Human-carnivore relations: conflicts, tolerance and coexistence in the American West

Carnivore and humans live in proximity due to carnivore recovery efforts and ongoing human encroachment into carnivore habitats globally. The American West is a region that uniquely exemplifies these human-carnivore dynamics, however, it is unclear how the research community here integrates social and ecological factors to examine human-carnivore relations. Therefore, strategies promoting human-carnivore coexistence are urgently needed. We conducted a systematic review on human-carnivore relations in the American West covering studies between 2000 and 2018. We first characterized human-carnivore relations across states of the American West. Second, we analyzed similarities and dissimilarities across states in terms of coexistence, tolerance, number of ecosystem services and conflicts mentioned in literature. Third, we used Bayesian modeling to quantify the effect of social and ecological factors influencing the scientific interest on coexistence, tolerance, ecosystem services and conflicts. Results revealed some underlying biases in human-carnivore relations research. Colorado and Montana were the states where the highest proportion of studies were conducted with bears and wolves the most studied species. Non-lethal management was the most common strategy to mitigate conflicts. Overall, conflicts with carnivores were much more frequently mentioned than benefits. We found similarities among Arizona, California, Utah, and New Mexico according to how coexistence, tolerance, services and conflicts are addressed in literature. We identified percentage of federal/private land, carnivore family, social actors, and management actions, as factors explaining how coexistence, tolerance, conflicts and services are addressed in literature. We provide a roadmap to foster tolerance towards carnivores and successful coexistence strategies in the American West based on four main domains, (1) the dual role of carnivores as providers of both beneficial and detrimental contributions to people, (2) social-ecological factors underpinning the provision of beneficial and detrimental contributions, (3) the inclusion of diverse actors, and (4) cross-state collaborative management

Occurrence Patterns of Afrotropical Ticks (Acari: Ixodidae) in the Climate Space Are Not Correlated with Their Taxonomic Relationships

Foci of tick species occur at large spatial scales. They are intrinsically difficult to detect because the effect of geographical factors affecting conceptual influence of climate gradients. Here we use a large dataset of occurrences of ticks in the Afrotropical region to outline the main associations of those tick species with the climate space. Using a principal components reduction of monthly temperature and rainfall values over the Afrotropical region, we describe and compare the climate spaces of ticks in a gridded climate space. The dendrogram of distances among taxa according to occurrences in the climate niche is used to draw functional groups, or clusters of species with similar occurrences in the climate space, as different from morphologically derived (taxonomical) groups. We aim to further define the drivers of species richness and endemism at such a grid as well as niche similarities (climate space overlap) among species. Groups of species, as defined from morphological traits alone, are uncorrelated with functional clusters. Taxonomically related species occur separately in the climate gradients. Species belonging to the same functional group share more niche among them than with species in other functional groups. However, niche equivalency is also low for species within the same taxonomic cluster. Thus, taxa evolving from the same lineage tend to maximize the occupancy of the climate space and avoid overlaps with other species of the same taxonomic group. Richness values are drawn across the gradient of seasonal variation of temperature, higher values observed in a portion of the climate space with low thermal seasonality. Richness and endemism values are weakly correlated with mean values of temperature and rainfall. The most parsimonious explanation for the different taxonomic groups that exhibit common patterns of climate space subdivision is that they have a shared biogeographic history acting over a group of ancestrally co-distributed organisms

Olive Oil effectively mitigates ovariectomy-induced osteoporosis in rats

<p>Abstract</p> <p>Background</p> <p>Osteoporosis, a reduction in bone mineral density, represents the most common metabolic bone disease. Postmenopausal women are particularly susceptible to osteoporosis when their production of estrogen declines. For these women, fracture is a leading cause of morbidity and mortality. This study was conducted to evaluate the protective effects of olive oil supplementation against osteoporosis in ovariectomized (OVX) rats.</p> <p>Methods</p> <p>We studied adult female Wistar rats aged 12-14 months, divided into three groups: sham-operated control (SHAM), ovariectomized (OVX), and ovariectomized rats supplemented with extravirgin olive oil (Olive-OVX) orally for 12 weeks; 4 weeks before ovariectomy and 8 weeks after. At the end of the experiment, blood samples were collected. Plasma levels of calcium, phosphorus, alkaline phosphatase (ALP), malondialdehyde (MDA), and nitrates were assayed. Specimens from both the tibia and the liver were processed for light microscopic examination. Histomorphometric analysis of the tibia was also performed.</p> <p>Results</p> <p>The OVX-rats showed a significant decrease in plasma calcium levels, and a significant increase in plasma ALP, MDA, and nitrates levels. These changes were attenuated by olive oil supplementation in the Olive-OVX rats. Light microscopic examination of the tibia of the OVX rats revealed a significant decrease in the cortical bone thickness (CBT) and the trabecular bone thickness (TBT). In addition, there was a significant increase in the osteoclast number denoting bone resorption. In the Olive-OVX rats these parameters were markedly improved as compared to the OVX group. Examination of the liver specimens revealed mononuclear cellular infiltration in the portal areas in the OVX-rats which was not detected in the Olive-OVX rats.</p> <p>Conclusions</p> <p>Olive oil effectively mitigated ovariectomy-induced osteoporosis in rats, and is a promising candidate for the treatment of postmenopausal osteoporosis.</p

