Insights from Super-Metal-Rich Stars: Is the Milky Way bar young?

Super-metal-rich (SMR) stars, currently in the solar neighbourhood, are expected to originate only in the inner Galaxy and have definitely migrated. We aim at studying a large sample of SMR stars to provide constraints on the epoch of the bar formation and its impact on the MW disc stellar populations. We investigate a sample of 169,701 MSTO and SGB stars with 6D phase space information and high-quality stellar parameters coming from the hybrid-CNN analysis of the Gaia-DR3 RVS stars. We compute distances and ages using the StarHorse code with a mean precision of 1% and 11%, respectively. From these, 11,848 stars have metallicity ([Fe/H]) above 0.15 dex. We report a metallicity dependence of spatial distribution of stellar orbits shown by the bimodal distribution in the guiding radius at 6.9 and 7.9 kpc, first appearing at [Fe/H]~0.1 dex, becoming very pronounced at larger [Fe/H]. In addition, we've observed a trend where the most metal-rich stars, with [Fe/H]~0.4 dex, are predominantly old (9-12 Gyrs) but show a gradual decline in [Fe/H] with age, reaching around 0.25 dex at about 4 Gyrs ago, followed by a sharp drop around 3 Gyrs ago. Furthermore, our full dataset reveals a clear peak in the age-metallicity relationship during the same period, indicating a SF burst around 3-4 Gyrs ago with slightly sub-solar [Fe/H] and enhanced [$\alpha$/Fe]. We show the SMR stars are good tracers of the bar activity. We interpret the steep decrease in number of SMR stars at around 3 Gyr as the end of the bar formation epoch. In this scenario, the peak of bar activity also coincides with a peak in the SF activity in the disc. Although the SF burst around 3 Gyr ago has been reported previously, its origin was unclear. Here, we suggest the SF burst to have been triggered by the high bar activity, 3-4 Gyr ago. According to these results and interpretation, the MW bar could be young.Comment: Accepted for publication on A&A Letter

StarHorse: A Bayesian tool for determining stellar masses, ages, distances, and extinctions for field stars

Understanding the formation and evolution of our Galaxy requires accurate distances, ages and chemistry for large populations of field stars. Here we present several updates to our spectro-photometric distance code, that can now also be used to estimate ages, masses, and extinctions for individual stars. Given a set of measured spectro-photometric parameters, we calculate the posterior probability distribution over a given grid of stellar evolutionary models, using flexible Galactic stellar-population priors. The code (called {\tt StarHorse}) can acommodate different observational datasets, prior options, partially missing data, and the inclusion of parallax information into the estimated probabilities. We validate the code using a variety of simulated stars as well as real stars with parameters determined from asteroseismology, eclipsing binaries, and isochrone fits to star clusters. Our main goal in this validation process is to test the applicability of the code to field stars with known {\it Gaia}-like parallaxes. The typical internal precision (obtained from realistic simulations of an APOGEE+Gaia-like sample) are $\simeq 8\%$ in distance, $\simeq 20\%$ in age,$\simeq 6\$ in mass, and $\simeq 0.04$ mag in $A_V$. The median external precision (derived from comparisons with earlier work for real stars) varies with the sample used, but lies in the range of $\simeq [0,2]\%$ for distances, $\simeq [12,31]\%$ for ages, $\simeq [4,12]\%$ for masses, and $\simeq 0.07$ mag for $A_V$. We provide StarHorse distances and extinctions for the APOGEE DR14, RAVE DR5, GES DR3 and GALAH DR1 catalogues.Comment: 21 pages, 12 figures, accepte

Galactic ArchaeoLogIcaL ExcavatiOns (GALILEO) II. t-SNE Portrait of Local Fossil Relics and Structures

