3,965 research outputs found
Eliminating Hepatitis C Virus From a Prevalent Kidney Transplant Recipient Population: A Single-Center Study in Belgium in the Direct-Acting Antivirals Era
Background:
Direct-acting antivirals (DAAs) have revolutionized the treatment of hepatitis C virus (HCV) infection. Although previous studies have reported positive results with DAAs after kidney transplantation (KT), their impact on the prevalence of HCV viremia (HCVv) in prevalent kidney transplant recipients (KTRs) remains ill defined.
Methods:
We retrospectively reviewed the HCV status of all patients followed at Cliniques Universitaires Saint-Luc, Brussels, Belgium, outpatient KT clinic between January 2014 and December 2018. We collected the clinical features of KTRs treated with DAAs during this period and calculated the annual prevalence of HCVv over this period.
Results:
Out of 1451 KTRs, 22 (1.52%) had HCVv in 2014 to 2018. From 2014 to 2018, the annual prevalence of HCVv dropped from 1.97% to 0.43%, (P < .001). Fourteen KTRs were treated with DAAs a median of 197 months (range: 5-374) after KT, mostly (79%) in 2017 after reimbursement restrictions of DAAs for KTRs in Belgium were removed. DAA treatment was safe with a sustained virological response rate at 12 weeks after treatment (SVR12) of 93%. Two patients died 14 months (lymphoma, despite SVR12) and 7 months (hepatocarcinoma, no SVR12) after DAAs initiation, respectively. Among HCVv KTRs not treated with DAAs (n = 8), 2 lost their graft, 5 died, and 1 is initiating therapy. The current prevalence of HCVv in the cohort is 0.08%, with a single patient currently on treatment.
Conclusion:
Treatment with DAAs led to a dramatic decrease of HCVv prevalence in this KTR cohort. DAA use was safe and effective. Elimination of HCV is possible at KT clinics
Intermittent Surface Oxygenation Results in Similar Mitochondrial Protection and Maintenance of Aerobic Metabolism as Compared to Continuous Oxygenation during Hypothermic Machine Kidney Machine Perfusion
Short bubble and subsequent surface oxygenation is an innovative oxygenation technique and alternative for membrane oxygenation during hypothermic machine perfusion (HMP). The metabolic effect of the interruption of surface oxygenation for 4 h (mimicking organ transport) during HMP was compared to continuous surface and membrane oxygenation in a pig kidney ex situ preservation model. After 30 min of warm ischemia by vascular clamping, a kidney of a ±40 kg pig was procured and subsequently preserved according to one of the following groups: (1) 22-h HMP + intermittent surface oxygenation ( = 12); (2) 22-h HMP + continuous membrane oxygenation ( = 6); and (3) 22-h HMP + continuous surface oxygenation ( = 7). Brief perfusate O uploading before kidney perfusion was either obtained by direct bubble (groups 1, 3) or by membrane (group 2) oxygenation. Bubble oxygenation during minimum 15 min was as efficient as membrane oxygenation in achieving supraphysiological perfusate pO levels before kidney perfusion. Metabolic tissue analysis (i.e., lactate, succinate, ATP, NADH, and FMN) during and at the end of the preservation period demonstrated similar mitochondrial protection between all study groups. Short bubble and subsequent intermittent surface oxygenation of the perfusate of an HMP-kidney might be an effective and cheap preservation strategy to protect mitochondria, eliminating the need/costs of a membrane oxygenator and oxygen source during transport
First Light Measurements with the XMM-Newton Reflection Grating Spectrometers: Evidence for an Inverse First Ionisation Potential Effect and Anomalous Ne A bundance in the Coronae of HR 1099
The RS CVn binary system HR 1099 was extensively observed by the XMM-Newton
observatory in February 2000 as its first-light target. A total of 570 ks of
exposure time was accumulated with the Reflection Grating Spectrometers (RGS).
The integrated X-ray spectrum between 5-35 Angstrom is of unprecedented quality
and shows numerous features attributed to transitions of the elements C, N, O,
Ne, Mg, Si, S, Fe, and Ni. We perform an in-depth study of the elemental
composition of the average corona of this system, and find that the elemental
abundances strongly depend on the first ionisation potential (FIP) of the
elements. But different from the solar coronal case, we find an inverse FIP
effect, i.e., the abundances (relative to oxygen) increase with increasing FIP.