Search for CP violation in D+→ϕπ+ and D+s→K0Sπ+ decays

A search for CP violation in D + → ϕπ + decays is performed using data collected in 2011 by the LHCb experiment corresponding to an integrated luminosity of 1.0 fb−1 at a centre of mass energy of 7 TeV. The CP -violating asymmetry is measured to be (−0.04 ± 0.14 ± 0.14)% for candidates with K − K + mass within 20 MeV/c 2 of the ϕ meson mass. A search for a CP -violating asymmetry that varies across the ϕ mass region of the D + → K − K + π + Dalitz plot is also performed, and no evidence for CP violation is found. In addition, the CP asymmetry in the D+s→K0Sπ+ decay is measured to be (0.61 ± 0.83 ± 0.14)%

Optimization of atmospheric plasma treatment of LDPE films: Influence on adhesive properties and ageing behavior

One of the major disadvantages of low density polyethylene (LDPE) films is their poor adhesive properties. Therefore, LDPE films have been treated with atmospheric pressure air plasma in order to improve their surface properties. So as to simulate the possible conditions in an industrial process, the samples have been treated with two different sample distances (6 and 10 mm), and treatment rates between 100 and 1000 mm s-1. The different sample distances are the distance of the sample from the plasma source. The variation of the surface properties and adhesion characteristics of the films were investigated for different aging times after plasma exposure (up to 21 days) using contact angle measurement, atomic force microscopy, weight loss measurements and shear test. Results show that the treatment increases the polar component () and these changes improve adhesive properties of the material. After the twenty-first day, the ageing process causes a decrease of wettability and adhesive properties of the LDPE films (up to 60%).Fombuena Borrás, V.; García Sanoguera, D.; Sánchez Nacher, L.; Balart Gimeno, RA.; Boronat Vitoria, T. (2014). Optimization of atmospheric plasma treatment of LDPE films: Influence on adhesive properties and ageing behavior. Journal of Adhesion Science and Technology. 28(1):97-113. doi:10.1080/01694243.2013.847045S97113281Achilias, D. S., Roupakias, C., Megalokonomos, P., Lappas, A. A., & Antonakou, Ε. V. (2007). Chemical recycling of plastic wastes made from polyethylene (LDPE and HDPE) and polypropylene (PP). Journal of Hazardous Materials, 149(3), 536-542. doi:10.1016/j.jhazmat.2007.06.076Friedman, M., & Walsh, G. (2002). High performance films: Review of new materials and trends. Polymer Engineering & Science, 42(8), 1756-1788. doi:10.1002/pen.11069Wiles, D. M., & Scott, G. (2006). Polyolefins with controlled environmental degradability. Polymer Degradation and Stability, 91(7), 1581-1592. doi:10.1016/j.polymdegradstab.2005.09.010Gao, J., Lei, J., Li, Q., & Ye, S. (2004). Functionalized low-density polyethylene via a novel photografting method and its adhesion properties. Journal of Adhesion Science and Technology, 18(2), 195-203. doi:10.1163/156856104772759403Shenton, M. J., Lovell-Hoare, M. C., & Stevens, G. C. (2001). Adhesion enhancement of polymer surfaces by atmospheric plasma treatment. Journal of Physics D: Applied Physics, 34(18), 2754-2760. doi:10.1088/0022-3727/34/18/307Belgacem, M. N., Salon-Brochier, M. C., Krouit, M., & Bras, J. (2011). Recent Advances in Surface Chemical Modification of Cellulose Fibres. Journal of Adhesion Science and Technology, 25(6-7), 661-684. doi:10.1163/016942410x525867Friedrich, J., Unger, W., & Lippitz, A. (1995). Plasma modification of polymer surfaces. Macromolecular Symposia, 100(1), 111-115. doi:10.1002/masy.19951000118Ladizesky, N. H., & Ward, I. M. (1989). The adhesion behaviour of high modulus polyethylene fibres following plasma and chemical treatment. Journal of Materials Science, 