Based on high-quality APOGEE DR17 and Gaia DR3 data for 1,742 red giants stars within 5 kpc of the Sun and not rotating with the Galactic disc ($V_\phi <$ 100 km s$^{-1}$), we use the nonlinear technique of unsupervised analysis t-SNE to detect coherent structures in the space of ten chemical-abundance ratios: [Fe/H], [O/Fe], [Mg/Fe], [Si/Fe], [Ca/Fe], [C/Fe], [N/Fe], [Al/Fe], [Mn/Fe], and [Ni/Fe]. Additionally, we obtain orbital parameters for each star using the non-axisymmetric gravitational potential {\tt GravPot16}. Seven structures are detected, including the Splash, Gaia-Sausage-Enceladus (GSE), the high-$\alpha$ heated-disc population, N-C-O peculiar stars, and inner disk-like stars, plus two other groups that did not match anything previously reported in the literature, here named Galileo 5 and Galileo 6 (G5 and G6). These two groups overlap with Splash in [Fe/H], G5 being lower metallicity than G6, both between GSE and Splash in the [Mg/Mn] versus [Al/Fe] plane, G5 in the $\alpha$-rich in-situ locus, and G6 on the border of the $\alpha$-poor in-situ one; nonetheless their low [Ni/Fe] hints to a possible ex-situ origin. Their orbital energy distributions are between the Splash and GSE, with G5 being slightly more energetic than G6. We verified the robustness of all the obtained groups by exploring a large range of t-SNE parameters, applying it to various subsets of data, and also measuring the effect of abundance errors through Monte Carlo tests.Comment: Accepted by A&A. 19 pages, 15 figures, and 3 table

StarHorse results for spectroscopic surveys + Gaia DR3: Chrono-chemical populations in the solar vicinity, the genuine thick disk, and young-alpha rich stars

The Gaia mission has provided an invaluable wealth of astrometric data for more than a billion stars in our Galaxy. The synergy between Gaia astrometry, photometry, and spectroscopic surveys give us comprehensive information about the Milky Way. Using the Bayesian isochrone-fitting code StarHorse, we derive distances and extinctions for more than 10 million unique stars observed by both Gaia Data Release 3 as well as public spectroscopic surveys: GALAH DR3, LAMOST DR7 LRS, LAMOST DR7 MRS, APOGEE DR17, RAVE DR6, SDSS DR12 (optical spectra from BOSS and SEGUE), Gaia-ESO DR5 survey, and Gaia RVS part of Gaia DR3 release. We use StarHorse for the first time to derive stellar age for main-sequence turnoff and subgiant branch stars (MSTO-SGB), around 2.5 million stars with age uncertainties typically around 30%, 15% for only SGB stars, depending on the resolution of the survey. With the derived ages in hand, we investigate the chemical-age relations. In particular, the $\alpha$ and neutron-capture element ratios versus age in the solar neighbourhood show trends similar to previous works, validating our ages. We use the chemical abundances from local subgiant samples of GALAH DR3, APOGEE DR17 and LAMOST MRS DR7 to map groups with similar chemical compositions and StarHorse ages with the dimensionality reduction technique t-SNE and the clustering algorithm HDBSCAN. We identify three distinct groups in all three samples. Their kinematic properties confirm them to be the genuine chemical thick disk, the thin disk and a considerable number of young alpha-rich stars. We confirm that the genuine thick disk's kinematics and age properties are radically different from those of the thin disk and compatible with high-redshift (z$\approx$2) star-forming disks with high dispersion velocities.Comment: 27 pages, 19 figures. Accepted for publication in Astronomy & Astrophysics. Catalogues can be downloaded at https://data.aip.de

The Fourteenth Data Release of the Sloan Digital Sky Survey: First Spectroscopic Data from the extended Baryon Oscillation Spectroscopic Survey and from the second phase of the Apache Point Observatory Galactic Evolution Experiment

