99 research outputs found
Rapid and sensitive real-time assay for the detection of respiratory syncytial virus using RT-SIBAĀ®
Development and evaluation of a rapid nucleic acid amplification method to detect influenza A and B viruses in human respiratory specimens
Isothermal nucleic acid amplification methods can potentially shorten the amount of time required to diagnose influenza. We developed and evaluated a novel isothermal nucleic acid amplification method, RT-SIBA to rapidly detect and differentiate between influenza A and B viruses in a single reaction tube. The performance of the RT-SIBA Influenza assay was compared with two established RT-PCR methods. The sensitivities of the RT-SIBA, RealStar RT-PCR, and CDC RT-PCR assays for the detection of influenza A and B viruses in the clinical specimens were 98.8%, 100%, and 89.3%, respectively. All three assays demonstrated a specificity of 100%. The average time to positive result was significantly shorter with the RT-SIBA Influenza assay (90 min). The method can be run using battery-operated, portable devices with a small footprint and therefore has potential applications in both laboratory and near-patient settings. (C) 2018 Elsevier Inc. All rights reserved.Peer reviewe
Perception about being an aged person in South-Western Nigeria
This paper investigates the perception about being an aged person in SouthWestern Nigeria. 594 aged persons were interviewed through questionnaire
administration in Lagos and Oyo states of South-western Nigeria. The
univariate, bivariate and One-way Analysis of variance (F-ratios) were employed
in the analyses of this research. The major findings of this study are: firstly, the
univariate and bivariate results indicate that there is low-perception about being
an aged person. Secondly, One-way Analysis of variance (F-ratios) show that the
study location, age category, means of livelihood; and usual place of residence
(Oyo and Lagos state rural settings) have significant influences on perception
about being an aged person in South-Western Nigeria. Thus, the paper
recommends the following: firstly, that aged persons from Lagos state who are
50-79 years should begin to admit from now that they are āelderly peopleā
despite the fact that some of them are retired and still physically active.
Secondly, the salary earners who are still working as well as Lagos-rural
dwellers should urgently assume their roles as elders both in the families and in
larger Nigerian society
Detection of human rhinoviruses by reverse transcription strand invasion based amplification method (RT-SIBA)
Background: Rhinovirus (RV), a major
cause of respiratory infection in humans, imposes an enormous economic
burden due to the direct and indirect costs associated with the illness.
Accurate and timely diagnosis is crucial for deciding the appropriate
clinical approach and minimizing unnecessary prescription of
antibiotics. Diagnosis of RV is extremely challenging due to genetic and
serological variability among its numerous types and their similarity
to enteroviruses.Objective: We sought to develop a
rapid nucleic acid test that can be used for the detection of Rhinovirus
within both laboratory and near patient settings.Study
design: We developed and evaluated a novel isothermal nucleic acid
amplification method called Reverse Transcription Strand Invasion-Based
Amplification (RT-SIBA) to rapidly detect Rhinovirus from clinical
specimens.Result: The method, RT-SIBA, detected RV
in clinical specimens with high analytical sensitivity (96%) and
specificity (100%). The time to positive result was significantly
shorter for the RV RT-SIBA assay than for a reference RV nucleic acid
amplification method (RT-qPCR).Conclusion: The
rapid detection time of the RV SIBA assay, as well as its compatibility
with portable instruments, will facilitate prompt diagnosis of infection
and thereby improve patient care.</div
Understanding the costs of investigating coliform and E. coli detections during routine drinking water quality monitoring
Bacteriological failure investigations are crucial in the provision of safe, clean drinking water as part of a process of quality assurance and continual improvement. However, the financial implications of investigating coliform and Escherichia coli failures during routine water quality monitoring are poorly understood in the industry. The investigations for 737 coliform and E. coli failures across five UK water companies were analysed in this paper. The principal components of investigation costs were staff hours worked, re-samples collected, transportation, and special investigatory activities related to the sample collection location. The average investigation costs ranged from Ā£575 for a customer tap failure to Ā£4,775 for a water treatment works finished water failure. These costs were compared to predictions for US utilities under the Revised Total Coliform Rule. Improved understanding of the financial and staffing implications of investigating bacteriological failures can be used to budget operational expenditures and justify increased funding for preventive strategies
Detection of human rhinoviruses by reverse transcription strand invasion based amplification method (RT-SIBA)
Background: Rhinovirus (RV), a major cause of respiratory infection in humans, imposes an enormous economic burden due to the direct and indirect costs associated with the illness. Accurate and timely diagnosis is crucial for deciding the appropriate clinical approach and minimizing unnecessary prescription of antibiotics. Diagnosis of RV is extremely challenging due to genetic and serological variability among its numerous types and their similarity to enteroviruses. Objective: We sought to develop a rapid nucleic acid test that can be used for the detection of Rhinovirus within both laboratory and near patient settings. Study design: We developed and evaluated a novel isothermal nucleic acid amplification method called Reverse Transcription Strand Invasion-Based Amplification (RT-SIBA) to rapidly detect Rhinovirus from clinical specimens. Result: The method, RT-SIBA, detected RV in clinical specimens with high analytical sensitivity (96%) and specificity (100%). The time to positive result was significantly shorter for the RV RT-SIBA assay than for a reference RV nucleic acid amplification method (RT-qPCR). Conclusion: The rapid detection time of the RV SIBA assay, as well as its compatibility with portable instruments, will facilitate prompt diagnosis of infection and thereby improve patient care.Peer reviewe