24(10), 3763-3773. doi:10.1007/bf02385768Nardin, M., & Ward, I. M. (1987). Influence of surface treatment on adhesion of polyethylene fibres. Materials Science and Technology, 3(10), 814-826. doi:10.1179/mst.1987.3.10.814Villagra Di Carlo, B., Gottifredi, J. C., & Habert, A. C. (2010). Synthesis and characterization of composite membrane by deposition of acrylic acid plasma polymer onto pre-treated polyethersulfone support. Journal of Materials Science, 46(6), 1850-1856. doi:10.1007/s10853-010-5012-4Matsunaga, M., & Whitney, P. J. (2000). Surface changes brought about by corona discharge treatment of polyethylene film and the effect on subsequent microbial colonisation. Polymer Degradation and Stability, 70(3), 325-332. doi:10.1016/s0141-3910(00)00105-1Novák, I., Pollák, V., & Chodák, I. (2006). Study of Surface Properties of Polyolefins Modified by Corona Discharge Plasma. Plasma Processes and Polymers, 3(4-5), 355-364. doi:10.1002/ppap.200500163Arpagaus, C., Rossi, A., & Rudolf von Rohr, P. (2005). Short-time plasma surface modification of HDPE powder in a Plasma Downer Reactor – process, wettability improvement and ageing effects. Applied Surface Science, 252(5), 1581-1595. doi:10.1016/j.apsusc.2005.02.099Morra, M., Occhiello, E., Marola, R., Garbassi, F., Humphrey, P., & Johnson, D. (1990). On the aging of oxygen plasma-treated polydimethylsiloxane surfaces. Journal of Colloid and Interface Science, 137(1), 11-24. doi:10.1016/0021-9797(90)90038-pKim, K. S., Ryu, C. M., Park, C. S., Sur, G. S., & Park, C. E. (2003). Investigation of crystallinity effects on the surface of oxygen plasma treated low density polyethylene using X-ray photoelectron spectroscopy. Polymer, 44(20), 6287-6295. doi:10.1016/s0032-3861(03)00674-8Kim, S. H., Ha, H. J., Ko, Y. K., Yoon, S. J., Rhee, J. M., Kim, M. S., … Khang, G. (2007). Correlation of proliferation, morphology and biological responses of fibroblasts on LDPE with different surface wettability. Journal of Biomaterials Science, Polymer Edition, 18(5), 609-622. doi:10.1163/156856207780852514Borcia, G., Anderson, C. A., & Brown, N. M. D. (2004). The surface oxidation of selected polymers using an atmospheric pressure air dielectric barrier discharge. Part I. Applied Surface Science, 221(1-4), 203-214. doi:10.1016/s0169-4332(03)00879-1Pascual, M., Calvo, O., Sanchez-Nácher, L., Bonet, M. A., Garcia-Sanoguera, D., & Balart, R. (2009). Optimization of adhesive joints of low density polyethylene (LDPE) composite laminates with polyolefin foam using corona discharge plasma. Journal of Applied Polymer Science, 114(5), 2971-2977. doi:10.1002/app.30906Encinas, N., Díaz-Benito, B., Abenojar, J., & Martínez, M. A. (2010). Extreme durability of wettability changes on polyolefin surfaces by atmospheric pressure plasma torch. Surface and Coatings Technology, 205(2), 396-402. doi:10.1016/j.surfcoat.2010.06.069Takke, V., Behary, N., Perwuelz, A., & Campagne, C. (2009). Studies on the atmospheric air-plasma treatment of PET (polyethylene terephtalate) woven fabrics: Effect of process parameters and of aging. Journal of Applied Polymer Science, 114(1), 348-357. doi:10.1002/app.30618Awaja, F., Gilbert, M., Kelly, G., Fox, B., & Pigram, P. J. (2009). Adhesion of polymers. Progress in Polymer Science, 34(9), 948-968. doi:10.1016/j.progpolymsci.2009.04.007Garcia, D., Sanchez, L., Fenollar, O., Lopez, R., & Balart, R. (2008). Modification of polypropylene surface by CH4–O2 low-pressure plasma to improve wettability. Journal of Materials Science, 43(10), 3466-3473. doi:10.1007/s10853-007-2322-2Guimond, S., & Wertheimer, M. R. (2004). Surface degradation and hydrophobic recovery of polyolefins treated by air corona and nitrogen atmospheric pressure glow discharge. Journal of Applied Polymer Science, 94(3), 