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Astrocyte Unfolded Protein Response Induces a Specific Reactivity State that Causes Non-Cell-Autonomous Neuronal Degeneration.
- Author
- Publication venue
- Neuron
- Publication date
- 04/03/2020
- Field of study
Recent interest in astrocyte activation states has raised the fundamental question of how these cells, normally essential for synapse and neuronal maintenance, become pathogenic. Here, we show that activation of the unfolded protein response (UPR), specifically phosphorylated protein kinase R-like endoplasmic reticulum (ER) kinase (PERK-P) signaling-a pathway that is widely dysregulated in neurodegenerative diseases-generates a distinct reactivity state in astrocytes that alters the astrocytic secretome, leading to loss of synaptogenic function in vitro. Further, we establish that the same PERK-P-dependent astrocyte reactivity state is harmful to neurons in vivo in mice with prion neurodegeneration. Critically, targeting this signaling exclusively in astrocytes during prion disease is alone sufficient to prevent neuronal loss and significantly prolongs survival. Thus, the astrocyte reactivity state resulting from UPR over-activation is a distinct pathogenic mechanism that can by itself be effectively targeted for neuroprotection
Guidelines for the use and interpretation of assays for monitoring autophagy
- Author
- Abdalla Fabio C.
- Abeliovich Hagai
- Abraham Robert T.
- Acevedo-Arozena Abraham
- Adeli Khosrow
- Agholme Lotta
- Agnello Maria
- Agostinis Patrizia
- Aguirre-Ghiso Julio A.
- Ahn Hyung Jun
- Ait-Mohamed Ouardia
- Ait-Si-Ali Slimane
- Akematsu Takahiko
- Akira Shizuo
- Al-Younes Hesham M.
- Al-Zeer Munir A.
- Albert Matthew L.
- Albin Roger L.
- Alegre-Abarrategui Javier
- Aleo Maria Francesca
- Alirezaei Mehrdad
- Almasan Alexandru
- Almonte-Becerril Maylin
- Amano Atsuo
- Amaravadi Ravi K.
- Amarnath Shoba
- Amer Amal O.
- Anantharam Vellareddy
- Andrieu-Abadie Nathalie
- Ann David K.
- Anoopkumar-Dukie Shailendra
- Aoki Hiroshi
- Apostolova Nadezda
- Arancia Giuseppe
- Aris John P.
- Asanuma Katsuhiko
- Asare Nana Y.O.
- Ashida Hisashi
- Askanas Valerie
- Askew David S
- Auberger Patrick
- Baba Misuzu
- Backues Steven K.
- Baehrecke Eric H.
- Bahr Ben A.
- Bai Xue-Yuan
- Bailly Yannick
- Baiocchi Robert
- Baldini Giulia
- Balduini Walter
- Ballabio Andrea
- Bamber Bruce A.
- Bampton Edward T.W.
- Bartholomew Clinton R.
- Bassham Diane C.
- Bast Robert C.
- Batoko Henri
- Bay Boon-Huat
- Beau Isabelle
- Begley Thomas J.
- Behl Christian
- Behrends Christian
- Bekri Soumeya
- Bellaire Bryan
- Bendall Linda J.
- Benetti Luca
- Berliocchi Laura
- Bernardi Henri
- Bernassola Francesca
- Besteiro Sébastien
- Bhatia-Kiššová Ingrid
- Bi Xiaoning
- Biard-Piechaczyk Martine
- Blum Janice S.
- Boise Lawrence H.
- Bonaldo Paolo
- Boone David L
- Bornhauser Beat C.
- Bortoluci Karina R.
- Bossis Ioannis
- Bost Frédéric
- Bourquin Jean-Pierre
- Boya Patricia
- Boyer-Guittaut Michaël
- Bozhkov Peter V.
- Brady Nathan R
- Brancolini Claudio
- Brech Andreas
- Brenman Jay E.
- Brennand Ana
- Bresnick Emery H.
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- Bridges Dave
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- Brookes Paul S.
- Brown Eric J.
- Brumell John H.
- Brunetti-Pierri Nicola
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- Bulman Dennis E.
- Bultman Scott J.
- Bultynck Geert
- Burbulla Lena F.
- Bursch Wilfried
- Butchar Jonathan P.
- Buzgariu Wanda
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- Cadwell Ken
- Cahová Monika
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- Candi Eleonora
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- Carmignac Virginie
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- Casari Giorgio
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- Chaachouay Hassan
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- Chan Edmond Y.
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- Chen Guang-Chao
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- Chen WenLi
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- Chen Xiangmei
- Chen Xiequn
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- Chen Yongqiang
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- Cheng Alan
- Cheng Christopher H.K.
- Cheng Yan
- Cheong Heesun
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- Cherry Sara
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- Yao Meng-Chao
- Yao Tso-Pang
- Yeganeh Behzad
- Yen Wei-Lien
- Yin Jia-jing
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- Zacks David
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- Zeitlin Scott O.
- Zhang Hong
- Zhang Hui-Ling
- Zhang Jianhua
- Zhang Jing-Pu
- Zhang Jue
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- Zhang Xu Dong
- Zhao Mantong
- Zhao Yi-Fang
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- Zheng Xiaoxiang
- Zhivotovsky Boris
- Zhong Qing
- Zhou Cong-Zhao
- Zhu Changlian
- Zhu Wei-Guo
- Zhu Xiao-Feng
- Zhu Xiongwei
- Zhu Yuangang
- Zoladek Teresa
- Zong Wei-Xing
- Zorzano Antonio
- Zschocke Jürgen
- Zuckerbraun Brian
- Publication venue
- Publication date
- 01/04/2012
- Field of study
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field
Guidelines for the use and interpretation of assays for monitoring autophagy
- Author
- Abdalla Fabio C.
- Abeliovich Hagai
- Abraham Robert T.
- Acevedo-Arozena Abraham
- Adeli Khosrow
- Agholme Lotta
- Agnello Maria
- Agostinis Patrizia
- Aguirre-Ghiso Julio A.
- Ahn Hyung Jun
- Ait-Mohamed Ouardia
- Ait-Si-Ali Slimane
- Akematsu Takahiko
- Akira Shizuo
- Al-Younes Hesham M.
- Al-Zeer Munir A.
- Albert Matthew L.
- Albin Roger L.
- Alegre-Abarrategui Javier
- Aleo Maria Francesca
- Alirezaei Mehrdad
- Almasan Alexandru
- Almonte-Becerril Maylin
- Amano Atsuo
- Amaravadi Ravi K.
- Amarnath Shoba
- Amer Amal O.
