187 research outputs found
Gender effects on cytidine analogue metabolism and myelodysplastic syndrome treatment outcomes
In vivo, half-lives of cytidine analogues such as 5-azacytidine and decitabine, used to treat myelodysplastic syndromes (MDS), are determined largely by cytidine deaminase (CDA), an enzyme that rapidly metabolizes these drugs into inactive uridine counterparts. Genetic factors influence CDA activity, and hence, could impact 5-azacytidine/decitabine levels and efficacy, a possibility requiring evaluation. Using an HPLC assay, plasma CDA activity was confirmed to be decreased in individuals with the CDA SNP A79C. More interestingly, there was an even larger decrease in females. Explaining the decrease in enzyme activity, liver CDA expression was significantly lower in female versus male mice. As expected, decitabine plasma levels, measured by mass-spectrometry, were significantly higher in females. In mathematical modeling, the detrimental effect of shortening half-life of S-phase specific therapy was amplified in low S-phase fraction disease (e.g., MDS). Accordingly, in multivariate analysis of MDS patients treated with 5-azacytidine/decitabine, overall survival was significantly worse in males
The Dynamical Evolution of the Pleiades
We present the results of a numerical simulation of the history and future
development of the Pleiades. This study builds on our previous one that
established statistically the present-day structure of this system. Our
simulation begins just after molecular cloud gas has been expelled by the
embedded stars. We then follow, using an N body code, the stellar dynamical
evolution of the cluster to the present and beyond. Our initial state is that
which evolves, over the 125 Myr age of the cluster, to a configuration most
closely matching the current one.
We find that the original cluster, newly stripped of gas, already had a
virial radius of 4 pc. This configuration was larger than most observed,
embedded clusters. Over time, the cluster expanded further and the central
surface density fell by about a factor of two. We attribute both effects to the
liberation of energy from tightening binaries of short period. Indeed, the
original binary fraction was close to unity. The ancient Pleiades also had
significant mass segregation, which persists in the cluster today.
In the future, the central density of the Pleiades will continue to fall. For
the first few hundred Myr, the cluster as a whole will expand because of
dynamical heating by binaries. The expansion process is aided by mass loss
through stellar evolution, which weakens the system's gravitational binding. At
later times, the Galactic tidal field begins to heavily deplete the cluster
mass. It is believed that most open clusters are eventually destroyed by close
passage of a giant molecular cloud. Barring that eventuality, the density
falloff will continue for as long as 1 Gyr, by which time most of the cluster
mass will have been tidally stripped away by the Galactic field.Comment: 45 pages, 13 figures, 2 tables; Accepted for publication in MNRA
On Machine-Learned Classification of Variable Stars with Sparse and Noisy Time-Series Data
With the coming data deluge from synoptic surveys, there is a growing need
for frameworks that can quickly and automatically produce calibrated
classification probabilities for newly-observed variables based on a small
number of time-series measurements. In this paper, we introduce a methodology
for variable-star classification, drawing from modern machine-learning
techniques. We describe how to homogenize the information gleaned from light
curves by selection and computation of real-numbered metrics ("feature"),
detail methods to robustly estimate periodic light-curve features, introduce
tree-ensemble methods for accurate variable star classification, and show how
to rigorously evaluate the classification results using cross validation. On a
25-class data set of 1542 well-studied variable stars, we achieve a 22.8%
overall classification error using the random forest classifier; this
represents a 24% improvement over the best previous classifier on these data.
This methodology is effective for identifying samples of specific science
classes: for pulsational variables used in Milky Way tomography we obtain a
discovery efficiency of 98.2% and for eclipsing systems we find an efficiency
of 99.1%, both at 95% purity. We show that the random forest (RF) classifier is
superior to other machine-learned methods in terms of accuracy, speed, and
relative immunity to features with no useful class information; the RF
classifier can also be used to estimate the importance of each feature in
classification. Additionally, we present the first astronomical use of
hierarchical classification methods to incorporate a known class taxonomy in
the classifier, which further reduces the catastrophic error rate to 7.8%.