1291-1303. doi:10.1002/app.21134Pascual, M., Balart, R., Sánchez, L., Fenollar, O., & Calvo, O. (2008). Study of the aging process of corona discharge plasma effects on low density polyethylene film surface. Journal of Materials Science, 43(14), 4901-4909. doi:10.1007/s10853-008-2712-0Sanchis, R., Fenollar, O., García, D., Sánchez, L., & Balart, R. (2008). Improved adhesion of LDPE films to polyolefin foams for automotive industry using low-pressure plasma. International Journal of Adhesion and Adhesives, 28(8), 445-451. doi:10.1016/j.ijadhadh.2008.04.002Fresnais, J., Chapel, J. P., Benyahia, L., & Poncin-Epaillard, F. (2009). Plasma-Treated Superhydrophobic Polyethylene Surfaces: Fabrication, Wetting and Dewetting Properties. Journal of Adhesion Science and Technology, 23(3), 447-467. doi:10.1163/156856108x370127Abenojar, J., Colera, I., Martínez, M. A., & Velasco, F. (2010). Study by XPS of an Atmospheric Plasma-Torch Treated Glass: Influence on Adhesion. Journal of Adhesion Science and Technology, 24(11-12), 1841-1854. doi:10.1163/016942410x507614Lommatzsch, U., Pasedag, D., Baalmann, A., Ellinghorst, G., & Wagner, H.-E. (2007). Atmospheric Pressure Plasma Jet Treatment of Polyethylene Surfaces for Adhesion Improvement. Plasma Processes and Polymers, 4(S1), S1041-S1045. doi:10.1002/ppap.200732402Balu, B., Berry, A. D., Patel, K. T., Breedveld, V., & Hess, D. W. (2011). Directional Mobility and Adhesion of Water Drops on Patterned Superhydrophobic Surfaces. Journal of Adhesion Science and Technology, 25(6-7), 627-642. doi:10.1163/016942410x525849Bhattacharya, S., Singh, R. K., Mandal, S., Ghosh, A., Bok, S., Korampally, V., … Gangopadhyay, S. (2010). Plasma Modification of Polymer Surfaces and Their Utility in Building Biomedical Microdevices. Journal of Adhesion Science and Technology, 24(15-16), 2707-2739. doi:10.1163/016942410x511105Das, S., Neogi, S., Chainy, G. B. N., & Guha, S. K. (2011). A Novel Two-Step Procedure for Plasma Surface Modification of Low-Density Polyethylene for Improved Drug Adhesion in Intra Uterine Devices (IUDs). Journal of Adhesion Science and Technology, 25(1-3), 151-167. doi:10.1163/016942410x503285Schulz, U., Munzert, P., & Kaiser, N. (2010). Plasma Surface Modification of PMMA for Optical Applications. Journal of Adhesion Science and Technology, 24(7), 1283-1289. doi:10.1163/016942409x12561252292026Silverstein, M. S., Breuer, O., & Dodiuk, H. (1994). Surface modification of UHMWPE fibers. Journal of Applied Polymer Science, 52(12), 1785-1795. doi:10.1002/app.1994.070521213Inagaki, N., Narushim, K., Tuchida, N., & Miyazaki, K. (2004). Surface characterization of plasma-modified poly(ethylene terephthalate) film surfaces. Journal of Polymer Science Part B: Polymer Physics, 42(20), 3727-3740. doi:10.1002/polb.20234Nakamatsu, J., Delgado-Aparicio, L. F., Da Silva, R., & Soberon, F. (1999). Ageing of plasma-treated poly(tetrafluoroethylene) surfaces. Journal of Adhesion Science and Technology, 13(7), 753-761. doi:10.1163/156856199x00983Yun, Y. I., Kim, K. S., Uhm, S.-J., Khatua, B. B., Cho, K., Kim, J. K., & Park, C. E. (2004). Aging behavior of oxygen plasma-treated polypropylene with different crystallinities. Journal of Adhesion Science and Technology, 18(11), 1279-1291. doi:10.1163/1568561041588200Morent, R., De Geyter, N., Leys, C., Gengembre, L., & Payen, E. (2007). Study of the ageing behaviour of polymer films treated with a dielectric barrier discharge in air, helium and argon at medium pressure. Surface and Coatings Technology, 201(18), 7847-7854. doi:10.1016/j.surfcoat.2007.03.018Zhao, B., & Kwon, H. J. (2011). Adhesion of Polymers in Paper Products from the Macroscopic to Molecular Level — An Overview. Journal of Adhesion Science and Technology, 25(6-7), 557-579. doi:10.1163/016942410x52582