- Anantharam Vellareddy
- Andrieu-Abadie Nathalie
- Ann David K.
- Anoopkumar-Dukie Shailendra
- Aoki Hiroshi
- Apostolova Nadezda
- Arancia Giuseppe
- Aris John P.
- Asanuma Katsuhiko
- Asare Nana Y.O.
- Ashida Hisashi
- Askanas Valerie
- Askew David S
- Auberger Patrick
- Baba Misuzu
- Backues Steven K.
- Baehrecke Eric H.
- Bahr Ben A.
- Bai Xue-Yuan
- Bailly Yannick
- Baiocchi Robert
- Baldini Giulia
- Balduini Walter
- Ballabio Andrea
- Bamber Bruce A.
- Bampton Edward T.W.
- Bartholomew Clinton R.
- Bassham Diane C.
- Bast Robert C.
- Batoko Henri
- Bay Boon-Huat
- Beau Isabelle
- Begley Thomas J.
- Behl Christian
- Behrends Christian
- Bekri Soumeya
- Bellaire Bryan
- Bendall Linda J.
- Benetti Luca
- Berliocchi Laura
- Bernardi Henri
- Bernassola Francesca
- Besteiro Sébastien
- Bhatia-Kiššová Ingrid
- Bi Xiaoning
- Biard-Piechaczyk Martine
- Blum Janice S.
- Boise Lawrence H.
- Bonaldo Paolo
- Boone David L
- Bornhauser Beat C.
- Bortoluci Karina R.
- Bossis Ioannis
- Bost Frédéric
- Bourquin Jean-Pierre
- Boya Patricia
- Boyer-Guittaut Michaël
- Bozhkov Peter V.
- Brady Nathan R
- Brancolini Claudio
- Brech Andreas
- Brenman Jay E.
- Brennand Ana
- Bresnick Emery H.
- Brest Patrick
- Bridges Dave
- Bristol Molly L.
- Brookes Paul S.
- Brown Eric J.
- Brumell John H.
- Brunetti-Pierri Nicola
- Brunk Ulf T.
- Bulman Dennis E.
- Bultman Scott J.
- Bultynck Geert
- Burbulla Lena F.
- Bursch Wilfried
- Butchar Jonathan P.
- Buzgariu Wanda
- Bydlowski Sergio P.
- Béchet Daniel M.
- Cadwell Ken
- Cahová Monika
- Cai Dongsheng
- Cai Jiyang
- Cai Qian
- Calabretta Bruno
- Calvo-Garrido Javier
- Camougrand Nadine
- Campanella Michelangelo
- Campos-Salinas Jenny
- Candi Eleonora
- Cao Lizhi
- Caplan Allan B.
- Carding Simon R.
- Cardoso Sandra M.
- Carew Jennifer S.
- Carlin Cathleen R.
- Carmignac Virginie
- Carneiro Leticia A.M.
- Carra Serena
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- Casari Giorgio
- Casas Caty
- Castino Roberta
- Cebollero Eduardo
- Cecconi Francesco
- Celli Jean
- Chaachouay Hassan
- Chae Han-Jung
- Chai Chee-Yin
- Chan David C.
- Chan Edmond Y.
- Chang Raymond Chuen-Chung
- Che Chi-Ming
- Chen Ching-Chow
- Chen Guang-Chao
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- Chen Steve S.-L.
- Chen WenLi
- Chen Xi
- Chen Xiangmei
- Chen Xiequn
- Chen Ye-Guang
- Chen Yingyu
- Chen Yongqiang
- Chen Yu-Jen
- Chen Zhixiang
- Cheng Alan
- Cheng Christopher H.K.
- Cheng Yan
- Cheong Heesun
- Cheong Jae-Ho
- Cherry Sara
- Chess-Williams Russ
- Cheung Zelda H.
- Chevet Eric
- Chiang Hui-Ling
- Chiarelli Roberto
- Chiba Tomoki
- Chin Lih-Shen
- Chiou Shih-Hwa
- Chisari Francis V.
- Cho Chi Hin
- Cho Dong-Hyung
- Choi Augustine MK
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- Choi Kyeong Sook
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- Choubey Vinay
- Chu Charleen T
- Chuang Tsung-Hsien
- Chueh Sheau-Huei
- Chun Taehoon
- Chwae Yong-Joon
- Chye Mee-Len
- Ciarcia Roberto
- Ciriolo Maria R.
- Clague Michael J.
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- Clarke Peter G.H.
- Clarke Robert B
- Codogno Patrice
- Coller Hilary A.
- Colombo María I.
- Comincini Sergio
- Condello Maria
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- Coppens Isabelle
- Corbalan Ramon
- Cossart Pascale
- Costelli Paola
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- Coto-Montes Ana
- Couve Eduardo
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- Cronjé Marianne J.
- Cuervo Ana Maria
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- De Martino Luisa
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- Debnath Jayanta
- Degterev Alexei
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- Demarchi Francesca
- Deng Yi Zhen
- Dengjel Jörn
- Dent Paul
- Denton Donna
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- Di Gioacchino Mario
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- Diaz-Meco Maria T.
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- Dikic Ivan
- Dinesh-Kumar Savithramma P.
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- Distelhorst Clark W.
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- Ellerby Lisa M.
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- Escalante Ricardo
- Esclatine Audrey
- Eskelinen Eeva-Liisa
- Espert Lucile
- Espina Virginia
- Fan Huizhou
- Fan Jia
- Fan Qi-Wen
- Fan Zhen
- Fang Shengyun
- Fang Yongqi
- Fanto Manolis
- Fanzani Alessandro
- Farkas Thomas
- Farre Jean-Claude
- Faure Mathias
- Fechheimer Marcus
- Feng Carl G.
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- Feng Qili
- Feng Youji
- Feuer Ralph
- Figueiredo-Pereira Maria E.
- Fimia Gian Maria
- Fingar Diane C.
- Finkbeiner Steven
- Finkel Toren
- Finley Kim D.
- Fiorito Filomena
- Fisher Edward A.
- Fisher Paul B.
- Flajolet Marc
- Flores Juan B. Kouri
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- Florio Salvatore
- Fon Edward A
- Fornai Francesco
- Fortunato Franco
- Fotedar Rati
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- Franco Rodrigo
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- Fransen Marc
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- Fueyo Juan
- Fujii Jun
- Fujisaki Kozo
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- Furukawa Ruth H.
- Fésüs László
- Gaestel Matthias
- Gailly Philippe
- Gajewska Malgorzata
- Galliot Brigitte
- Galy Vincent
- Ganesh Subramaniam
- Ganetzky Barry
- Ganley Ian G.
- Gao Fen-Biao
- Gao George F.
