Target-site mutations (AChE and kdr), and PSMO activity in codling moth (Cydia pomonella (L.) (Lepidoptera: Tortricidae)) populations from Spain

Codling moth, Cydia pomonella (L.) is a key pest of global importance that affects apple fruit production and whose populations have developed resistance to insecticides in many apple production areas. In Spain, enhanced cytochrome P450 polysubstrate monooxygenase (PSMO) activity is the main mechanism involved in insecticide detoxification by codling moth, although acetylcholinesterase (AChE) target site mutations have been described in two populations. However, the extent of AChE and knockdown resistance (kdr) mutations in Spain is unknown. To assess the actual occurrence of AChE and kdr mutations concurrently with the frequency of moths with PSMO enhanced activity (R-PSMO), 32 Spanish field populations from four apple-growing areas of Spain and two susceptible laboratory strains were evaluated. R-PSMO was significantly higher in 23 chemically treated field populations from Extremadura, Catalonia and Aragon, with proportions that varied between 25% and 90%, but no significant differences among strains and the non-chemically treated orchards (organic or abandoned) were observed. The AChE mutation (F290V) was detected in all field populations from Catalonia (n=21) and in three field populations from Aragon (n=5), with resistant phenotype proportions varying from 34.2% to 97.5% and from 7.2% to 65% in Catalonia and Aragon, respectively. In addition, the kdr mutation (L1014F) was detected in twelve Catalonian field populations, at rates of incidence ranging between 2.6% and 56.8%. A positive correlation between R-PSMO and AChE mutation was found. The origin of the mutations and their ability to persist and spread in field populations with different management systems is discussed.The authors thank the fruit growers and pest control advisors of the different Spanish apple-growing areas for their help in accessing and identifying apple orchards and Mónica Pérez for her technical help. This work was funded by grant Fondo de Desarrollo Científico y Tecnológico, FONDECYT 11130599 (CONICYT), Chile, to M.A. Rodríguez, by grant AGL2013-49164 of the Spanish Ministry for Science and Innovation, to J. Avilla and D. Bosch, and by the CERCA Programme/Generalitat de Catalunya

Genetic signals of artificial and natural dispersal linked to colonization of South America by non-native Chinook salmon (Oncorhynchus tshawytscha)

Genetics data have provided unprecedented insights into evolutionary aspects of colonization by non-native populations. Yet, our understanding of how artificial (human-mediated) and natural dispersal pathways of non-native individuals influence genetic metrics, evolution of genetic structure, and admixture remains elusive. We capitalize on the widespread colonization of Chinook salmon Oncorhynchus tshawytscha in South America, mediated by both dispersal pathways, to address these issues using data from a panel of polymorphic SNPs. First, genetic diversity and the number of effective breeders (Nb) were higher among artificial than natural populations. Contemporary gene flow was common between adjacent artificial and natural and adjacent natural populations, but uncommon between geographically distant populations. Second, genetic structure revealed four distinct clusters throughout the Chinook salmon distributional range with varying levels of genetic connectivity. Isolation by distance resulted from weak differentiation between adjacent artificial and natural and between natural populations, with strong differentiation between distant Pacific Ocean and Atlantic Ocean populations, which experienced strong genetic drift. Third, genetic mixture analyses revealed the presence of at least six donor geographic regions from North America, some of which likely hybridized as a result of multiple introductions. Relative propagule pressure or the proportion of Chinook salmon propagules introduced from various geographic regions according to government records significantly influenced genetic mixtures for two of three artificial populations. Our findings support a model of colonization in which high-diversity artificial populations established first; some of these populations exhibited significant admixture resulting from propagule pressure. Low-diversity natural populations were likely subsequently founded from a reduced number of individuals.Fil: Gomez Uchida, Daniel. Núcleo Milenio Invasal; Chile. Universidad de Concepción; ChileFil: Cañas Rojas, Diego. Núcleo Milenio Invasal; Chile. Universidad de Concepción; ChileFil: Riva Rossi, Carla Marcela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto de Diversidad y Evolución Austral; ArgentinaFil: Ciancio Blanc, Javier Ernesto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Centro para el Estudio de Sistemas Marinos; ArgentinaFil: Pascual, Miguel Alberto. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Centro Nacional Patagónico. Instituto Patagónico para el Estudio de los Ecosistemas Continentales; ArgentinaFil: Ernst, Billy. Universidad de Concepción; Chile. Núcleo Milenio Invasal; ChileFil: Aedo, Eduardo. Universidad Austral de Chile; ChileFil: Musleh, Selim S.. Universidad de Concepción; Chile. Núcleo Milenio Invasal; ChileFil: Valenzuela Aguayo, Francisca. Universidad de Concepción; ChileFil: Quinn, Thomas P.. Núcleo Milenio Invasal; Chile. University of Washington; Estados UnidosFil: Seeb, James E.. Núcleo Milenio Invasal; Chile. University of Washington; Estados UnidosFil: Seeb, Lisa W.. Núcleo Milenio Invasal; Chile. University of Washington; Estados Unido