Possible scenarios, e.g., selective enrichment due to Ne-rich flare-like
events, are discussed.Comment: 5 pages, 4 figures. Accepted by A&A Letters, XMM issu
Growing the Impact of Management Education and Scholarship
Management is not only taught in business schools. For more than 100 years it has also been taught by a special type of university that is âmore than a business schoolâ. An international group of university leaders trace the emergence, role and future contributions of âuniversities for business and management
Revisiting a fundamental test of the disc instability model for X-ray binaries
We revisit a core prediction of the disc instability model (DIM) applied to
X-ray binaries. The model predicts the existence of a critical mass transfer
rate, which depends on disc size, separating transient and persistent systems.
We therefore selected a sample of 52 persistent and transient neutron star and
black hole X-ray binaries and verified if observed persistent (transient)
systems do lie in the appropriate stable (unstable) region of parameter space
predicted by the model. We find that, despite the significant uncertainties
inherent to these kinds of studies, the data are in very good agreement with
the theoretical expectations. We then discuss some individual cases that do not
clearly fit into this main conclusion. Finally, we introduce the transientness
parameter as a measure of the activity of a source and show a clear trend of
the average outburst recurrence time to decrease with transientness in
agreement with the DIM predictions. We therefore conclude that, despite
difficulties in reproducing the complex details of the lightcurves, the DIM
succeeds to explain the global behaviour of X-ray binaries averaged over a long
enough period of time.Comment: 12 pages, 4 figures. Accepted for publication in MNRAS. Version 2:
some typos corrected and references adde
Plant genebanks: present situation and proposals for their improvement. The case of the Spanish Network
[EN] Genebanks were created by the middle of the twentieth century to preserve cultivated biodiversity when landraces began to be substituted by modern varieties. This move was generally accepted as a necessary step to safeguard the future. After about 75 years of collecting and maintaining genetic resources, the increasing ability of biotechnology to create new variability brings the roles of genebanks in the present and near future into question. As a continuation of several workshops that started in 2014, staff of some representative genebanks have met to discuss how the Spanish Plant Genetic Resources Network can be improved, identifying the following major shortcomings: lack of efficient coordination in the distribution of species among genebanks; too many genebanks; existence of detected and undetected duplicates; insufficient rate of regeneration; insufficient phenotyping, genotyping, and epiphenotyping; unsatisfactory rate of use by end users; and, insufficient funding. As a considerable increase in public funding is unlikely, we propose some strategies to increase the efficiency of the system. The most urgent tasks are to strengthen the rationalization of the network by establishing a clear hierarchy and functions, to improve the information in the base collection by deep characterization including not only phenotypes but also uses and utilities, to progressively replace the active collections with focused core collections constructed to meet users' needs, to optimize regeneration protocols, to limit new collecting expeditions of Spanish crop wild relatives to those growing in threatened habitats, and to develop user-friendly platforms to access germplasm documentation, including a unified system of descriptors and classification categories. Current advances in biotechnology, and especially those in gene editing will have without doubt an impact on the role of genebanks. However, the high number of genes and gene combinations created by evolution they hold cannot be produced by these techniques at present. So, these reservoirs of variability will continue to be indispensable for the near-medium future while the function of all the genes is unveiled. In turn, biotechnologies and gene editing will allow us to take advantage of the information held in genebanks in a more efficient and fast way, contributing to a better rationalization and functioning.This work was partially funded Ministerio de Economia y Competitividad and FEDER through projects RFP2015-00008-C4 and RFP2015-00016-00-00.DĂez NiclĂłs, MJTDJ.; De La Rosa, L.; MartĂn, I.; Guasch, L.; Cartea, ME.; Mallor, C.; Casals, J.... (2018). Plant genebanks: present situation and proposals for their improvement. The case of the Spanish Network. Frontiers in Plant Science. 