- Gao Jinming
- Garcia Lorena
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- Garcia-Marcos Mikel
- Garmyn Marjan
- Gartel Andrei L.
- Gatti Evelina
- Gautel Mathias
- Gawriluk Thomas R.
- Gegg Matthew E.
- Geng Jiefei
- Germain Marc
- Gestwicki Jason E.
- Gewirtz David A
- Ghavami Saeid
- Ghosh Pradipta
- Giammarioli Anna M.
- Giatromanolaki Alexandra N.
- Gibson Spencer B.
- Gilkerson Robert W.
- Ginger Michael L.
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- Golab Jakub
- Goligorsky Michael S.
- Golstein Pierre
- Gomez-Manzano Candelaria
- Goncu Ebru
- Gongora Céline
- Gonzalez Claudio D.
- Gonzalez Ramon
- Gonzalez-Rey Elena
- González-Estévez Cristina
- González-Polo Rosa Ana
- Gorbunov Nikolai V.
- Gorski Sharon
- Goruppi Sandro
- Gottlieb Roberta A
- Gozuacik Devrim
- Granato Giovanna Elvira
- Grant Gary D.
- Green Kim N.
- Gregorc Ales
- Gros Frédéric
- Grose Charles
- Grunt Thomas W.
- Gual Philippe
- Guan Jun-Lin
- Guan Kun-Liang
- Guichard Sylvie M.
- Gukovskaya Anna S.
- Gukovsky Ilya
- Gunst Jan
- Gustafsson Åsa B.
- Halayko Andrew J.
- Hale Amber N.
- Halonen Sandra K.
- Hamasaki Maho
- Han Feng
- Han Ting
- Hancock Michael K.
- Hansen Malene
- Harada Hisashi
- Harada Masaru
- Hardt Stefan E.
- Harper J. Wade
- Harris Adrian L.
- Harris James
- Harris Steven D.
- Hashimoto Makoto
- Haspel Jeffrey A.
- Hayashi Shin-ichiro
- Hazelhurst Lori A.
- He Congcong
- He You-Wen
- Heidenreich Kim A.
- Helfrich Miep H.
- Helgason Gudmundur V.
- Henske Elizabeth P.
- Herman Brian
- Herman Paul K.
- Hetz Claudio
- Hilfiker Sabine
- Hill Joseph A
- Hocking Lynne J.
- Hofman Paul
- Hofmann Thomas G.
- Holyoake Tessa L.
- Hong Ming-Huang
- Hood David A.
- Hotamisligil Gökhan S.
- Houwerzijl Ewout J.
- Hu Bingren
- Hu Chien-an A.
- Hu Hong-Ming
- Hua Ya
- Huang Canhua
- Huang Ju
- Huang Shengbing
- Huang Wei-Pang
- Huber Tobias B.
- Huh Won-Ki
- Hung Tai-Ho
- Hupp Ted R.
- Hur Gang Min
- Hurley James B.
- Hussain Sabah N.A.
- Hussey Patrick J.
- Hwang Jung Jin
- Hwang Seungmin
- Hébert Marie-Josée
- Höhfeld Jörg
- Høyer-Hansen Maria
- Ichihara Atsuhiro
- Ilkhanizadeh Shirin
- Inoki Ken
- Into Takeshi
- Iovane Valentina
- Iovanna Juan L.
- Ip Nancy Y.
- Isaka Yoshitaka
- Ishida Hiroyuki
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- Isobe Ken-ichi
- Iwasaki Akiko
- Izquierdo Marta
- Izumi Yotaro
- Jaakkola Panu M.
- Jackson George R.
- Jackson William T.
- Janji Bassam
- Jendrach Marina
- Jeon Ju-Hong
- Jeung Eui-Bae
- Jiang Hong
- Jiang Hongchi
- Jiang Jean X.
- Jiang Ming
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- Jiang Xuejun
- Jiménez Alberto
- Jin Meiyan
- Jin Shengkan V.
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- Johansen Terje
- Johnson Daniel E.
- Johnson Gail V.W.
- Jones Nicola L.
- Joseph Bertrand
- Joseph Suresh K.
- Joubert Annie M.
- Juhász Gábor
- Juillerat-Jeanneret Lucienne
- Jung Chang Hwa
- Jung Yong-Keun
- Jäättelä Marja
- Kaarniranta Kai
- Kaasik Allen
- Kabuta Tomohiro
- Kadowaki Motoni
- Kamada Yoshiaki
- Kaminskyy Vitaliy O.
- Kampinga Harm H.
- Kanamori Hiromitsu
- Kang Chanhee
- Kang Khong Bee
- Kang Kwang Il
- Kang Rui
- Kang Yoon-A
- Kanki Tomotake
- Kanneganti Thirumala-Devi
- Kanno Haruo
- Kanthasamy Anumantha G.
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- Karantza Vassiliki
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- Kelekar Ameeta
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- Khalil Hany
- Kiel Jan A.K.W.
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- Kihara Akio
- Kim Deok Ryong
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- Kim Dong-Hou
- Kim Eun-Kyoung
- Kim Hyung-Ryong
- Kim Jae-Sung
- Kim Jeong Hun
- Kim Jin Cheon
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- Kim Peter K.
- Kim Seong Who
- Kim Yong-Sun
- Kim Yonghyun
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- Kimmelman Alec C.
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- Kong Hee Jeong
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- Kotake Yaichiro
- Koukourakis Michael I.
- Kovács Attila L
- Kraft Claudine
- Krainc Dimitri
- Kretz-Remy Carole
- Krichevsky Anna M.
- Kroemer Guido
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- Krüger Rejko
- Ktistakis Nicholas T.
- Kuan Chia-Yi
- Kucharczyk Roza
- Kumar Ashok
- Kumar Raj
- Kumar Sharad
- Kundu Mondira
- Kung Hsing-Jien
- Kurz Tino
- Kwon Ho Jeong
- Kågedal Katarina
- La Spada Albert R.
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- Lamark Trond
- Landry Jacques
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- Laporte Jocelyn F.