Temporal Genetic Variance and Propagule-Driven Genetic Structure Characterize Naturalized Rainbow Trout (Oncorhynchus mykiss) from a Patagonian Lake Impacted by Trout Farming

Knowledge about the genetic underpinnings of invasions—a theme addressed by invasion genetics as a discipline—is still scarce amid well documented ecological impacts of non-native species on ecosystems of Patagonia in South America. One of the most invasive species in Patagonia’s freshwater systems and elsewhere is rainbow trout (Oncorhynchus mykiss). This species was introduced to Chile during the early twentieth century for stocking and promoting recreational fishing; during the late twentieth century was reintroduced for farming purposes and is now naturalized. We used population- and individual-based inference from single nucleotide polymorphisms (SNPs) to illuminate three objectives related to the establishment and naturalization of Rainbow Trout in Lake Llanquihue. This lake has been intensively used for trout farming during the last three decades. Our results emanate from samples collected from five inlet streams over two seasons, winter and spring. First, we found that significant intra- population (temporal) genetic variance was greater than inter-population (spatial) genetic variance, downplaying the importance of spatial divergence during the process of naturalization. Allele frequency differences between cohorts, consistent with variation in fish length between spring and winter collections, might explain temporal genetic differences. Second, individual-based Bayesian clustering suggested that genetic structure within Lake Llanquihue was largely driven by putative farm propagules found at one single stream during spring, but not in winter. This suggests that farm broodstock might migrate upstream to breed during spring at that particular stream. It is unclear whether interbreeding has occurred between “pure” naturalized and farm trout in this and other streams. Third, estimates of the annual number of breeders (N[subscript]b) were below 73 in half of the collections, suggestive of genetically small and recently founded populations that might experience substantial genetic drift. Our results reinforce the notion that naturalized trout originated recently from a small yet genetically diverse source and that farm propagules might have played a significant role in the invasion of Rainbow Trout within a single lake with intensive trout farming. Our results also argue for proficient mitigation measures that include management of escapes and strategies to minimize unintentional releases from farm facilities

Antimicrobial resistance among migrants in Europe: a systematic review and meta-analysis

