FILO Ciliophora

Capítulo de libroEl conocimiento de la diversidad de los ciliados planctónicos en aguas de Galicia hasta la fecha es muy limitado. La mayor parte de los estudios publicados solo incluyen grandes grupos o algunas especies dominantes, que clásicamente se identificaban por microscopía óptica adaptada y hoy en día se se usan técnicas moleculares basadas en la amplificación, clonación y secuenciación de regiones del gen codificador del ARNr 18S, que permite la identificación filogenética de las "especies" o OTUs que componen las comunidades de ciliados planctónicos, por ejemplo. La lista añadida incluye 25 familias y 88 géneros y especies, recogidos en el marco de proyectos de observación sistemática del IEO... La clasificación usada se basa en Lynn&Small (2002) y la nomenclatura empleada en WORMS (Warren, 2011). Diferenciación por ambientes pelágicos.En prens

The Beaker phenomenon and the genomic transformation of northwest Europe

From around 2750 to 2500 bc, Bell Beaker pottery became widespread across western and central Europe, before it disappeared between 2200 and 1800 bc. The forces that propelled its expansion are a matter of long-standing debate, and there is support for both cultural diffusion and migration having a role in this process. Here we present genome-wide data from 400 Neolithic, Copper Age and Bronze Age Europeans, including 226 individuals associated with Beaker-complex artefacts. We detected limited genetic affinity between Beaker-complex-associated individuals from Iberia and central Europe, and thus exclude migration as an important mechanism of spread between these two regions. However, migration had a key role in the further dissemination of the Beaker complex. We document this phenomenon most clearly in Britain, where the spread of the Beaker complex introduced high levels of steppe-related ancestry and was associated with the replacement of approximately 90% of Britain’s gene pool within a few hundred years, continuing the east-to-west expansion that had brought steppe-related ancestry into central and northern Europe over the previous centuries

Dinophysis Ehrenberg (Dinophyceae) in Southern Chile harbours red cryptophyte plastids from Rhodomonas/Storeatula clade

Photosynthetic species of the dinoflagellate genus Dinophysis are known to retain temporary cryptophyte plastids of the Teleaulax/Plagioselmis/Geminigera clade after feeding the ciliate Mesodinium rubrum. In the present study, partial plastid 23S rDNA sequences were retrieved in Southern Chilean waters from oceanic (Los Lagos region), and fjord systems (Aysén region), in single cells of Dinophysis and accompanying organisms (the heliozoan Actinophrys cf. sol and tintinnid ciliates), identified by means of morphological discrimination under the light microscope. All plastid 23S rDNA sequences (n = 23) from Dinophysis spp. (Dinophysis acuta, D. caudata, D. tripos and D. subcircularis) belonged to cryptophytes from clade V (Rhinomonas, Rhodomonas and Storeatula), although they could not be identified at genus level. Moreover, five plastid sequences obtained from heliozoans (Actinophryida, tentatively identified as Actinophrys cf. sol), and tintinnid ciliates, grouped together with those cryptophyte sequences. In contrast, two additional sequences from tintinnids belonged to other taxa (chlorophytes and cyanobacteria). Overall, the present study represents the first time that red cryptophyte plastids outside of the Teleaulax/Plagioselmis/Geminigera clade dominate in wild photosynthetic Dinophysis spp. These findings suggest that either Dinophysis spp. are able to feed on other ciliate prey than Mesodinium and/or that cryptophyte plastids from clade V prevail in members of the M. rubrum species complex in the studied area

Fine scale physical-biological interactions during a shift from relaxation to upwelling with a focus on Dinophysis acuminata and its potential ciliate prey.