Excluding low-amplitude sources, our overall error rate improves to 14%, with a
catastrophic error rate of 3.5%.Comment: 23 pages, 9 figure
L Dwarfs Found in Sloan Digital Sky Survey Commissioning Data II. Hobby-Eberly Telescope Observations
Low dispersion optical spectra have been obtained with the Hobby-Eberly
Telescope of 22 very red objects found in early imaging data from the Sloan
Digital Sky Survey. The objects are assigned spectral types on the 2MASS system
(Kirkpatrick et al. 1999) and are found to range from late M to late L. The
red- and near-infrared colors from SDSS and 2MASS correlate closely with each
other, and most of the colors are closely related to spectral type in this
range; the exception is the (i^* - z^*) color, which appears to be independent
of spectral type between about M7 and L4. The spectra suggest that this
independence is due to the disappearance of the TiO and VO absorption in the
i-band for later spectral types; to the presence of strong Na I and K I
absorption in the i-band; and to the gradual disappearance of the 8400 Angstrom
absorption of TiO and FeH in the z-band.Comment: 20 pages, 7 figures, accepted by AJ, a version with higher resolution
figures can be found at ftp://ftp.astro.psu.edu/pub/dps/hetld.p
LSST Science Book, Version 2.0
A survey that can cover the sky in optical bands over wide fields to faint
magnitudes with a fast cadence will enable many of the exciting science
opportunities of the next decade. The Large Synoptic Survey Telescope (LSST)
will have an effective aperture of 6.7 meters and an imaging camera with field
of view of 9.6 deg^2, and will be devoted to a ten-year imaging survey over
20,000 deg^2 south of +15 deg. Each pointing will be imaged 2000 times with
fifteen second exposures in six broad bands from 0.35 to 1.1 microns, to a
total point-source depth of r~27.5. The LSST Science Book describes the basic
parameters of the LSST hardware, software, and observing plans. The book
discusses educational and outreach opportunities, then goes on to describe a
broad range of science that LSST will revolutionize: mapping the inner and
outer Solar System, stellar populations in the Milky Way and nearby galaxies,
the structure of the Milky Way disk and halo and other objects in the Local
Volume, transient and variable objects both at low and high redshift, and the
properties of normal and active galaxies at low and high redshift. It then
turns to far-field cosmological topics, exploring properties of supernovae to
z~1, strong and weak lensing, the large-scale distribution of galaxies and
baryon oscillations, and how these different probes may be combined to
constrain cosmological models and the physics of dark energy.Comment: 596 pages. Also available at full resolution at
http://www.lsst.org/lsst/sciboo
LSST: from Science Drivers to Reference Design and Anticipated Data Products
(Abridged) We describe here the most ambitious survey currently planned in
the optical, the Large Synoptic Survey Telescope (LSST). A vast array of
science will be enabled by a single wide-deep-fast sky survey, and LSST will
have unique survey capability in the faint time domain. The LSST design is
driven by four main science themes: probing dark energy and dark matter, taking
an inventory of the Solar System, exploring the transient optical sky, and
mapping the Milky Way. LSST will be a wide-field ground-based system sited at
Cerro Pach\'{o}n in northern Chile. The telescope will have an 8.4 m (6.5 m
effective) primary mirror, a 9.6 deg field of view, and a 3.2 Gigapixel
camera. The standard observing sequence will consist of pairs of 15-second
exposures in a given field, with two such visits in each pointing in a given
night. With these repeats, the LSST system is capable of imaging about 10,000
square degrees of sky in a single filter in three nights. The typical 5
point-source depth in a single visit in will be (AB). The
project is in the construction phase and will begin regular survey operations
by 2022. The survey area will be contained within 30,000 deg with
, and will be imaged multiple times in six bands, ,
covering the wavelength range 320--1050 nm. About 90\% of the observing time
will be devoted to a deep-wide-fast survey mode which will uniformly observe a
18,000 deg region about 800 times (summed over all six bands) during the
anticipated 10 years of operations, and yield a coadded map to . The
remaining 10\% of the observing time will be allocated to projects such as a
Very Deep and Fast time domain survey. The goal is to make LSST data products,
including a relational database of about 32 trillion observations of 40 billion
objects, available to the public and scientists around the world.Comment: 57 pages, 32 color figures, version with high-resolution figures
available from https://www.lsst.org/overvie
The Fourteenth Data Release of the Sloan Digital Sky Survey: First Spectroscopic Data from the extended Baryon Oscillation Spectroscopic Survey and from the second phase of the Apache Point Observatory Galactic Evolution Experiment
The fourth generation of the Sloan Digital Sky Survey (SDSS-IV) has been in
operation since July 2014. This paper describes the second data release from
this phase, and the fourteenth from SDSS overall (making this, Data Release
Fourteen or DR14). This release makes public data taken by SDSS-IV in its first
two years of operation (July 2014-2016). Like all previous SDSS releases, DR14
is cumulative, including the most recent reductions and calibrations of all
data taken by SDSS since the first phase began operations in 2000. New in DR14
is the first public release of data from the extended Baryon Oscillation
Spectroscopic Survey (eBOSS); the first data from the second phase of the
Apache Point Observatory (APO) Galactic Evolution Experiment (APOGEE-2),
including stellar parameter estimates from an innovative data driven machine
learning algorithm known as "The Cannon"; and almost twice as many data cubes
from the Mapping Nearby Galaxies at APO (MaNGA) survey as were in the previous
release (N = 2812 in total). This paper describes the location and format of
the publicly available data from SDSS-IV surveys. We provide references to the
important technical papers describing how these data have been taken (both
targeting and observation details) and processed for scientific use. The SDSS
website (www.sdss.org) has been updated for this release, and provides links to
data downloads, as well as tutorials and examples of data use. SDSS-IV is
planning to continue to collect astronomical data until 2020, and will be
followed by SDSS-V.Comment: SDSS-IV collaboration alphabetical author data release paper. DR14
happened on 31st July 2017. 19 pages, 5 figures. Accepted by ApJS on 28th Nov
2017 (this is the "post-print" and "post-proofs" version; minor corrections
only from v1, and most of errors found in proofs corrected
Quantitative historical analysis uncovers a single dimension of complexity that structures global variation in human social organization.
Do human societies from around the world exhibit similarities in the way that they are structured, and show commonalities in the ways that they have evolved? These are long-standing questions that have proven difficult to answer. To test between competing hypotheses, we constructed a massive repository of historical and archaeological information known as "Seshat: Global History Databank." We systematically coded data on 414 societies from 30 regions around the world spanning the last 10,000 years. We were able to capture information on 51 variables reflecting nine characteristics of human societies, such as social scale, economy, features of governance, and information systems. Our analyses revealed that these different characteristics show strong relationships with each other and that a single principal component captures around three-quarters of the observed variation. Furthermore, we found that different characteristics of social complexity are highly predictable across different world regions. These results suggest that key aspects of social organization are functionally related and do indeed coevolve in predictable ways. Our findings highlight the power of the sciences and humanities working together to rigorously test hypotheses about general rules that may have shaped human history
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