BACKGROUND: Rates of antimicrobial resistance (AMR) are rising globally and there is concern that increased migration is contributing to the burden of antibiotic resistance in Europe. However, the effect of migration on the burden of AMR in Europe has not yet been comprehensively examined. Therefore, we did a systematic review and meta-analysis to identify and synthesise data for AMR carriage or infection in migrants to Europe to examine differences in patterns of AMR across migrant groups and in different settings. METHODS: For this systematic review and meta-analysis, we searched MEDLINE, Embase, PubMed, and Scopus with no language restrictions from Jan 1, 2000, to Jan 18, 2017, for primary data from observational studies reporting antibacterial resistance in common bacterial pathogens among migrants to 21 European Union-15 and European Economic Area countries. To be eligible for inclusion, studies had to report data on carriage or infection with laboratory-confirmed antibiotic-resistant organisms in migrant populations. We extracted data from eligible studies and assessed quality using piloted, standardised forms. We did not examine drug resistance in tuberculosis and excluded articles solely reporting on this parameter. We also excluded articles in which migrant status was determined by ethnicity, country of birth of participants' parents, or was not defined, and articles in which data were not disaggregated by migrant status. Outcomes were carriage of or infection with antibiotic-resistant organisms. We used random-effects models to calculate the pooled prevalence of each outcome. The study protocol is registered with PROSPERO, number CRD42016043681. FINDINGS: We identified 2274 articles, of which 23 observational studies reporting on antibiotic resistance in 2319 migrants were included. The pooled prevalence of any AMR carriage or AMR infection in migrants was 25·4% (95% CI 19·1-31·8; I2 =98%), including meticillin-resistant Staphylococcus aureus (7·8%, 4·8-10·7; I2 =92%) and antibiotic-resistant Gram-negative bacteria (27·2%, 17·6-36·8; I2 =94%). The pooled prevalence of any AMR carriage or infection was higher in refugees and asylum seekers (33·0%, 18·3-47·6; I2 =98%) than in other migrant groups (6·6%, 1·8-11·3; I2 =92%). The pooled prevalence of antibiotic-resistant organisms was slightly higher in high-migrant community settings (33·1%, 11·1-55·1; I2 =96%) than in migrants in hospitals (24·3%, 16·1-32·6; I2 =98%). We did not find evidence of high rates of transmission of AMR from migrant to host populations. INTERPRETATION: Migrants are exposed to conditions favouring the emergence of drug resistance during transit and in host countries in Europe. Increased antibiotic resistance among refugees and asylum seekers and in high-migrant community settings (such as refugee camps and detention facilities) highlights the need for improved living conditions, access to health care, and initiatives to facilitate detection of and appropriate high-quality treatment for antibiotic-resistant infections during transit and in host countries. Protocols for the prevention and control of infection and for antibiotic surveillance need to be integrated in all aspects of health care, which should be accessible for all migrant groups, and should target determinants of AMR before, during, and after migration. FUNDING: UK National Institute for Health Research Imperial Biomedical Research Centre, Imperial College Healthcare Charity, the Wellcome Trust, and UK National Institute for Health Research Health Protection Research Unit in Healthcare-associated Infections and Antimictobial Resistance at Imperial College London

Surgical site infection after gastrointestinal surgery in high-income, middle-income, and low-income countries: a prospective, international, multicentre cohort study

Background: Surgical site infection (SSI) is one of the most common infections associated with health care, but its importance as a global health priority is not fully understood. We quantified the burden of SSI after gastrointestinal surgery in countries in all parts of the world. Methods: This international, prospective, multicentre cohort study included consecutive patients undergoing elective or emergency gastrointestinal resection within 2-week time periods at any health-care facility in any country. Countries with participating centres were stratified into high-income, middle-income, and low-income groups according to the UN's Human Development Index (HDI). Data variables from the GlobalSurg 1 study and other studies that have been found to affect the likelihood of SSI were entered into risk adjustment models. The primary outcome measure was the 30-day SSI incidence (defined by US Centers for Disease Control and Prevention criteria for superficial and deep incisional SSI). Relationships with explanatory variables were examined using Bayesian multilevel logistic regression models. This trial is registered with ClinicalTrials.gov, number NCT02662231. Findings: Between Jan 4, 2016, and July 31, 2016, 13 265 records were submitted for analysis. 12 539 patients from 343 hospitals in 66 countries were included. 7339 (58·5%) patient were from high-HDI countries (193 hospitals in 30 countries), 3918 (31·2%) patients were from middle-HDI countries (82 hospitals in 18 countries), and 1282 (10·2%) patients were from low-HDI countries (68 hospitals in 18 countries). In total, 1538 (12·3%) patients had SSI within 30 days of surgery. The incidence of SSI varied between countries with high (691 [9·4%] of 7339 patients), middle (549 [14·0%] of 3918 patients), and low (298 [23·2%] of 1282) HDI (p < 0·001). The highest SSI incidence in each HDI group was after dirty surgery (102 [17·8%] of 574 patients in high-HDI countries; 74 [31·4%] of 236 patients in middle-HDI countries; 72 [39·8%] of 181 patients in low-HDI countries). Following risk factor adjustment, patients in low-HDI countries were at greatest risk of SSI (adjusted odds ratio 1·60, 95% credible interval 1·05–2·37; p=0·030). 132 (21·6%) of 610 patients with an SSI and a microbiology culture result had an infection that was resistant to the prophylactic antibiotic used. Resistant infections were detected in 49 (16·6%) of 295 patients in high-HDI countries, in 37 (19·8%) of 187 patients in middle-HDI countries, and in 46 (35·9%) of 128 patients in low-HDI countries (p < 0·001). Interpretation: Countries with a low HDI carry a disproportionately greater burden of SSI than countries with a middle or high HDI and might have higher rates of antibiotic resistance. In view of WHO recommendations on SSI prevention that highlight the absence of high-quality interventional research, urgent, pragmatic, randomised trials based in LMICs are needed to assess measures aiming to reduce this preventable complication

