213 research outputs found
Moisture, a Vital but Neglected Factor in the Seasonal Ecology of Insects: Hypotheses and Tests of Mechanisms
Of the major physical factors that influence insect seasonal ecology, moisture is least understood and least appreciated. It is our premise that experimental probing of insects from diverse zones and various habitats would reveal general patterns of insect responses to moisture that are as striking as those for photoperiod and temperature. Using the paradigms of photoperiod and temperature as ecophysiological determinants of insect seasonality, we hypothesize that moisture influences insect life cycles via one or more of three mechanisms—as a token stimulus for diapause, modulator of developmental or reproductive rates, or behavioral cue for vital seasonal events. For heuristic purposes, we offer each of these hypotheses in close association with approaches for testing their validity in insects that undergo dry-season dormancy. The approaches appear appropriate for examining the role of moisture in the life histories of terrestrial invertebrates other than insects, as well as plants and microbes that have a seasonal resting stage. Elucidating moisture's role in insect seasonal cycles is critical to the development of comprehensive phenological models, improved insect management systems, and identification of novel evolutionary mechanisms for adaptation to wet-dry seasons, especially in tropical, subtropical, and Mediterranean region
Correlations, fluctuations and stability of a finite-size network of coupled oscillators
The incoherent state of the Kuramoto model of coupled oscillators exhibits
marginal modes in mean field theory. We demonstrate that corrections due to
finite size effects render these modes stable in the subcritical case, i.e.
when the population is not synchronous. This demonstration is facilitated by
the construction of a non-equilibrium statistical field theoretic formulation
of a generic model of coupled oscillators. This theory is consistent with
previous results. In the all-to-all case, the fluctuations in this theory are
due completely to finite size corrections, which can be calculated in an
expansion in 1/N, where N is the number of oscillators. The N -> infinity limit
of this theory is what is traditionally called mean field theory for the
Kuramoto model.Comment: 25 pages (2 column), 12 figures, modifications for resubmissio
Validating the demethylating effects of 5-aza-2'-deoxycytidine in insects requires a whole-genome approach (A reply to Ellers et al.)
This work was initiated as part of Natural Environment Research Council grant NE/J024481/1.We previously demonstrated that treatment with the demethylating agent 5-aza-2′-deoxycytidine (5-azadC) alters the offspring sex ratios produced by females of the parasitoid wasp Nasonia vitripennis (Cook et al. 2015). Females allocate offspring sex ratio in line with Local Mate Competition theory, producing more or less female-biased sex ratios as the number of other females laying eggs on a patch varies, thereby reducing competition amongst their sons for mates. Interestingly, treatment with 5-aza-dC did not ablate the facultative sex allocation response. Instead, sex ratios became less female-biased, a shift in the direction of the optimum sex ratio for paternally-inherited alleles according to genomic conflict theory. This was the first (albeit indirect) experimental evidence for genomic conflict over sex allocation. Ellers et al. (2019) have since assayed the effects of 5-aza-dC on DNA methylation in ten Nasonia genes, finding no evidence of demethylation in these 10 genes, from which they conclude that 5-aza-dC has no demethylating capability in Nasonia vitripennis. Quantifying the efficacy of 5-aza-dC in terms of demethylation is indeed crucial to in-depth interpretation of studies using 5-aza-dC to link phenotypes to epigenetic regulation. Here, we outline the mode of action of 5-aza-dC and demonstrate that determining the efficacy of 5-aza-dC in insect systems requires a whole-genome approach.PostprintPeer reviewe
An R-Package for the Deconvolution and Integration of 1D NMR Data: MetaboDecon1D
NMR spectroscopy is a widely used method for the detection and quantification of metabolites in complex biological fluids. However, the large number of metabolites present in a biological sample such as urine or plasma leads to considerable signal overlap in one-dimensional NMR spectra, which in turn hampers both signal identification and quantification. As a consequence, we have developed an easy to use R-package that allows the fully automated deconvolution of overlapping signals in the underlying Lorentzian line-shapes. We show that precise integral values are computed, which are required to obtain both relative and absolute quantitative information. The algorithm is independent of any knowledge of the corresponding metabolites, which also allows the quantitative description of features of yet unknown identity
Infrared nanoscopy of Dirac plasmons at the graphene-SiO2 interface
We report on infrared (IR) nanoscopy of 2D plasmon excitations of Dirac
fermions in graphene. This is achieved by confining mid-IR radiation at the
apex of a nanoscale tip: an approach yielding two orders of magnitude increase
in the value of in-plane component of incident wavevector q compared to free
space propagation. At these high wavevectors, the Dirac plasmon is found to
dramatically enhance the near-field interaction with mid-IR surface phonons of
SiO2 substrate. Our data augmented by detailed modeling establish graphene as a
new medium supporting plasmonic effects that can be controlled by gate voltage.Comment: 12 pages, 4 figure
High sensitivity measurements of the CMB power spectrum with the extended Very Small Array
We present deep Ka-band ( GHz) observations of the CMB made
with the extended Very Small Array (VSA). This configuration produces a
naturally weighted synthesized FWHM beamwidth of arcmin which covers
an -range of 300 to 1500. On these scales, foreground extragalactic
sources can be a major source of contamination to the CMB anisotropy. This
problem has been alleviated by identifying sources at 15 GHz with the Ryle
Telescope and then monitoring these sources at 33 GHz using a single baseline
interferometer co-located with the VSA. Sources with flux densities \gtsim 20
mJy at 33 GHz are subtracted from the data. In addition, we calculate a
statistical correction for the small residual contribution from weaker sources
that are below the detection limit of the survey.