The fourth generation of the Sloan Digital Sky Survey (SDSS-IV) has been in operation since July 2014. This paper describes the second data release from this phase, and the fourteenth from SDSS overall (making this, Data Release Fourteen or DR14). This release makes public data taken by SDSS-IV in its first two years of operation (July 2014-2016). Like all previous SDSS releases, DR14 is cumulative, including the most recent reductions and calibrations of all data taken by SDSS since the first phase began operations in 2000. New in DR14 is the first public release of data from the extended Baryon Oscillation Spectroscopic Survey (eBOSS); the first data from the second phase of the Apache Point Observatory (APO) Galactic Evolution Experiment (APOGEE-2), including stellar parameter estimates from an innovative data driven machine learning algorithm known as "The Cannon"; and almost twice as many data cubes from the Mapping Nearby Galaxies at APO (MaNGA) survey as were in the previous release (N = 2812 in total). This paper describes the location and format of the publicly available data from SDSS-IV surveys. We provide references to the important technical papers describing how these data have been taken (both targeting and observation details) and processed for scientific use. The SDSS website (www.sdss.org) has been updated for this release, and provides links to data downloads, as well as tutorials and examples of data use. SDSS-IV is planning to continue to collect astronomical data until 2020, and will be followed by SDSS-V.Comment: SDSS-IV collaboration alphabetical author data release paper. DR14 happened on 31st July 2017. 19 pages, 5 figures. Accepted by ApJS on 28th Nov 2017 (this is the "post-print" and "post-proofs" version; minor corrections only from v1, and most of errors found in proofs corrected

Global Spatial Risk Assessment of Sharks Under the Footprint of Fisheries

Effective ocean management and conservation of highly migratory species depends on resolving overlap between animal movements and distributions and fishing effort. Yet, this information is lacking at a global scale. Here we show, using a big-data approach combining satellite-tracked movements of pelagic sharks and global fishing fleets, that 24% of the mean monthly space used by sharks falls under the footprint of pelagic longline fisheries. Space use hotspots of commercially valuable sharks and of internationally protected species had the highest overlap with longlines (up to 76% and 64%, respectively) and were also associated with significant increases in fishing effort. We conclude that pelagic sharks have limited spatial refuge from current levels of high-seas fishing effort. Results demonstrate an urgent need for conservation and management measures at high-seas shark hotspots and highlight the potential of simultaneous satellite surveillance of megafauna and fishers as a tool for near-real time, dynamic management

Common, low-frequency, rare, and ultra-rare coding variants contribute to COVID-19 severity

The combined impact of common and rare exonic variants in COVID-19 host genetics is currently insufficiently understood. Here, common and rare variants from whole-exome sequencing data of about 4000 SARS-CoV-2-positive individuals were used to define an interpretable machine-learning model for predicting COVID-19 severity. First, variants were converted into separate sets of Boolean features, depending on the absence or the presence of variants in each gene. An ensemble of LASSO logistic regression models was used to identify the most informative Boolean features with respect to the genetic bases of severity. The Boolean features selected by these logistic models were combined into an Integrated PolyGenic Score that offers a synthetic and interpretable index for describing the contribution of host genetics in COVID-19 severity, as demonstrated through testing in several independent cohorts. Selected features belong to ultra-rare, rare, low-frequency, and common variants, including those in linkage disequilibrium with known GWAS loci. Noteworthily, around one quarter of the selected genes are sex-specific. Pathway analysis of the selected genes associated with COVID-19 severity reflected the multi-organ nature of the disease. The proposed model might provide useful information for developing diagnostics and therapeutics, while also being able to guide bedside disease management. © 2021, The Author(s)

Genetic mechanisms of critical illness in COVID-19.