Range extension of the non-indigenous alga Mastocarpus sp. along the Southeastern Pacific coast

The red macroalga Mastocarpus sp. (Rhodophyta, Gigartinales) has been reported as a non-indigenous species in central Chile. In this area the geographic range described for the species encompasses approximately 200 km, from Cobquecura (36°08'S, 72°48'W) up to Punta Lavapié (37°08'S, 73°35'W). Observations carried out at 22 localities along the central-southern Chilean coast allow us to extend the known range of this species approximately 300 km to the north and 600 km to the south. Additional analysis indicated high percentage cover on areas described as the introduction point of the species

Inequalities in accessing public transportation and social exclusion among older adults and people with disabilities in Bangladesh: A scoping review

In the rapidly evolving landscape of urbanisation and transportation infrastructure in Bangladesh, it is critical to address the disparities in public transportation access that disproportionately affect vulnerable people such as older adults and people with disabilities. This scoping review aims to synthesise the available evidence and highlight research gaps on unequal access to public transportation and how these inequalities lead to the social exclusion of older adults and people with disabilities in Bangladesh. We followed the Preferred Reporting Items for Systematic Review and Meta-Analyses, Scoping Review Extension (PRISMA-ScR) guidelines and employed thematic analysis to interpret the findings. Four databases Scopus, Embase, PubMed and Web of Science, and online sources such as Google Scholar and TRID were searched from January 2002 to July 2022. The findings show that the existing modes of transportation are inadequate and non-inclusive and pose both physical (including built environments such as roads, ramps, and footpaths) and social barriers (such as low income, low employment opportunities, and negative social attitude) which reduced the accessibility to workplaces, healthcare, and social networks for these two vulnerable groups. An inclusive and sustainable urban transport infrastructure, older adult-specific and disabled-friendly transportation policies, and behaviour changes are significant steps to improve safety and social inclusion. The transport authorities have ignored the transport necessities of these vulnerable groups and (in)advertently pushed them towards marginalised sections. This study theoretically contributes to the age-friendly city framework for older adults and people with disabilities by adopting an inclusive urban mobility approach for all

Population Aging and Everyday Challenges for Older Adults in Bangladesh

Population aging is an emerging demographic issue in Bangladesh as the number and proportion of older adults are increasing faster than other segments of population. The continued growth of older population will challenge the existing health care services, social and economic security, family structures, and public policies. Moreover, the current COVID-19 pandemic has also profoundly influenced the socioeconomic status, public health services, and subsequently well-being of older adults. This chapter used a range of data sources such as Census data (2011), in-depth interviews with older adults (N = 30), and an online survey on implications of COVID-19 on older adults (N = 221). This chapter aims to highlight the challenges of population aging in Bangladesh. Older adults in Bangladesh tend to face greater challenges in terms of income support, health services, access to public transport, and mobility. Traditionally, the older adults in Bangladesh were being taken care of by the family members but the changing sociodemographic and family structure is likely to influence their living arrangements, social interactions, and mental health. To address the challenges, it is essential to understand the complexities of socioeconomic characteristics, law of property inherence, health, family structure, and cultural perspectives toward older adults for framing better policy that would lead to improved quality of life of older adults

Target-site mutations (AChE and kdr), and PSMO activity in codling moth (Cydia pomonella (L.) (Lepidoptera: Tortricidae)) populations from Spain