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- Legouis Renaud
- Lehmann Michael
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- Wu Dao-Cheng
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- Xiao Gengfu
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- Xu Da-zhi
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- Yamamoto Ai
- Yamamoto Akitsugu
- Yamashina Shunhei
- Yamashita Michiaki
- Yan Xianghua
- Yanagida Mitsuhiro
- Yang Dun-Sheng
- Yang Elizabeth
- Yang Jin-Ming
- Yang Shi Yu
- Yang Wannian
- Yang Wei Yuan
- Yang Zhifen
- Yao Meng-Chao
- Yao Tso-Pang
- Yeganeh Behzad
- Yen Wei-Lien
- Yin Jia-jing
- Yin Xiao-Ming
- Yoo Ook-Joon
- Yoon Gyesoon
- Yoon Seung-Yong
- Yorimitsu Tomohiro
- Yoshikawa Yuko
- Yoshimori Tamotsu
- Yoshimoto Kohki
- You Ho Jin
- Youle Richard J
- Younes Anas
- Yu Li
- Yu Long
- Yu Seong-Woon
- Yu Wai Haung
- Yuan Zhi-Min
- Yue Zhenyu
- Yun Cheol-Heui
- Yuzaki Michisuke
- Zabirnyk Olga
- Zacks David
- Zacksenhaus Eldad
- Zaffaroni Nadia
- Zakeri Zahra
- Zeh III Herbert J.
- Zeitlin Scott O.
- Zhang Hong
- Zhang Hui-Ling
- Zhang Jianhua
- Zhang Jing-Pu
- Zhang Jue
- Zhang Lin
- Zhang Long
- Zhang Ming-Yong
- Zhang Xu Dong
- Zhao Mantong
- Zhao Yi-Fang
- Zhao Ying
- Zhao Zhizhuang J.
- Zheng Xiaoxiang
- Zhivotovsky Boris
- Zhong Qing
- Zhou Cong-Zhao
- Zhu Changlian
- Zhu Wei-Guo
- Zhu Xiao-Feng
- Zhu Xiongwei
- Zhu Yuangang
- Zoladek Teresa
- Zong Wei-Xing
- Zorzano Antonio
- Zschocke Jürgen
- Zuckerbraun Brian
- Publication venue
- Publication date
- 01/04/2012
- Field of study
Guidelines for the use and interpretation of assays for monitoring autophagy
- Author
- Abdelhaq Rami
- Abhinav Diwan
- Abraham Acevedo-Arozena
- Adalberto Merighi
- Adi Kimchi
- Adrian L. Harris
- Agnieszka Sirko
- Ahlberg J
- Ai Yamamoto
- Aimable Nahimana
- Aimee L. Edinger
- Aimin Wang
- Akiko Iwasaki
- Akio Kihara
- Akitsugu Yamamoto
- Aksam EB
- Alan Cheng
- Albert R. La Spada
- Alberto Jiménez
- Alec C. Kimmelman
- Ales Gregorc
- Alessandro Fanzani
- Alexander J. Whitworth
- Alexandra N. Giatromanolaki
- Alexandru Almasan
- Alexei Degterev
- Alexei Terman
- Alfred J. Meijer
- Alicia Meléndez
- Alison Simmons
- Allan B. Caplan
- Allan Tsung
- Allen Kaasik
- Alvin J.X. Lee
- Amal O. Amer
- Amber N. Hale
- Ameeta Kelekar
- Amy A. Kiger
- Ana Brennand
- Ana Coto-Montes
- Ana Maria Cuervo
- Ana Milojkovic
- Anas Younes
- Anastasis Stephanou
- Anders H. Lund
- Andrea Ballabio
- Andreas Brech
- Andreas Mayer
- Andreas S. Reichert
- Andreas Wyttenbach
- Andrei L. Gartel
- Andrew J. Halayko
- Andrew Lieberman
- Andrew Thorburn
- Andriy A. Sibirny
- Andriy Nemchenko
- Angelika A. Noegel
- Angelo De Milito
- Angelo Poletti
- Anil K. Sood
- Anil Prasad
- Ann Progulske-Fox
- Anna Katharina Simon
- Anna M. Giammarioli
- Anna M. Krichevsky
- Anna Nogalska
- Anna S. Gukovskaya
- Anna-Mart Engelbrecht
- Anne Régnier-Vigouroux
- Anne Simonsen
- Annie M. Joubert
- Anthony H.V. Schapira
- Anthony M.J. Sanchez
- Antoinette Lemoine
- Antonio Musarò
- Antonio Piras
- Antonio Zorzano
- Anumantha G. Kanthasamy
- Arlette Darfeuille-Michaud
- Arthi Kanthasamy
- Ashok Kumar
- Assaf Rudich
- Atsuhiro Ichihara
- Atsuo Amano
- Attila L. Kovács
- Audrey Esclatine
- Augustine M.K. Choi
- Ausra Sasnauskiene
- Aviva M. Tolkovsky
- Baharia Mograbi
- Bakhos A. Tannous
- Barry Ganetzky
- Bassam Janji
- Beat C. Bornhauser
- Beat Nyfeler
- Beata Sikorska
- Behzad Yeganeh
- Ben A. Bahr
- Ben C.B. Ko
- Benjamin Dehay
- Benjamin Loos
- Berger B
- Bertrand Joseph
- Bertrand Mollereau
- Beth Levine
- BethAnn McLaughlin
- Biederbick A
- Binfeng Lu
- Bingren Hu
- Bingwei Lu
- Biolo G
- Birmingham CL
- Birmingham CL
- Björn Stork
- Bjørkøy G
- Bo Liu
- Bo Lu
- Boon-Huat Bay
- Boris Turk
- Boris Zhivotovsky
- Bradly G. Wouters
- Brian Herman
- Brian P. Rubin
- Brian Zuckerbraun
- Brigitte Galliot
- Brinda Ravikumar
- Brown CR
- Bruce A. Bamber
- Bruce H. Reed
- Bruno Calabretta
- Bryan Bellaire
- Bulent Ozpolat
- Byung-Wan Lee
- Bärbel Rohrer
- Bélanger M
- Cam Patterson
- Camilla Palumbo
- Camille Martinand-Mari
- Candelaria Gomez-Manzano
- Canhua Huang
- Cantino D
- Carine Michiels
- Carl G. Feng
- Carlos López-Otín
- Carlos S. Subauste
- Carmine Settembre
- Carol A. Mercer
- Carole Kretz-Remy
- Caroline A. Whitehouse
- Catherine McDermott
- Cathleen R. Carlin
- Cathy Tournier
- Caty Casas
- Chan EY
- Chang Hwa Jung
- Changlian Zhu
- Chanhee Kang
- Chao-Yu Miao
- Charbel E.-H. Moussa
- Charleen T. Chu
- Charles Grose
- Charles L. Edelstein
- Charles Swanton
- Chee-Yin Chai
- Chenghan Wu
- Chenguang Wang
- Chengyu Liang
- Cheol O. Joe
- Cheol-Heui Yun
- Chera S
- Cheryl L. Walker
- Chi Hin Cho
- Chi-Ming Che
- Chia-Yi Kuan
- Chiara Di Pietro
- Chien-an A. Hu
- Chihiro Sasakawa
- Ching-Chow Chen
- Chiou-Feng Lin
- Christiaan Leeuwenburgh
- Christian Behl
- Christian Behrends
- Christian G. Meyer
- Christian Münz
- Christian Poüs
- Christian Sell
- Christine McDonald
- Christoph Schüller
- Christopher H.K. Cheng
- Christopher J. Rhodes
- Christopher R. McMaster
- Chun-Feng Liu
- Chun-Nam Lok
- Chwen-Ming Shih
- Ciechomska IA
- Cindy K. Miranti