Pegylated Interferon and Ribavirin Dosing Strategies to Enhance Sustained Virologic Response

Hepatitis C virus (HCV) affects about 170 million people worldwide and is the most common chronic blood borne infection in the United States. Since the advent of blood screening protocols in the early 1990s, injection drug use has become the leading cause of infection. Hepatitis C can have both hepatic and nonhepatic manifestations of infection. Hepatic manifestations include hepatic fibrosis, cirrhosis, liver cancer, and liver failure. The standard treatment for chronic HCV is combination therapy with pegylated interferon-α and ribavirin. Although pegylated interferon and ribavirin has been used against HCV for close to a decade, advances in therapy have centered on doses and treatment durations. There has been increasing interest in applying on-treatment response or viral kinetics to predict antiviral response rates and shape therapeutic intervention. Protease inhibitors are a promising adjuvant to combination therapy, but their efficacy and safety are still under investigation

Open data and digital morphology

Over the past two decades, the development of methods for visualizing and analysing specimens digitally, in three and even four dimensions, has transformed the study of living and fossil organisms. However, the initial promise, that the widespread application of such methods would facilitate access to the underlying digital data, has not been fully achieved. The underlying datasets for many published studies are not readily or freely available, introducing a barrier to verification and reproducibility, and the reuse of data. There is no current agreement or policy on the amount and type of data that should be made available alongside studies that use, and in some cases are wholly reliant on, digital morphology. Here, we propose a set of recommendations for minimum standards and additional best practice for 3D digital data publication, and review the issues around data storage, management and accessibility

Introgression and rapid species turnover in sympatric damselflies

<p>Abstract</p> <p>Background</p> <p>Studying contemporary hybridization increases our understanding of introgression, adaptation and, ultimately, speciation. The sister species <it>Ischnura elegans </it>and <it>I. graellsii </it>(Odonata: Coenagrionidae) are ecologically, morphologically and genetically similar and hybridize. Recently, <it>I. elegans </it>has colonized northern Spain, creating a broad sympatric region with <it>I. graellsii</it>. Here, we review the distribution of both species in Iberia and evaluate the degree of introgression of <it>I. graellsii </it>into <it>I. elegans </it>using six microsatellite markers (442 individuals from 26 populations) and five mitochondrial genes in sympatric and allopatric localities. Furthermore, we quantify the effect of hybridization on the frequencies of the genetically controlled colour polymorphism in females of both species.</p> <p>Results</p> <p>In a principal component analysis of the microsatellite data, the first two principal components summarised almost half (41%) of the total genetic variation. The first axis revealed a clear separation of <it>I. graellsii </it>and <it>I</it>. <it>elegans </it>populations, while the second axis separated <it>I. elegans </it>populations. Admixture analyses showed extensive hybridization and introgression in <it>I. elegans </it>populations, consistent with <it>I. elegans </it>backcrosses and occasional F₁-hybrids, suggesting hybridization is on-going. More specifically, approximately 58% of the 166 Spanish <it>I. elegans </it>individuals were assigned to the <it>I. elegans </it>backcross category, whereas not a single of those individuals was assigned to the backcross with <it>I. graellsii</it>. The mitochondrial genes held little genetic variation, and the most common haplotype was shared by the two species.</p> <p>Conclusions</p> <p>The results suggest rapid species turnover in sympatric regions in favour of <it>I. elegans</it>, corroborating previous findings that <it>I. graellsii </it>suffers a mating disadvantage in sympatry with <it>I. elegans</it>. Examination of morph frequency dynamics indicates that hybridization is likely to have important implications for the maintenance of multiple female morphs, in particular during the initial period of hybridization.</p

Characterisation of pathogen-specific regions and novel effector candidates in Fusarium oxysporum f. sp. cepae

A reference-quality assembly of Fusarium oxysporum f. sp. cepae (Foc), the causative agent of onion basal rot has been generated along with genomes of additional pathogenic and non-pathogenic isolates of onion. Phylogenetic analysis confirmed a single origin of the Foc pathogenic lineage. Genome alignments with other F. oxysporum ff. spp. and non pathogens revealed high levels of syntenic conservation of core chromosomes but little synteny between lineage specific (LS) chromosomes. Four LS contigs in Foc totaling 3.9 Mb were designated as pathogen-specific (PS). A two-fold increase in segmental duplication events was observed between LS regions of the genome compared to within core regions or from LS regions to the core. RNA-seq expression studies identified candidate effectors expressed in planta, consisting of both known effector homologs and novel candidates. FTF1 and a subset of other transcription factors implicated in regulation of effector expression were found to be expressed in planta