9. https://doi.org/10.3389/fpls.2018.01794S9Ahmed, S., Stepp, J. R., Orians, C., Griffin, T., Matyas, C., Robbat, A., ⊠Kennelly, E. (2014). Effects of Extreme Climate Events on Tea (Camellia sinensis) Functional Quality Validate Indigenous Farmer Knowledge and Sensory Preferences in Tropical China. PLoS ONE, 9(10), e109126. doi:10.1371/journal.pone.0109126Byrne, P. F., Volk, G. M., Gardner, C., Gore, M. A., Simon, P. W., & Smith, S. (2018). Sustaining the Future of Plant Breeding: The Critical Role of the USDAâARS National Plant Germplasm System. Crop Science, 58(2), 451-468. doi:10.2135/cropsci2017.05.0303Villa, T. C. C., Maxted, N., Scholten, M., & Ford-Lloyd, B. (2005). Defining and identifying crop landraces. Plant Genetic Resources, 3(3), 373-384. doi:10.1079/pgr200591Cartea, M. E., Picoaga, A., Soengas, P., & OrdĂĄs, A. (2003). Euphytica, 129(1), 25-32. doi:10.1023/a:1021576005211Casals, J., Casañas, F., & SimĂł, J. (2017). Is It Still Necessary to Continue to Collect Crop Genetic Resources in the Mediterranean Area? A Case Study in Catalonia. Economic Botany, 71(4), 330-341. doi:10.1007/s12231-017-9392-0Casañas, F., SimĂł, J., Casals, J., & Prohens, J. (2017). Toward an Evolved Concept of Landrace. Frontiers in Plant Science, 08. doi:10.3389/fpls.2017.00145Cebolla-Cornejo, J., RosellĂł, S., & Nuez, F. (2013). Phenotypic and genetic diversity of Spanish tomato landraces. Scientia Horticulturae, 162, 150-164. doi:10.1016/j.scienta.2013.07.044Ceccarelli, S., & Grando, S. (1996). Drought as a challenge for the plant breeder. Plant Growth Regulation, 20(2), 149-155. doi:10.1007/bf00024011Chapman, S. C., Chakraborty, S., Dreccer, M. F., & Howden, S. M. (2012). Plant adaptation to climate changeâopportunities and priorities in breeding. Crop and Pasture Science, 63(3), 251. doi:10.1071/cp11303Clawson, D. L. (1985). Harvest Security and Intraspecific Diversity in Traditional Tropical Agriculture. Economic Botany, 39(1), 56-67. doi:10.1007/bf02861175Li, D.-Z., & Pritchard, H. W. (2009). The science and economics of ex situ plant conservation. Trends in Plant Science, 14(11), 614-621. doi:10.1016/j.tplants.2009.09.005Gepts, P. (2006). Plant Genetic Resources Conservation and Utilization: The Accomplishments and Future of a Societal Insurance Policy. Crop Science, 46(5), 2278-2292. doi:10.2135/cropsci2006.03.0169gasGĂłmez, O. J., Blair, M. W., Frankow-Lindberg, B. E., & Gullberg, U. (2005). Comparative Study of Common Bean ( Phaseolus vulgarisL.) Landraces Conserved ex situ in Genebanks and in situ by Farmers. Genetic Resources and Crop Evolution, 52(4), 371-380. doi:10.1007/s10722-005-2249-xHajjar, R., & Hodgkin, T. (2007). The use of wild relatives in crop improvement: a survey of developments over the last 20 years. Euphytica, 156(1-2), 1-13. doi:10.1007/s10681-007-9363-0Halewood, M., Chiurugwi, T., Sackville Hamilton, R., Kurtz, B., Marden, E., Welch, E., ⊠Powell, W. (2018). Plant genetic resources for food and agriculture: opportunities and challenges emerging from the science and information technology revolution. New Phytologist, 217(4), 1407-1419. doi:10.1111/nph.14993Jarvis, D. I., Hodgkin, T., Sthapit, B. R., Fadda, C., & Lopez-Noriega, I. (2011). An Heuristic Framework for Identifying Multiple Ways of Supporting the Conservation and Use of Traditional Crop Varieties within the Agricultural Production System. Critical Reviews in Plant Sciences, 30(1-2), 125-176. doi:10.1080/07352689.2011.554358Khoury, C. K., Achicanoy, H. A., Bjorkman, A. D., Navarro-Racines, C., Guarino, L., Flores-Palacios, X., ⊠Struik, P. C. (2016). Origins of food crops connect countries worldwide. Proceedings of the Royal Society B: Biological Sciences, 283(1832), 20160792. doi:10.1098/rspb.2016.0792Khoury, C. K., Bjorkman, A. D., Dempewolf, H., Ramirez-Villegas, J., Guarino, L., Jarvis, A., ⊠Struik, P. C. (2014). Increasing homogeneity in global food supplies and the implications for food security. Proceedings of the National Academy of Sciences, 111(11), 4001-4006. doi:10.1073/pnas.1313490111Maxted, N., Scholten, M., Codd, R., & Ford-Lloyd, B. (2007). Creation and use of a national inventory of crop wild relatives. Biological Conservation, 