- Cinthya Sternberg
- Ciro Isidoro
- Clarissa von Haefen
- Clark W. Distelhorst
- Claudia D. Spies
- Claudine Kraft
- Claudio Brancolini
- Claudio D. Gonzalez
- Claudio Hetz
- Claudio Schneider
- Claus Kerkhoff
- Clelia Miracco
- Clinton R. Bartholomew
- Colombo MI
- Cong-Zhao Zhou
- Congcong He
- Conrad C. Weihl
- Corey Nislow
- Cornelis A.M. de Haan
- Craig B. Thompson
- Craig M. Walsh
- Cristiano Simone
- Cristina González-Estévez
- Cuervo AM
- Cécile Vindis
- Céline Gongora
- Da-zhi Xu
- Dagda RK
- Dalibor Mijaljica
- Daniel E. Johnson
- Daniel F. Schorderet
- Daniel H. Fowler
- Daniel J. Klionsky
- Daniel J. Ledbetter
- Daniel M. Béchet
- Daniela Marazziti
- Dao-Cheng Wu
- Daolin Tang
- Daotai Nie
- Dave Bridges
- David A. Gewirtz
- David A. Hood
- David A. Leib
- David A. Sinclair
- David C. Chan
- David C. Rubinsztein
- David H. Kessel
- David H. Perlmutter
- David J. McConkey
- David K. Ann
- David L. Boone
- David M. Sabatini
- David S. Askew
- David Sulzer
- David Zacks
- Davide Malagoli
- Dawei Wang
- Debasish Sinha
- Denne SC
- Dennis E. Bulman
- Deok Ryong Kim
- Derek P. Narendra
- Derick G. Wansink
- Devrim Gozuacik
- Diane C. Bassham
- Diane C. Fingar
- Diane E. Merry
- Diane M. Ward
- Dieter Willbold
- Dimitri Krainc
- Dina Lev
- Dingzhong Tang
- Divaker Choubey
- Do-Hyung Kim
- Dong-Hou Kim
- Dong-Hyung Cho
- Dongsheng Cai
- Donna Denton
- DooSeok Choi
- Dubuisson JF
- Dun-Sheng Yang
- Duncan R. Smith
- Duska Separovic
- Ebru Goncu
- Edmond Y. Chan
- Edmund B. Rucker
- Eduardo Cebollero
- Eduardo Couve
- Edward A. Fisher
- Edward A. Fon
- Edward T.W. Bampton
- Eeva-Liisa Eskelinen
- Efrat Levy
- Efthimios Sivridis
- Eiichiro Nagata
- Eiki Kominami
- Eitan Shaulian
- Elaine C.M. Silva-Zacarin
- Elaine Silva-Zacarin
- Eldad Zacksenhaus
- Elena Gonzalez-Rey
- Eleonora Candi
- Elizabeth P. Henske
- Elizabeth Yang
- Elizete Rizzo
- Emery H. Bresnick
- Emil Rudolf
- Enza Maria Valente
- Eric Chevet
- Eric H. Baehrecke
- Eric J. Brown
- Eriko Fujita
- Erwin Knecht
- Eskelinen E-L
- Eui-Bae Jeung
- Eun-Kyoung Kim
- Eva C. Vaquero
- Eva-Maria Mandelkow
- Evelina Gatti
- Ewout J. Houwerzijl
- F. Javier Oliver
- Fabio C. Abdalla
- Fabrizio Condorelli
- Faith E. Davies
- Fan Wang
- Faqiang Li
- Farkas T
- Faustino Mollinedo
- Federica Sotgia
- Felix Randow
- Fen Wang
- Fen-Biao Gao
- Feng Han
- FengFeng Tian
- Fernando Macian
- Filomena Fiorito
- Fimia GM
- Fiona M. Menzies
- Francesca Bernassola
- Francesca Demarchi
- Francesca Rovetta
- Francesco Cecconi
- Francesco Fornai
- Francis V. Chisari
- Franco Fortunato
- Frank A. Sinicrope
- Frank C. Dorsey
- Frank Lafont
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- Yoshitaka Isaka
- Yoshitaka Takano
- Yotaro Izumi
- You-Wen He
- Youji Feng
- Young Ho Koh
- Young-Chau Liu
- Yu-Jen Chen
- Yuan Tian
- Yuangang Zhu
- Yuji Moriyasu
- Yuko Yoshikawa
- Yule Liu
- Yung-Feng Liao
- Yves L. Marcel
- Zahra Zakeri
- Zelda H. Cheung
- Zhang H
- Zhen Fan
- Zhen Lu
- Zhen-Bo Wang
- Zheng Dong
- Zheng-Hong Qin
- Zhenyu Yue
- Zhi-Jun Sun
- Zhi-Min Yuan
- Zhifen Yang
- Zhigang Charles Wang
- Zhijun Xi
- Zhinong Wang
- Zhiping Xie
- Zhixiang Chen
- Zhizhuang J. Zhao
- Zhonglin Xie
- Zhou G
- Zhu H
- Zixu Mao
- Zu-Hang Sheng
- Zuzana Papackova
- Zvulun Elazar
- Åsa B. Gustafsson
- Øverbye A
- Publication venue
- 'Informa UK Limited'
- Publication date
- 01/01/2012
- Field of study
In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field
Guidelines for the use and interpretation of assays for monitoring autophagy
- Author
- Abdalla Fabio C
- Abeliovich Hagai
- Abraham Robert T
- Acevedo-Arozena Abraham
- Adeli Khosrow
- Agholme Lotta
- Agnello Maria
- Agostinis Patrizia
- Aguirre-Ghiso Julio A
- Ahn Hyung Jun
- Ait-Mohamed Ouardia
- Ait-Si-Ali Slimane
- Akematsu Takahiko
- Akira Shizuo
- Al-Younes Hesham M
- Al-Zeer Munir A
- Albert Matthew L
- Albin Roger L
- Alegre-Abarrategui Javier
- Aleo Maria Francesca
- Alirezaei Mehrdad
- Almasan Alexandru
- Almonte-Becerril Maylin
- Amano Atsuo
- Amaravadi Ravi
- Amarnath Shoba
- Amer Amal O
- Anantharam Vellareddy
- Andrieu-Abadie Nathalie
- Ann David K
- Anoopkumar-Dukie Shailendra
- Aoki Hiroshi
- Apostolova Nadezda
- Arancia Giuseppe
- Aris John P
- Asanuma Katsuhiko
- Asare Nana Y O
- Ashida Hisashi
- Askanas Valerie
- Askew David S
- Auberger Patrick
- Baba Misuzu
- Backues Steven K
- Baehrecke Eric H
- Bahr Ben A
- Bai Xue-Yuan
- Bailly Yannick
- Baiocchi Robert
- Baldini Giulia
- Balduini Walter
- Ballabio Andrea
- Bamber Bruce A
- Bampton Edward T W
- Bartholomew Clinton R
- Bassham Diane C
- Bast Robert C
- Batoko Henri
- Bay Boon-Huat
- Beau Isabelle
- Begley Thomas J
- Behl Christian
- Behrends Christian
- Bekri Soumeya
- Bellaire Bryan
- Bendall Linda J
- Benetti Luca
- Berliocchi Laura
- Bernardi Henri
- Bernassola Francesca
- Besteiro Sébastien
- Bhatia-Kissova Ingrid
- Bi Xiaoning
- Biard-Piechaczyk Martine
- Blum Janice S
- Boise Lawrence H
- Bonaldo Paolo
- Boone David L
- Bornhauser Beat C
- Bortoluci Karina R
- Bossis Ioannis
- Bost Frédéric
- Bourquin Jean-Pierre
- Boya Patricia
- Boyer-Guittaut Michaël
- Bozhkov Peter V
- Brady Nathan R