Synergistic antimicrobial interaction between honey and phage against Escherichia coli biofilms
CEB Annual Meeting 2017Chronic wounds that take months, years or may even never heal present a major biological and financial problem on both individual patients and the broader health system. Chronic wounds afford a hostile environment of damaged tissues that allow bacterial proliferation and further wound colonization. Wound colonization by bacterial biofilms is one of the main obstacles of chronic wounds healing. Biofilms are structured communities of bacterial cells enclosed in a self-produced polymeric matrix and adhered to an inert or living surface. Escherichia coli is among the most common colonizers of infected wounds and it is a prolific biofilm former. Living in biofilm communities, cells are protected, become more difficult to control and eradicate, and less susceptible to antibiotic therapy. Due to the vast increase of antibiotic resistant bacteria, there is a renewed interestin pre-antibiotic therapies. Years before the discovery of modern antibiotics, bacteriophages(phages) that are bacterial viruses, and beehive products such as honey were extensively used for their antimicrobial properties. Phages, are the natural bacterial enemies and have proven efficacy towards antibiotic-resistant bacteria, have self-replicating nature, do not interfere with the commensal flora and many studies acknowledge that phages can destroy, tovarying extent, mono and mixed biofilm populations. Honey, on the other hand, has a broad spectrum antibacterial activity against bacteria and its high viscosity provides a protective barrier against infections being suitable for skincare, promoting the wound healing, tissue regeneration and anti-inflammatory process. This work presents insights into the proceedings triggering E.coli biofilm control with phage, two Portuguese(PT) honeys and their combination, achieved through standard antimicrobial activity assays, zeta potential and flow cytometry studies and further visual insights sought by SEM and TEM microscopy.This study was supported by FCT under the scope of the strategic funding of UID/BIO/04469/2013 unit and COMPETE 2020 (POCI-01-0145-FEDER-006684) and BioTecNorteoperation (NORTE-01-0145-FEDER-000004) funded by the European Regional Development Fund under the scope of Norte2020 - Programa Operacional Regional do Norte.info:eu-repo/semantics/publishedVersio
Macromolecular Fingerprinting of Sulfolobus Species in Biofilm: A Transcriptomic and Proteomic Approach Combined with Spectroscopic Analysis
Microorganisms in nature often live in surfaceassociated
sessile communities, encased in a self-produced
matrix, referred to as biofilms. Biofilms have been well studied in
bacteria but in a limited way for archaea. We have recently characterized
biofilm formation in three closely related hyperthermophilic
crenarchaeotes: Sulfolobus acidocaldarius, S. solfataricus, and
S. tokodaii. These strains form different communities ranging
from simple carpet structures in S. solfataricus to high density
tower-like structures in S. acidocaldarius under static condition.
Here, we combine spectroscopic, proteomic, and transcriptomic
analyses to describe physiological and regulatory features
associated with biofilms. Spectroscopic analysis reveals that in
comparison to planktonic life-style, biofilm life-style has distinctive
influence on the physiology of each Sulfolobus spp.
Proteomic and transcriptomic data show that biofilm-forming
life-style is strain specific (eg ca. 15% of the S. acidocaldarius
genes were differently expressed, S. solfataricus and S. tokodaii
had ā¼3.4 and ā¼1%, respectively). The -omic data showed that regulated ORFs were widely distributed in basic cellular functions,
including surface modifications. Several regulated genes are common to biofilm-forming cells in all three species. One of the most
striking common response genes include putative Lrs14-like transcriptional regulators, indicating their possible roles as a key
regulatory factor in biofilm development
Biodesalination: A Case Study for Applications of Photosynthetic Bacteria in Water Treatment Ā
Shortage of freshwater is a serious problem in many regions worldwide, and is expected to become even more urgent over the next decades as a result of increased demand for food production and adverse effects of climate change. Vast water resources in the oceans can only be tapped into if sustainable, energy-efficient technologies for desalination are developed. Energization of desalination by sunlight through photosynthetic organisms offers a potential opportunity to exploit biological processes for this purpose. Cyanobacterial cultures in particular can generate a large biomass in brackish and seawater, thereby forming a low-salt reservoir within the saline water. The latter could be used as an ion exchanger through manipulation of transport proteins in the cell membrane. In this article, we use the example of biodesalination as a vehicle to review the availability of tools and methods for the exploitation of cyanobacteria in water biotechnology. Issues discussed relate to strain selection, environmental factors, genetic manipulation, ion transport, cell-water separation, process design, safety, and public acceptance
Methodological approaches for studying the microbial ecology of drinking water distribution systems
The study of the microbial ecology of drinking water distribution systems (DWDS) has traditionally been based on culturing organisms from bulk water samples. The development and application of molecular methods has supplied new tools for examining the microbial diversity and activity of environmental samples, yielding new insights into the microbial community and its diversity within these engineered ecosystems. In this review, the currently available methods and emerging approaches for characterising microbial communities, including both planktonic and biofilm ways of life, are critically evaluated. The study of biofilms is considered particularly important as it plays a critical role in the processes and interactions occurring at the pipe wall and bulk water interface. The advantages, limitations and usefulness of methods that can be used to detect and assess microbial abundance, community composition and function are discussed in a DWDS context. This review will assist hydraulic engineers and microbial ecologists in choosing the most appropriate tools to assess drinking water microbiology and related aspects
- ā¦