140(1-2), 142-159. doi:10.1016/j.biocon.2007.08.006McCouch, S., Baute, G. J., Bradeen, J., Bramel, P., Bretting, P. K., Buckler, E., ⊠Zamir, D. (2013). Feeding the future. Nature, 499(7456), 23-24. doi:10.1038/499023aMcCouch, S. R., McNally, K. L., Wang, W., & Sackville Hamilton, R. (2012). Genomics of gene banks: A case study in rice. American Journal of Botany, 99(2), 407-423. doi:10.3732/ajb.1100385McFerson, J. R., Lamboy, W. F., & Kresovich, S. (1996). Assessing User Perceptions of Genetic Resource Collections in Crucifer Crops. Crop Science, 36(4), 831-838. doi:10.2135/cropsci1996.0011183x003600040001xMeyer, R. S. (2015). Encouraging metadata curation in the Diversity Seek initiative. Nature Plants, 1(7). doi:10.1038/nplants.2015.99Negri, V., & Tiranti, B. (2010). Effectiveness of in situ and ex situ conservation of crop diversity. What a Phaseolus vulgaris L. landrace case study can tell us. Genetica, 138(9-10), 985-998. doi:10.1007/s10709-010-9485-5Olesen, J. E., & Bindi, M. (2002). Consequences of climate change for European agricultural productivity, land use and policy. European Journal of Agronomy, 16(4), 239-262. doi:10.1016/s1161-0301(02)00004-7Prada, D. (2009). Molecular population genetics and agronomic alleles in seed banks: searching for a needle in a haystack? Journal of Experimental Botany, 60(9), 2541-2552. doi:10.1093/jxb/erp130Reif, J. C., Melchinger, A. E., & Frisch, M. (2005). Genetical and Mathematical Properties of Similarity and Dissimilarity Coefficients Applied in Plant Breeding and Seed Bank Management. Crop Science, 45(1), cropsci2005.0001. doi:10.2135/cropsci2005.0001Rubio Teso, M. L., Torres Lamas, E., Parra-Quijano, M., de la Rosa, L., Fajardo, J., & Iriondo, J. M. (2018). National inventory and prioritization of crop wild relatives in Spain. Genetic Resources and Crop Evolution, 65(4), 1237-1253. doi:10.1007/s10722-018-0610-0Santalla, M., Rodiño, A., & De Ron, A. (2002). Allozyme evidence supporting southwestern Europe as a secondary center of genetic diversity for the common bean. Theoretical and Applied Genetics, 104(6), 934-944. doi:10.1007/s00122-001-0844-6Schreinemachers, P., Ebert, A. W., & Wu, M.-H. (2014). Costing the ex situ conservation of plant genetic resources at AVRDC â The World Vegetable Center. Genetic Resources and Crop Evolution, 61(4), 757-773. doi:10.1007/s10722-013-0070-5Soengas, P., Cartea, M. E., Velasco, P., Padilla, G., & OrdĂĄs, A. (2008). Morphologic and Agronomic Diversity of Brassica napus Crops. Journal of the American Society for Horticultural Science, 133(1), 48-54. doi:10.21273/jashs.133.1.48Tanksley, S. D., & McCouch, S. R. (1997). Seed Banks and Molecular Maps: Unlocking Genetic Potential from the Wild. Science, 277(5329), 1063-1066. doi:10.1126/science.277.5329.1063Van de Wouw, M., Kik, C., van Hintum, T., van Treuren, R., & Visser, B. (2009). Genetic erosion in crops: concept, research results and challenges. Plant Genetic Resources, 8(1), 1-15. doi:10.1017/s1479262109990062Van Treuren, R., & van Hintum, T. J. L. (2014). Next-generation genebanking: plant genetic resources management and utilization in the sequencing era. Plant Genetic Resources, 12(3), 298-307. doi:10.1017/s1479262114000082Wambugu, P. W., Ndjiondjop, M.-N., & Henry, R. J. (2018). Role of genomics in promoting the utilization of plant genetic resources in genebanks. Briefings in Functional Genomics, 17(3), 198-206. doi:10.1093/bfgp/ely014Zamir, D. (2013). Where Have All the Crop Phenotypes Gone? PLoS Biology, 11(6), e1001595. doi:10.1371/journal.pbio.1001595Zeven, A. C. (1998). Euphytica, 104(2), 127-139. doi:10.1023/a:101868311923
A global database for metacommunity ecology, integrating species, traits, environment and space
The use of functional information in the form of species traits plays an important role in explaining biodiversity patterns and responses to environmental changes. Although relationships between species composition, their traits, and the environment have been extensively studied on a case-by-case basis, results are variable, and it remains unclear how generalizable these relationships are across ecosystems, taxa and spatial scales. To address this gap, we collated 80 datasets from trait-based studies into a global database for metaCommunity Ecology: Species, Traits, Environment and Space; âCESTESâ. Each dataset includes four matrices: species community abundances or presences/absences across multiple sites, species trait information, environmental variables and spatial coordinates of the sampling sites. The CESTES database is a live database: it will be maintained and expanded in the future as new datasets become available. By its harmonized structure, and the diversity of ecosystem types, taxonomic groups, and spatial scales it covers, the CESTES database provides an important opportunity for synthetic trait-based research in community ecology
