gain enough substrate, their extracellular enzymes must be utilized efficiently. The model revealed that surface-attached and free enzymes generate unique enzyme and substrate fields, and each deployment strategy has distinctive advantages. For a solitary cell, surface-attached enzymes are suggested to be the most cost-efficient strategy. This strategy entails potential substrates being reduced to very low concentrations. Free enzymes, on the other hand, generate a radically different substrate field, which suggests significant benefits for the strategy if free cells engage in social foraging or experience high substrate concentrations. Swimming has a slight positive effect for the attached-enzyme strategy, while the effect is negative for the free-enzyme strategy. The results of this study suggest that specific dissolved organic compounds in the ocean likely persist below a threshold concentration impervious to biological utilization. This could help explain the persistence and apparent refractory state of oceanic dissolved organic matter (DOM). Microbial extracellular enzyme strategies, therefore, have important implications for larger-scale processes, such as shaping the role of DOM in ocean carbon sequestration

Atmospheres from very low-mass stars to extrasolar planets

Within the next few years, several instruments aiming at imaging extrasolar planets will see first light. In parallel, low mass planets are being searched around red dwarfs which offer more favorable conditions, both for radial velocity detection and transit studies, than solar-type stars. We review recent advancements in modeling the stellar to substellar transition. The revised solar oxygen abundances and cloud models allow to reproduce the photometric and spectroscopic properties of this transition to a degree never achieved before, but problems remain in the important M-L transition characteristic of the effective temperature range of characterizable exoplanets.Comment: submitted to Memorie della Societa Astronomica Italian

Coupling bacterioplankton populations and environment to community function in coastal temperate waters

Bacterioplankton play a key role in marine waters facilitating processes important for carbon cycling. However, the influence of specific bacterial populations and environmental conditions on bacterioplankton community performance remains unclear. The aim of the present study was to identify drivers of bacterioplankton community functions, taking into account the variability in community composition and environmental conditions over seasons, in two contrasting coastal systems. A Least Absolute Shrinkage and Selection Operator (LASSO) analysis of the biological and chemical data obtained from surface waters over a full year indicated that specific bacterial populations were linked to measured functions. Namely, Synechococcus (Cyanobacteria) was strongly correlated with protease activity. Furthermore, seasons exerted a profound effect on the substrate utilization capacity and composition of the communities. However, the pattern of substrate utilization capacity could not be directly linked to the community dynamics. The overall importance of dissolved organic matter (DOM) parameters in the LASSO models indicate that bacterioplankton respond to the present substrate landscape, with a particular importance of nitrogenous DOM. The analyses exemplifies that high taxonomic resolution can reveal links between individual populations and bulk bacterioplankton functions, and that for some taxa rRNA analyses are a necessary descriptor when attempting to correlate functions with communities. The reconciliation of patterns from two different systems indicates that the identified drivers of bacterioplankton community functions may be of broader relevance in coastal temperate waters

NLTE model calculations for the solar atmosphere with an iterative treatment of opacity distribution functions

Modeling the variability of the solar spectral irradiance is a key factor for understanding the solar influence on the climate of the Earth. As a first step to calculating the solar spectral irradiance variations we reproduce the solar spectrum for the quiet Sun over a broad wavelength range with an emphasis on the UV. We introduce the radiative transfer code COSI which calculates solar synthetic spectra under conditions of non-local thermodynamic equilibrium (NLTE). A self-consistent simultaneous solution of the radiative transfer and the statistical equation for the level populations guarantees that the correct physics is considered for wavelength regions where the assumption of local thermodynamic equilibrium (LTE) breaks down. The new concept of iterated opacity distribution functions (NLTE-ODFs), through which all line opacities are included in the NLTE radiative transfer calculation, is presented. We show that it is essential to include the line opacities in the radiative transfer to reproduce the solar spectrum in the UV. Through the implemented scheme of NLTE-ODFs the COSI code is successful in reproducing the spectral energy distribution of the quiet Sun.Comment: 13 pages, 9 figures. accepted for publication in Astronomy and Astrophysic

On Single-Cell Enzyme Assays in Marine Microbial Ecology and Biogeochemistry

Extracellular enzyme activity is a well-established parameter for evaluating microbial biogeochemical roles in marine ecosystems. The presence and activity of extracellular enzymes in seawater provide insights into the quality and quantity of organic matter being processed by the present microorganisms. A key challenge in our understanding of these processes is to decode the extracellular enzyme repertoire and activities of natural communities at the single-cell level. Current measurements are carried out on bulk or size-fractionated samples capturing activities of mixed populations. This approach – even with size-fractionation – cannot be used to trace enzymes back to their producers, nor distinguish the active microbial members, leading to a disconnect between measured activities and the producer cells. By targeting extracellular enzymes and resolving their activities at the single-cell level, we can investigate underlying phenotypic heterogeneity among clonal or closely related organisms, characterize enzyme kinetics under varying environmental conditions, and resolve spatio-temporal distribution of individual enzyme producers within natural communities. In this perspective piece, we discuss state-of-the-art technologies in the fields of microfluidic droplets and functional screening of prokaryotic cells for measuring enzyme activity in marine seawater samples, one cell at a time. We further elaborate on how this single-cell approach can be used to address research questions that cannot be answered with current methods, as pertinent to the enzymatic degradation of organic matter by marine microorganisms

Eukaryotic and cyanobacterial communities associated with marine snow particles in the oligotrophic Sargasso Sea

Marine snow aggregates represent heterogeneous agglomerates of dead and living organic matter. Composition is decisive for their sinking rates, and thereby for carbon flux to the deep sea. For oligotrophic oceans, information on aggregate composition is particularly sparse. To address this, the taxonomic composition of aggregates collected from the subtropical and oligotrophic Sargasso Sea (Atlantic Ocean) was characterized by 16S and 18S rRNA gene sequencing. Taxonomy assignment was aided by a collection of the contemporary plankton community consisting of 75 morphologically and genetically identified plankton specimens. The diverse rRNA gene reads of marine snow aggregates, not considering Trichodesmium puffs, were dominated by copepods (52%), cnidarians (21%), radiolarians (11%), and alveolates (8%), with sporadic contributions by cyanobacteria, suggesting a different aggregate composition than in eutrophic regions. Composition linked significantly with sampling location but not to any measured environmental parameters or plankton biomass composition. Nevertheless, indicator and network analyses identified key roles of a few rare taxa. This points to complex regulation of aggregate composition, conceivably affected by the environment and plankton characteristics. The extent to which this has implications for particle densities, and consequently for sinking rates and carbon sequestration in oligotrophic waters, needs further interrogation