Wind reversals and quick transitions from relaxation to upwelling in coastal areas cause major changes in water column structure, phytoplankton distribution and dominance, and rates of physiological processes. The cruise “ASIMUTH-Rías” (17–21 June 2013) was carried out in the Galician Rías and adjacent shelf, at the time of a DSP outbreak, to study small-scale physical processes associated with late spring blooms of D. acuminata and accompanying microzooplanktonic ciliates with the overall objective of improving predictive models of their occurrence. The cruise coincided with the initiation of an upwelling pulse following relaxation and deepening of a previously formed thin layer of diatoms. A 36-h cell cycle study carried on 18–20 June showed the vertical excursions of the thin layer, mainly delimited by the 13.5–14 °C isotherms and turbulence levels (ε) of 10−8–10−6 m2 s−3, as well as marked changes in phytoplankton composition (increased density and dominance of diatoms). There was no evidence of daily vertical migration of D. acuminata, which remained in the top layer during the cycle study, but the opposite was observed in the ciliate populations. Dinophysis and its potential prey (Mesodinium species) cell maxima overlapped after midday, when the ciliate moved to the surface, suggesting an “ambush” strategy of Dinophysis to catch prey. A remarkable decline (from 0.65 to 0.33 d−1) in division rates (µ) of D. acuminata was associated with increased turbulence (ε 2°C in about 8 h). In contrast, high division rates (µmin ∼ 0.69 d−1) persisted at a mid-shelf station where environmental conditions below the mixed layer were more stable. The onset of upwelling pulses appears to have a double negative effect on the net growth of Dinophysis populations: a direct physical effect due to advective dispersion and an indirect effect, decreased division rates. The latter would be caused by the rapid cooling of the mixed layer, and the increased turbulence at the surface resulting in shear stress to the cells. The short-term impact of upwelling pulses (and the winds promoting it) on the physiology of Dinophysis and its ciliate prey, and the role of mid-shelf populations of Dinophysis as a relatively undisturbed reservoir for the inoculation of subsequent blooms are discussed

Changes in distribution of phytoplankton functional groups distribution, pigment composition and the realized niche of Dinophysis acuminata at the onset of an upwelling event

Dinophysis acuminata is the major cause of lengthy harvesting bans in shellfish growing areas in European Atlantic waters. In North Western Iberian shelf waters, the growing season of D. acuminata lasts throughout the upwelling season (ca. from March to September). Once environmental conditions trigger initial population growth, abundance fluctuations are coupled to the event-scale dynamics of coastal upwelling-relaxation/downwelling cycles. The “ASIMUTH-Rias” cruise (17–21 June 2013) in the Galician Rias (Pontevedra and Vigo) and adjacent shelf, during a DSP outbreak, aimed to explore small-scale physical processes associated with late spring blooms (> 103 cells L-1) of D. acuminata. The cruise coincided with the initiation of an upwelling pulse following relaxation and deepening of a previously formed thin layer of centric colony-forming diatoms. In this work, a niche (sensu Hutchinson) approach based on an Outlying Mean Index (OMI) analysis was used to describe the realized niche of D. acuminata during transient conditions. The OMI analysis was applied to fine-scale measurements of physical properties, HPLC-derived pigment composition, and phytoplankton functional groups in cross-shelf transects and in a 36-h study at a fixed station. Although having a wide niche breath, the realized niche of D. acuminata (cell maximum 5 ×103 cells L-1 between 3 and 5 m) was characterized by outflowing warmer (15-16 °C) waters with high turbulence (? < 10-6 m2 s-3), high light intensity, and low nitrate concentrations. These results show that during a transient upwelling-initiation scenario, mid-shelf waters provided a more suitable habitat for D. acuminata and the accompanying dinoflagellate populations than waters inside the ría