The CMB power spectrum corrected for Galactic foregrounds and extragalactic
point sources is presented. A total -range of 150-1500 is achieved by
combining the complete extended array data with earlier VSA data in a compact
configuration. Our resolution of allows the first 3
acoustic peaks to be clearly delineated. The is achieved by using mosaiced
observations in 7 regions covering a total area of 82 sq. degrees. There is
good agreement with WMAP data up to where WMAP data run out of
resolution. For higher -values out to , the agreement in
power spectrum amplitudes with other experiments is also very good despite
differences in frequency and observing technique.Comment: 16 pages. Accepted in MNRAS (minor revisions
Evolutionary relationships among barley and <i>Arabidopsis</i> core circadian clock and clock-associated genes
The circadian clock regulates a multitude of plant developmental and metabolic processes. In crop species, it contributes significantly to plant performance and productivity and to the adaptation and geographical range over which crops can be grown. To understand the clock in barley and how it relates to the components in the Arabidopsis thaliana clock, we have performed a systematic analysis of core circadian clock and clock-associated genes in barley, Arabidopsis and another eight species including tomato, potato, a range of monocotyledonous species and the moss, Physcomitrella patens. We have identified orthologues and paralogues of Arabidopsis genes which are conserved in all species, monocot/dicot differences, species-specific differences and variation in gene copy number (e.g. gene duplications among the various species). We propose that the common ancestor of barley and Arabidopsis had two-thirds of the key clock components identified in Arabidopsis prior to the separation of the monocot/dicot groups. After this separation, multiple independent gene duplication events took place in both monocot and dicot ancestors. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1007/s00239-015-9665-0) contains supplementary material, which is available to authorized users
Detailed SZ study of 19 LoCuSS galaxy clusters: masses and temperatures out to the virial radius
We present 16-GHz AMI SZ observations of 19 clusters with L_X >7x10^37 W
(h50=1) selected from the LoCuS survey (0.142<z<0.295) and of A1758b, in the
FoV of A1758a. We detect 17 clusters with 5-23sigma peak surface brightnesses.
Cluster parameters are obtained using a Bayesian cluster analysis. We fit
isothermal beta-models to our data and assume the clusters are virialized (with
all the kinetic energy in gas internal energy). Our gas temperature, T_AMI, is
derived from AMI SZ data, not from X-ray spectroscopy. Cluster parameters
internal to r500 are derived assuming HSE. We find: (i) Different gNFW
parameterizations yield significantly different parameter degeneracies. (ii)
For h70 = 1, we find the virial radius r200 to be typically 1.6+/-0.1 Mpc and
the total mass M_T(r200) typically to be 2.0-2.5xM_T(r500).(iii) Where we have
found M_T X-ray (X) and weak-lensing (WL) values in the literature, there is
good agreement between WL and AMI estimates (with M_{T,AMI}/M_{T,WL}
=1.2^{+0.2}_{-0.3} and =1.0+/-0.1 for r500 and r200, respectively). In
comparison, most Suzaku/Chandra estimates are higher than for AMI (with
M_{T,X}/M_{T,AMI}=1.7+/-0.2 within r500), particularly for the stronger
mergers.(iv) Comparison of T_AMI to T_X sheds light on high X-ray masses: even
at large r, T_X can substantially exceed T_AMI in mergers. The use of these
higher T_X values will give higher X-ray masses. We stress that large-r T_SZ
and T_X data are scarce and must be increased. (v) Despite the paucity of data,
there is an indication of a relation between merger activity and SZ
ellipticity. (vi) At small radius (but away from any cooling flow) the SZ
signal (and T_AMI) is less sensitive to ICM disturbance than the X-ray signal
(and T_X) and, even at high r, mergers affect n^2-weighted X-ray data more than
n-weighted SZ, implying significant shocking or clumping or both occur even in
the outer parts of mergers.Comment: 45 pages, 33 figures, 13 tables Accepted for publication in MNRA
Planck intermediate results. VIII. Filaments between interacting clusters
About half of the baryons of the Universe are expected to be in the form of
filaments of hot and low density intergalactic medium. Most of these baryons
remain undetected even by the most advanced X-ray observatories which are
limited in sensitivity to the diffuse low density medium. The Planck satellite
has provided hundreds of detections of the hot gas in clusters of galaxies via
the thermal Sunyaev-Zel'dovich (tSZ) effect and is an ideal instrument for
studying extended low density media through the tSZ effect. In this paper we
use the Planck data to search for signatures of a fraction of these missing
baryons between pairs of galaxy clusters. Cluster pairs are good candidates for
searching for the hotter and denser phase of the intergalactic medium (which is
more easily observed through the SZ effect). Using an X-ray catalogue of
clusters and the Planck data, we select physical pairs of clusters as
candidates. Using the Planck data we construct a local map of the tSZ effect
centered on each pair of galaxy clusters. ROSAT data is used to construct X-ray
maps of these pairs. After having modelled and subtracted the tSZ effect and
X-ray emission for each cluster in the pair we study the residuals on both the
SZ and X-ray maps. For the merging cluster pair A399-A401 we observe a
significant tSZ effect signal in the intercluster region beyond the virial
radii of the clusters. A joint X-ray SZ analysis allows us to constrain the
temperature and density of this intercluster medium. We obtain a temperature of
kT = 7.1 +- 0.9, keV (consistent with previous estimates) and a baryon density
of (3.7 +- 0.2)x10^-4, cm^-3. The Planck satellite mission has provided the
first SZ detection of the hot and diffuse intercluster gas.Comment: Accepted by A&
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