- Brancolini Claudio
- Brech Andreas
- Brenman Jay E
- Brennand Ana
- Bresnick Emery H
- Brest Patrick
- Bridges Dave
- Bristol Molly L
- Brookes Paul S
- Brown Eric J
- Brumell John H
- Brunetti-Pierri Nicola
- Brunk Ulf T
- Bulman Dennis E
- Bultman Scott J
- Bultynck Geert
- Burbulla Lena F
- Bursch Wilfried
- Butchar Jonathan P
- Buzgariu Wanda
- Bydlowski Sergio P
- Bánhegyi Gábor
- Béchet Daniel M
- Cadwell Ken
- Cahová Monika
- Cai Dongsheng
- Cai Jiyang
- Cai Qian
- Calabretta Bruno
- Calvo-Garrido Javier
- Camougrand Nadine
- Campanella Michelangelo
- Campos-Salinas Jenny
- Candi Eleonora
- Cao Lizhi
- Caplan Allan B
- Carding Simon R
- Cardoso Sandra M
- Carew Jennifer S
- Carlin Cathleen R
- Carmignac Virginie
- Carneiro Leticia A M
- Carra Serena
- Caruso Rosario A
- Casari Giorgio
- Casas Caty
- Castino Roberta
- Cebollero Eduardo
- Cecconi Francesco
- Celli Jean
- Chaachouay Hassan
- Chae Han-Jung
- Chai Chee-Yin
- Chan David C
- Chan Edmond Y
- Chang Raymond Chuen-Chung
- Che Chi-Ming
- Chen Ching-Chow
- Chen Guang-Chao
- Chen Guo-Qiang
- Chen Min
- Chen Quan
- Chen Steve S-L
- Chen Wenli
- Chen Xi
- Chen Xiangmei
- Chen Xiequn
- Chen Ye-Guang
- Chen Yingyu
- Chen Yongqiang
- Chen Yu-Jen
- Chen Zhixiang
- Cheng Alan
- Cheng Christopher H K
- Cheng Yan
- Cheong Heesun
- Cheong Jae-Ho
- Cherry Sara
- Chess-Williams Russ
- Cheung Zelda H
- Chevet Eric
- Chiang Hui-Ling
- Chiarelli Roberto
- Chiba Tomoki
- Chin Lih-Shen
- Chiou Shih-Hwa
- Chisari Francis V
- Cho Chi Hin
- Cho Dong-Hyung
- Choi Augustine M K
- Choi Dooseok
- Choi Kyeong Sook
- Choi Mary E
- Chouaib Salem
- Choubey Divaker
- Choubey Vinay
- Chu Charleen T
- Chuang Tsung-Hsien
- Chueh Sheau-Huei
- Chun Taehoon
- Chwae Yong-Joon
- Chye Mee-Len
- Ciarcia Roberto
- Ciriolo Maria R
- Clague Michael J
- Clark Robert S B
- Clarke Peter G H
- Clarke Robert
- Codogno Patrice
- Coller Hilary A
- Colombo María I
- Comincini Sergio
- Condello Maria
- Condorelli Fabrizio
- Cookson Mark R
- Coombs Graham H
- Coppens Isabelle
- Corbalan Ramon
- Cossart Pascale
- Costelli Paola
- Costes Safia
- Coto-Montes Ana
- Couve Eduardo
- Coxon Fraser P
- Cregg James M
- Crespo José L
- Cronjé Marianne J
- Cuervo Ana Maria
- Cullen Joseph J
- Czaja Mark J
- D'Amelio Marcello
- Darfeuille-Michaud Arlette
- Davids Lester M
- Davies Faith E
- De Felici Massimo
- de Groot John F
- de Haan Cornelis A M
- De Martino Luisa
- De Milito Angelo
- De Tata Vincenzo
- Debnath Jayanta
- Degterev Alexei
- Dehay Benjamin
- Delbridge Lea M D
- Demarchi Francesca
- Deng Yi Zhen
- Dengjel Jörn
- Dent Paul
- Denton Donna
- Deretic Vojo
- Desai Shyamal D
- Devenish Rodney J
- Di Gioacchino Mario
- Di Paolo Gilbert
- Di Pietro Chiara
- Diaz-Meco Maria T
- Diaz-Nido Javier
- Dikic Ivan
- Dinesh-Kumar Savithramma P
- Ding Wen-Xing
- Distelhorst Clark W
- Diwan Abhinav
- Djavaheri-Mergny Mojgan
- Dokudovskaya Svetlana
- Dong Zheng
- Dorsey Frank C
- Dosenko Victor
- Dowling James J
- Doxsey Stephen
- Dreux Marlène
- Drew Mark E
- Duan Qiuhong
- Duchosal Michel A
- Duff Karen
- Dugail Isabelle
- Durbeej Madeleine
- Duszenko Michael
- Díaz-Araya Guillermo
- Díaz-Laviada Inés
- Edelstein Charles L
- Edinger Aimee L
- Egea Gustavo
- Eichinger Ludwig
- Eissa N Tony
- Ekmekcioglu Suhendan
- El-Deiry Wafik S
- Elazar Zvulun
- Elgendy Mohamed
- Ellerby Lisa M
- Eng Kai Er
- Engelbrecht Anna-Mart
- Engelender Simone
- Erenpreisa Jekaterina
- Escalante Ricardo
- Esclatine Audrey
- Eskelinen Eeva-Liisa
- Espert Lucile
- Espina Virginia
- Fan Huizhou
- Fan Jia
- Fan Qi-Wen
- Fan Zhen
- Fang Shengyun
- Fang Yongqi
- Fanto Manolis
- Fanzani Alessandro
- Farkas Thomas
- Farré Jean-Claude
- Faure Mathias
- Fechheimer Marcus
- Feng Carl G
- Feng Jian
- Feng Qili
- Feng Youji
- Feuer Ralph
- Figueiredo-Pereira Maria E
- Fimia Gian Maria
- Fingar Diane C
- Finkbeiner Steven
- Finkel Toren
- Finley Kim D
- Fiorito Filomena
- Fisher Edward A
- Fisher Paul B
- Flajolet Marc
- Florez-McClure Maria L
- Florio Salvatore
- Fon Edward A
- Fornai Francesco
- Fortunato Franco
- Fotedar Rati
- Fowler Daniel H
- Fox Howard S
- Franco Rodrigo
- Frankel Lisa B
- Fransen Marc
- Fuentes José M
- Fueyo Juan
- Fujii Jun
- Fujisaki Kozo
- Fujita Eriko
- Fukuda Mitsunori
- Furukawa Ruth H
- Fésüs László
- Gaestel Matthias
- Gailly Philippe
- Gajewska Malgorzata
- Galliot Brigitte
- Galy Vincent
- Ganesh Subramaniam
- Ganetzky Barry
- Ganley Ian G
- Gao Fen-Biao
- Gao George F
- Gao Jinming
- Garcia Lorena
- Garcia-Manero Guillermo
- Garcia-Marcos Mikel
- Garmyn Marjan
- Gartel Andrei L
- Gatti Evelina
- Gautel Mathias
- Gawriluk Thomas R
- Gegg Matthew E
- Geng Jiefei
- Germain Marc
- Gestwicki Jason E
- Gewirtz David A
- Ghavami Saeid
- Ghosh Pradipta
- Giammarioli Anna M
- Giatromanolaki Alexandra N
- Gibson Spencer B
- Gilkerson Robert W
- Ginger Michael L
- Ginsberg Henry N
- Golab Jakub
- Goligorsky Michael S
- Golstein Pierre
- Gomez-Manzano Candelaria
- Goncu Ebru
- Gongora Céline
- Gonzalez Claudio D
- Gonzalez Ramon
- Gonzalez-Rey Elena
- González-Estévez Cristina
- González-Polo Rosa Ana
- Gorbunov Nikolai V
- Gorski Sharon
- Goruppi Sandro