Association of Bevacizumab Plus Oxaliplatin-Based Chemotherapy With Disease-Free Survival and Overall Survival in Patients With Stage II Colon Cancer A Secondary Analysis of the AVANT Trial
IMPORTANCE: In the pivotal Bevacizumab-Avastin Adjuvant (AVANT) trial, patients with high-risk stage II colon cancer (CC) had 5-year and 10-year overall survival (OS) rates of 88% and 75%, respectively, with adjuvant fluorouracil and oxaliplatin-based chemotherapy; however, the trial did not demonstrate a disease-free survival (DFS) benefit of adding bevacizumab to oxaliplatin-based chemotherapy in stage III CC and suggested a detrimental effect on OS. The Long-term Survival AVANT (S-AVANT) study was designed to collect extended follow-up for patients in the AVANT trial. OBJECTIVE: To explore the efficacy of adjuvant bevacizumab combined with oxaliplatin-based chemotherapy in patients with high-risk, stage II CC. DESIGN, SETTING, AND PARTICIPANTS: This prespecified secondary end point analysis of the AVANT and S-AVANT studies included 573 patients with curatively resected high-risk stage II CC and at least 1 of the following criteria: stage T4, bowel obstruction or perforation, blood and/or lymphatic vascular invasion and/or perineural invasion, age younger than 50 years, or fewer than 12 nodes analyzed. The AVANT study was a multicenter randomized stage 3 clinical trial. Data were collected from December 2004 to February 2019, and data for this study were analyzed from March to September 2019. INTERVENTION: Patients were randomly assigned to receive 5-fluorouracil, leucovorin, and oxaliplatin (FOLFOX4), FOLFOX4 with bevacizumab, or capecitabine and oxaliplatin (XELOX) with bevacizumab. MAIN OUTCOMES AND MEASURES The primary end points of this secondary analysis were DFS and OS in patients with high-risk stage II CC. RESULTS The AVANT study included 3451 patients, of whom 573 (16.6%) had high-risk stage II CC (192 [33.5%] randomized to FOLFOX4 group; 194 [33.9%] randomized to FOLFOX4 with bevacizumab group; 187 [32.6%] randomized to XELOX with bevacizumab group). With a median (interquartile range) age of 57.0 (47.2-65.7) years, the study population comprised 325 men (56.7%) and 248 women (43.3%). After a median (interquartile range) follow-up of 6.9 (6.1-11.3) years, the 3-year DFS and 5-year OS rates were 88.2% (95% CI, 83.7%-93.0%) and 89.7% (95% CI, 85.4%-94.2%) in the FOLFOX4 group, 86.6% (95% CI, 81.8%-91.6%) and 89.7% (95% CI, 85.4%-94.2%) in the FOLFOX4 with bevacizumab group, and 86.7% (95% CI, 81.8%-91.8%) and 93.2% (95% CI, 89.6%-97.0%) in the XELOX with bevacizumab group, respectively. The DFS hazard ratio was 0.94 (95% CI, 0.59-1.48; P = .78) for FOLFOX4 with bevacizumab vs FOLFOX4 and 1.07 (95% CI, 0.69-1.67; P = .76) for XELOX with bevacizumab vs FOLFOX4. The OS hazard ratio was 0.92 (95% CI, 0.55-1.55; P = .76) for FOLFOX4 with bevacizumab vs FOLFOX4 and 0.85 (95% CI, 0.50-1.44; P = .55) for XELOX with bevacizumab vs FOLFOX4. CONCLUSIONS AND RELEVANCE: In this secondary analysis of data from the AVANT trial, adding bevacizumab to oxaliplatin-based chemotherapy was not associated with longer DFS or OS in patients with high-risk stage II CC. The findings suggest that the definition of high-risk stage II CC needs to be revisited
A search for the decay modes B+/- to h+/- tau l
We present a search for the lepton flavor violating decay modes B+/- to h+/-
tau l (h= K,pi; l= e,mu) using the BaBar data sample, which corresponds to 472
million BBbar pairs. The search uses events where one B meson is fully
reconstructed in one of several hadronic final states. Using the momenta of the
reconstructed B, h, and l candidates, we are able to fully determine the tau
four-momentum. The resulting tau candidate mass is our main discriminant
against combinatorial background. We see no evidence for B+/- to h+/- tau l
decays and set a 90% confidence level upper limit on each branching fraction at
the level of a few times 10^-5.Comment: 15 pages, 7 figures, submitted to Phys. Rev.
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