Host-mediated lung inflammation is present1, and drives mortality2, in the critical illness caused by coronavirus disease 2019 (COVID-19). Host genetic variants associated with critical illness may identify mechanistic targets for therapeutic development3. Here we report the results of the GenOMICC (Genetics Of Mortality In Critical Care) genome-wide association study in 2,244 critically ill patients with COVID-19 from 208 UK intensive care units. We have identified and replicated the following new genome-wide significant associations: on chromosome 12q24.13 (rs10735079, P = 1.65 × 10-8) in a gene cluster that encodes antiviral restriction enzyme activators (OAS1, OAS2 and OAS3); on chromosome 19p13.2 (rs74956615, P = 2.3 × 10-8) near the gene that encodes tyrosine kinase 2 (TYK2); on chromosome 19p13.3 (rs2109069, P = 3.98 ×  10-12) within the gene that encodes dipeptidyl peptidase 9 (DPP9); and on chromosome 21q22.1 (rs2236757, P = 4.99 × 10-8) in the interferon receptor gene IFNAR2. We identified potential targets for repurposing of licensed medications: using Mendelian randomization, we found evidence that low expression of IFNAR2, or high expression of TYK2, are associated with life-threatening disease; and transcriptome-wide association in lung tissue revealed that high expression of the monocyte-macrophage chemotactic receptor CCR2 is associated with severe COVID-19. Our results identify robust genetic signals relating to key host antiviral defence mechanisms and mediators of inflammatory organ damage in COVID-19. Both mechanisms may be amenable to targeted treatment with existing drugs. However, large-scale randomized clinical trials will be essential before any change to clinical practice

Expert range maps of global mammal distributions harmonised to three taxonomic authorities

AimComprehensive, global information on species' occurrences is an essential biodiversity variable and central to a range of applications in ecology, evolution, biogeography and conservation. Expert range maps often represent a species' only available distributional information and play an increasing role in conservation assessments and macroecology. We provide global range maps for the native ranges of all extant mammal species harmonised to the taxonomy of the Mammal Diversity Database (MDD) mobilised from two sources, the Handbook of the Mammals of the World (HMW) and the Illustrated Checklist of the Mammals of the World (CMW).LocationGlobal.TaxonAll extant mammal species.MethodsRange maps were digitally interpreted, georeferenced, error-checked and subsequently taxonomically aligned between the HMW (6253 species), the CMW (6431 species) and the MDD taxonomies (6362 species).ResultsRange maps can be evaluated and visualised in an online map browser at Map of Life (mol.org) and accessed for individual or batch download for non-commercial use.Main conclusionExpert maps of species' global distributions are limited in their spatial detail and temporal specificity, but form a useful basis for broad-scale characterizations and model-based integration with other data. We provide georeferenced range maps for the native ranges of all extant mammal species as shapefiles, with species-level metadata and source information packaged together in geodatabase format. Across the three taxonomic sources our maps entail, there are 1784 taxonomic name differences compared to the maps currently available on the IUCN Red List website. The expert maps provided here are harmonised to the MDD taxonomic authority and linked to a community of online tools that will enable transparent future updates and version control

Sloan Digital Sky Survey IV: Mapping the Milky Way, Nearby Galaxies, and the Distant Universe

We describe the Sloan Digital Sky Survey IV (SDSS-IV), a project encompassing three major spectroscopic programs. The Apache Point Observatory Galactic Evolution Experiment 2 (APOGEE-2) is observing hundreds of thousands of Milky Way stars at high resolution and high signal-to-noise ratios in the near-infrared. The Mapping Nearby Galaxies at Apache Point Observatory (MaNGA) survey is obtaining spatially resolved spectroscopy for thousands of nearby galaxies (median $z\sim 0.03$). The extended Baryon Oscillation Spectroscopic Survey (eBOSS) is mapping the galaxy, quasar, and neutral gas distributions between $z\sim 0.6$ and 3.5 to constrain cosmology using baryon acoustic oscillations, redshift space distortions, and the shape of the power spectrum. Within eBOSS, we are conducting two major subprograms: the SPectroscopic IDentification of eROSITA Sources (SPIDERS), investigating X-ray AGNs and galaxies in X-ray clusters, and the Time Domain Spectroscopic Survey (TDSS), obtaining spectra of variable sources. All programs use the 2.5 m Sloan Foundation Telescope at the Apache Point Observatory; observations there began in Summer 2014. APOGEE-2 also operates a second near-infrared spectrograph at the 2.5 m du Pont Telescope at Las Campanas Observatory, with observations beginning in early 2017. Observations at both facilities are scheduled to continue through 2020. In keeping with previous SDSS policy, SDSS-IV provides regularly scheduled public data releases; the first one, Data Release 13, was made available in 2016 July