Codling moth, Cydia pomonella (L.) is a key pest of global importance that affects apple fruit production and whose populations have developed resistance to insecticides in many apple production areas. In Spain, enhanced cytochrome P450 polysubstrate monooxygenase (PSMO) activity is the main mechanism involved in insecticide detoxification by codling moth, although acetylcholinesterase (AChE) target site mutations have been described in two populations. However, the extent of AChE and knockdown resistance (kdr) mutations in Spain is unknown. To assess the actual occurrence of AChE and kdr mutations concurrently with the frequency of moths with PSMO enhanced activity (R-PSMO), 32 Spanish field populations from four apple-growing areas of Spain and two susceptible laboratory strains were evaluated. R-PSMO was significantly higher in 23 chemically treated field populations from Extremadura, Catalonia and Aragon, with proportions that varied between 25% and 90%, but no significant differences among strains and the non-chemically treated orchards (organic or abandoned) were observed. The AChE mutation (F290V) was detected in all field populations from Catalonia (n=21) and in three field populations from Aragon (n=5), with resistant phenotype proportions varying from 34.2% to 97.5% and from 7.2% to 65% in Catalonia and Aragon, respectively. In addition, the kdr mutation (L1014F) was detected in twelve Catalonian field populations, at rates of incidence ranging between 2.6% and 56.8%. A positive correlation between R-PSMO and AChE mutation was found. The origin of the mutations and their ability to persist and spread in field populations with different management systems is discussed

Molecular taxonomy and community dynamics of Actinobacteria in marine sediments off central Chile

We used amplicon sequencing of the 16S rRNA gene to characterize the diversity and assess temporal and spatial patterns of Actinobacteria operational taxonomic units (OTUs) extracted from sediments of the Humboldt Sulfuretum located off the coast of central Chile. The sediment of this zone is rich in sulfur compounds and organic material and supports a vast microbial community that experiences seasonal changes in response to contrasting oceanographic regimes. We distinguished 498 OTUs distributed among 7 orders, 47 families, and 122 genera (5 of these have been widely recognized for their biotechnological applications), and 56 species. The temporal analyses indicated that some OTUs underwent significant temporal changes in abundance, richness, and diversity that allowed samples to be grouped by sampling dates (seasons) but not by sampling depth or location. Since Actinobacteria are mostly aerobic, higher concentrations of dissolved oxygen near the bottom during the austral autumn-winter seasons result in a more benign environment for this phylum than the upwelling-favorable spring-summer seasons when waters over the shelf are oxygen-deficient. To evaluate the taxonomic diversity and inquire into the community dynamic of Actinobacteria present in the Humboldt Sulfuretum and reported as a potentially untapped source for secondary metabolites this work benefited from culture-independent (molecular) techniques.Se usó pirosecuenciación de la región V6 del gen 16S del ARNr para caracterizar la diversidad y la dinámica espacio-temporal de unidades taxonómicas operacionales (OTUs) del filo Actinobacteria, los que fueron aislados desde sedimentos provenientes del Sulfureto de Humboldt frente a Chile central. Este substrato es rico en compuestos azufrados y material orgánico lo que mantiene una vasta comunidad microbiana que experimenta cambios estacionales en respuesta a regímenes oceanográficos contrastantes. Se identificaron 498 OTUs distribuidas en 7 órdenes, 47 familias, 122 géneros, (5 de los cuales son ampliamente reconocidos por sus aplicaciones biotecnológicas), y 56 especies. El análisis temporal reveló que algunos OTUs presentan diferencias significativas en abundancia, índices de diversidad y riqueza, las que generaron una agrupación de las muestras asociada a la fecha de muestreo (estación del año) y no a la profundidad del sitio de muestreo. Debido a que las Actinobacteria son mayormente aeróbicas, las altas concentraciones de oxígeno disuelto que ocurren en la zona en el otoño-invierno austral, representan condiciones ambientales beneficiosas para este filo, no así las de primavera-verano austral cuando prevalece la hipoxia. El presente trabajo se benefició de la aplicación de métodos cultivo-independientes (métodos moleculares) para evaluar la diversidad taxonómica y examinar la dinámica de uno de los grupos de bacterias presentes en el Sulfureto de Humboldt reportado como una fuente potencial e inexplorada de metabolitos secundarios