- Gottlieb Roberta A
- Gozuacik Devrim
- Granato Giovanna Elvira
- Grant Gary D
- Green Kim N
- Gregorc Aleš
- Gros Frédéric
- Grose Charles
- Grunt Thomas W
- Gual Philippe
- Guan Jun-Lin
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- Gukovskaya Anna S
- Gukovsky Ilya
- Gunst Jan
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- Halayko Andrew J
- Hale Amber N
- Halonen Sandra K
- Hamasaki Maho
- Han Feng
- Han Ting
- Hancock Michael K
- Hansen Malene
- Harada Hisashi
- Harada Masaru
- Hardt Stefan E
- Harper J Wade
- Harris Adrian L
- Harris James
- Harris Steven D
- Hashimoto Makoto
- Haspel Jeffrey A
- Hayashi Shin-ichiro
- Hazelhurst Lori A
- He Congcong
- He You-Wen
- Heidenreich Kim A
- Helfrich Miep H
- Helgason Gudmundur V
- Henske Elizabeth P
- Herman Brian
- Herman Paul K
- Hetz Claudio
- Hilfiker Sabine
- Hill Joseph A
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- Hofman Paul
- Hofmann Thomas G
- Holyoake Tessa L
- Hong Ming-Huang
- Hood David A
- Hotamisligil Gökhan S
- Houwerzijl Ewout J
- Hu Bingren
- Hu Chien-An A
- Hu Hong-Ming
- Hua Ya
- Huang Canhua
- Huang Ju
- Huang Shengbing
- Huang Wei-Pang
- Huber Tobias B
- Huh Won-Ki
- Hung Tai-Ho
- Hupp Ted R
- Hur Gang Min
- Hurley James B
- Hussain Sabah N A
- Hussey Patrick J
- Hwang Jung Jin
- Hwang Seungmin
- Hébert Marie-Joseé
- Höhfeld Jörg
- Høyer-Hansen Maria
- Ichihara Atsuhiro
- Ilkhanizadeh Shirin
- Inoki Ken
- Into Takeshi
- Iovane Valentina
- Iovanna Juan L
- Ip Nancy Y
- Isaka Yoshitaka
- Ishida Hiroyuki
- Isidoro Ciro
- Isobe Ken-ichi
- Iwasaki Akiko
- Izquierdo Marta
- Izumi Yotaro
- Jaakkola Panu M
- Jackson George R
- Jackson William T
- Janji Bassam
- Jendrach Marina
- Jeon Ju-Hong
- Jeung Eui-Bae
- Jiang Hong
- Jiang Hongchi
- Jiang Jean X
- Jiang Ming
- Jiang Qing
- Jiang Xuejun
- Jiang Xuejun
- Jiménez Alberto
- Jin Meiyan
- Jin Shengkan
- Joe Cheol O
- Johansen Terje
- Johnson Daniel E
- Johnson Gail V W
- Jones Nicola L
- Joseph Bertrand
- Joseph Suresh K
- Joubert Annie M
- Juhász Gábor
- Juillerat-Jeanneret Lucienne
- Jung Chang Hwa
- Jung Yong-Keun
- Jäättelä Marja
- Kaarniranta Kai
- Kaasik Allen
- Kabuta Tomohiro
- Kadowaki Motoni
- Kagedal Katarina
- Kamada Yoshiaki
- Kaminskyy Vitaliy O
- Kampinga Harm H
- Kanamori Hiromitsu
- Kang Chanhee
- Kang Khong Bee
- Kang Kwang Il
- Kang Rui
- Kang Yoon-A
- Kanki Tomotake
- Kanneganti Thirumala-Devi
- Kanno Haruo
- Kanthasamy Anumantha G
- Kanthasamy Arthi
- Karantza Vassiliki
- Kaushal Gur P
- Kaushik Susmita
- Kawazoe Yoshinori
- Ke Po-Yuan
- Kehrl John H
- Kelekar Ameeta
- Kerkhoff Claus
- Kessel David H
- Khalil Hany
- Kiel Jan A K W
- Kiger Amy A
- Kihara Akio
- Kim Deok Ryong
- Kim Do-Hyung
- Kim Dong-Hou
- Kim Eun-Kyoung
- Kim Hyung-Ryong
- Kim Jae-Sung
- Kim Jeong Hun
- Kim Jin Cheon
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- Kim Seong Who
- Kim Yong-Sun
- Kim Yonghyun
- Kimchi Adi
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- Kirkin Vladimir
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- Kitamoto Katsuhiko
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- Kong Hee Jeong
- Kong Wei-Jia
- Korolchuk Viktor I
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- Kroemer Guido
- Krut Oleg
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- Ktistakis Nicholas T
- Kuan Chia-Yi
- Kucharczyk Roza
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- Kundu Mondira
- Kung Hsing-Jien
- Kurz Tino
- Kwon Ho Jeong
- La Spada Albert R
- Lafont Frank
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- Lavandero Sergio
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- Le Weidong
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- Lee Byung-Wan
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- Lee Ju-Hyun
- Lee Michael
- Lee Myung-Shik
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- Leeuwenburgh Christiaan
- Legembre Patrick
- Legouis Renaud
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- Lesniak Maciej S
- Lev Dina
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- Levine Beth
- Levy Efrat
- Li Faqiang
- Li Jun-Lin
- Li Lian
- Li Sheng
- Li Weijie
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- Liang Qiangrong
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- Lieberman Andrew
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- Liu Wei
- Liu Young-Chau
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- Lok Chun-Nam
- Lonial Sagar
- Loos Benjamin
- Lopez-Berestein Gabriel
- Lossi Laura
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- Lu Binfeng
- Lu Bingwei
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- Lu Zhen
- Luciano Frédéric
- Lukacs Nicholas W
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- László Lajos
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- Malorni Walter
- Man Na
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- Manon Stéphen
- Manov Irena
- Mao Kai
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- Marazziti Daniela
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- Milojkovic Ana
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- Miracco Clelia