The genomic history of the Iberian Peninsula over the past 8000 years

We assembled genome-wide data from 271 ancient Iberians, of whom 176 are from the largely unsampled period after 2000 BCE, thereby providing a high-resolution time transect of the Iberian Peninsula. We document high genetic substructure between northwestern and southeastern hunter-gatherers before the spread of farming. We reveal sporadic contacts between Iberia and North Africa by ~2500 BCE and, by ~2000 BCE, the replacement of 40% of Iberia’s ancestry and nearly 100% of its Y-chromosomes by people with Steppe ancestry. We show that, in the Iron Age, Steppe ancestry had spread not only into Indo-European–speaking regions but also into non-Indo-European–speaking ones, and we reveal that present-day Basques are best described as a typical Iron Age population without the admixture events that later affected the rest of Iberia. Additionally, we document how, beginning at least in the Roman period, the ancestry of the peninsula was transformed by gene flow from North Africa and the eastern Mediterranean.J.M.F., F.J.L.-C., J.I.M., F.X.O., J.D., and M.S.B. were supported by HAR2017-86509-P, HAR2017-87695-P, and SGR2017-11 from the Generalitat de Catalunya, AGAUR agency. C.L.-F. was supported by Obra Social La Caixa and by FEDER-MINECO (BFU2015- 64699-P). L.B.d.L.E. was supported by REDISCO-HAR2017-88035-P (Plan Nacional I+D+I, MINECO). C.L., P.R., and C.Bl. were supported by MINECO (HAR2016-77600-P). A.Esp., J.V.-V., G.D., and D.C.S.-G. were supported by MINECO (HAR2009-10105 and HAR2013-43851-P). D.J.K. and B.J.C. were supported by NSF BCS-1460367. K.T.L., A.W., and J.M. were supported by NSF BCS-1153568. J.F.-E. and J.A.M.-A. were supported by IT622-13 Gobierno Vasco, Diputación Foral de Álava, and Diputación Foral de Gipuzkoa. We acknowledge support from the Portuguese Foundation for Science and Technology (PTDC/EPH-ARQ/4164/2014) and the FEDER-COMPETE 2020 project 016899. P.S. was supported by the FCT Investigator Program (IF/01641/2013), FCT IP, and ERDF (COMPETE2020 – POCI). M.Si. and K.D. were supported by a Leverhulme Trust Doctoral Scholarship awarded to M.B.R. and M.P. D.R. was supported by an Allen Discovery Center grant from the Paul Allen Foundation, NIH grant GM100233, and the Howard Hughes Medical Institute. V.V.-M. and W.H. were supported by the Max Planck Society

The genomic history of the Iberian Peninsula over the past 8000 years

We assembled genome-wide data from 271 ancient Iberians, of whom 176 are from the largely unsampled period after 2000 BCE, thereby providing a high-resolution time transect of the Iberian Peninsula. We document high genetic substructure between northwestern and southeastern hunter-gatherers before the spread of farming. We reveal sporadic contacts between Iberia and North Africa by ~2500 BCE and, by ~2000 BCE, the replacement of 40% of Iberia's ancestry and nearly 100% of its Y-chromosomes by people with Steppe ancestry. We show that, in the Iron Age, Steppe ancestry had spread not only into Indo-European-speaking regions but also into non-Indo-European-speaking ones, and we reveal that present-day Basques are best described as a typical Iron Age population without the admixture events that later affected the rest of Iberia. Additionally, we document how, beginning at least in the Roman period, the ancestry of the peninsula was transformed by gene flow from North Africa and the eastern Mediterranean.J.M.F., F.J.L.-C., J.I.M., F.X.O., J.D., and M.S.B. were supported by HAR2017-86509-P, HAR2017-87695-P, and SGR2017-11 from the Generalitat de Catalunya, AGAUR agency. C.L.-F. was supported by Obra Social La Caixa and by FEDER-MINECO (BFU2015- 64699-P). L.B.d.L.E. was supported by REDISCO-HAR2017-88035-P (Plan Nacional I+D+I, MINECO). C.L., P.R., and C.Bl. were supported by MINECO (HAR2016-77600-P). A.Esp., J.V.-V., G.D., and D.C.S.-G. were supported by MINECO (HAR2009-10105 and HAR2013-43851-P). D.J.K. and B.J.C. were supported by NSF BCS-1460367. K.T.L., A.W., and J.M. were supported by NSF BCS-1153568. J.F.-E. and J.A.M.-A. were supported by IT622-13 Gobierno Vasco, Diputación Foral de Álava, and Diputación Foral de Gipuzkoa. We acknowledge support from the Portuguese Foundation for Science and Technology (PTDC/EPH-ARQ/4164/2014) and the FEDER-COMPETE 2020 project 016899. P.S. was supported by the FCT Investigator Program (IF/01641/2013), FCT IP, and ERDF (COMPETE2020 – POCI). M.Si. and K.D. were supported by a Leverhulme Trust Doctoral Scholarship awarded to M.B.R. and M.P. D.R. was supported by an Allen Discovery Center grant from the Paul Allen Foundation, NIH grant GM100233, and the Howard Hughes Medical Institute. V.V.-M. and W.H. were supported by the Max Planck Society