- Miranti Cindy K
- Mitroulis Ioannis
- Miyazawa Keisuke
- Mizushima Noboru
- Mograbi Baharia
- Mohseni Simin
- Molero Xavier
- Mollereau Bertrand
- Mollinedo Faustino
- Momoi Takashi
- Monastyrska Iryna
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- Monteiro Mervyn J
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- Mora Rodrigo
- Moreau Kevin
- Moreira Paula I
- Moriyasu Yuji
- Moscat Jorge
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- Motyl Tomasz
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- Muller Sylviane
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- Musarò Antonio
- Mysorekar Indira
- Müller Sylke
- Münger Karl
- Münz Christian
- Nagata Eiichiro
- Nagata Kazuhiro
- Nahimana Aimable
- Nair Usha
- Nakagawa Toshiyuki
- Nakahira Kiichi
- Nakano Hiroyasu
- Nakatogawa Hitoshi
- Nanjundan Meera
- Naqvi Naweed I
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- Nemchenko Andriy
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- Ney Paul A
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- Nguyen Huu Phuc
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- Nishino Ichizo
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- Nixon Ralph A
- Noda Takeshi
- Noegel Angelika A
- Nogalska Anna
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- Notterpek Lucia
- Novak Ivana
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- Nukina Nobuyuki
- Nyfeler Beat
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- Oddo Salvatore
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- Ohashi Toya
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- Otsu Kinya
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- Ouimet Mireille
- Overholtzer Michael
- Ozpolat Bulent
- Paganetti Paolo
- Pagnini Ugo
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- Palumbo Camilla
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- Prasad Anil
- Prescott Mark
- Priault Muriel
- Produit-Zengaffinen Nathalie
- Progulske-Fox Ann
- Proikas-Cezanne Tassula
- Przedborski Serge
- Przyklenk Karin
- Prætorius-Ibba Mette
- Puertollano Rosa
- Puyal Julien
- Pöggeler Stefanie
- Qian Shu-Bing
- Qin Liang
- Qin Zheng-Hong
- Quaggin Susan E
- Raben Nina
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- Rabkin Simon W
- Rahman Irfan
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- Rocchi Stephane
- Rodemann H Peter
- Rodríguez de Córdoba Santiago
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In 2008 we published the first set of guidelines for standardizing research in autophagy. Since then, research on this topic has continued to accelerate, and many new scientists have entered the field. Our knowledge base and relevant new technologies have also been expanding. Accordingly, it is important to update these guidelines for monitoring autophagy in different organisms. Various reviews have described the range of assays that have been used for this purpose. Nevertheless, there continues to be confusion regarding acceptable methods to measure autophagy, especially in multicellular eukaryotes. A key point that needs to be emphasized is that there is a difference between measurements that monitor the numbers or volume of autophagic elements (e.g., autophagosomes or autolysosomes) at any stage of the autophagic process vs. those that measure flux through the autophagy pathway (i.e., the complete process); thus, a block in macroautophagy that results in autophagosome accumulation needs to be differentiated from stimuli that result in increased autophagic activity, defined as increased autophagy induction coupled with increased delivery to, and degradation within, lysosomes (in most higher eukaryotes and some protists such as Dictyostelium) or the vacuole (in plants and fungi). In other words, it is especially important that investigators new to the field understand that the appearance of more autophagosomes does not necessarily equate with more autophagy. In fact, in many cases, autophagosomes accumulate because of a block in trafficking to lysosomes without a concomitant change in autophagosome biogenesis, whereas an increase in autolysosomes may reflect a reduction in degradative activity. Here, we present a set of guidelines for the selection and interpretation of methods for use by investigators who aim to examine macroautophagy and related processes, as well as for reviewers who need to provide realistic and reasonable critiques of papers that are focused on these processes. These guidelines are not meant to be a formulaic set of rules, because the appropriate assays depend in part on the question being asked and the system being used. In addition, we emphasize that no individual assay is guaranteed to be the most appropriate one in every situation, and we strongly recommend the use of multiple assays to monitor autophagy. In these guidelines, we consider these various methods of assessing autophagy and what information can, or cannot, be obtained from them. Finally, by discussing the merits and limits of particular autophagy assays, we hope to encourage technical innovation in the field