Rarity of monodominance in hyperdiverse Amazonian forests.

Tropical forests are known for their high diversity. Yet, forest patches do occur in the tropics where a single tree species is dominant. Such "monodominant" forests are known from all of the main tropical regions. For Amazonia, we sampled the occurrence of monodominance in a massive, basin-wide database of forest-inventory plots from the Amazon Tree Diversity Network (ATDN). Utilizing a simple defining metric of at least half of the trees ≥ 10 cm diameter belonging to one species, we found only a few occurrences of monodominance in Amazonia, and the phenomenon was not significantly linked to previously hypothesized life history traits such wood density, seed mass, ectomycorrhizal associations, or Rhizobium nodulation. In our analysis, coppicing (the formation of sprouts at the base of the tree or on roots) was the only trait significantly linked to monodominance. While at specific locales coppicing or ectomycorrhizal associations may confer a considerable advantage to a tree species and lead to its monodominance, very few species have these traits. Mining of the ATDN dataset suggests that monodominance is quite rare in Amazonia, and may be linked primarily to edaphic factors

Fauna of euglossina (Hymenoptera: Apidae) from southwestern Amazonia, Acre, Brazil

Male orchid bees were collected between December 2005 and September 2006 in 11 forest areas of different sizes in the region of Rio Branco, Acre, Southwestern Amazonia, Brazil. The bees were attracted by 6 aromatic compounds and collected by insect nets and scent baited traps. A total of 3,675 males of Euglossina in 4 genera and 36 species were collected. Eulaema cingulata (Fabricius) was the most common (24.6%), followed by Eulaema meriana (Olivier) (14.6%), Euglossa amazonica Dressler (10.5%), Eulaema nigrita Lepeletier (10.5%) and Eulaema pseudocingulata (Oliveira) (7.2%). Cineole was the scent that attracted the greatest number of individuals (23.8%) and methyl salicylate the greatest number of species (28) for both methods of sampling. Thirty one bees of 9 species with pollinar orchid attached to their bodies were collected. The accumulative number of species stabilized after the 48th collection. Few species were abundant; the great majority were represented by less than 50 bees. The lack of standardized sample protocols limited very much the conclusions derived from comparisons among the majority of studies on Euglossina assemblages. However, the results presented here suggest that the State of Acre is very rich in those bees compared to other regions.Machos de abelhas Euglossina foram coletados entre dezembro de 2005 e setembro de 2006 em 11 áreas florestais de diferentes tamanhos na região de Rio Branco, Acre, Amazônia Sul-Ocidental. As abelhas foram atraídas por 6 substâncias odoríferas e coletadas com rede entomológica e armadilhas. Um total de 3.675 machos de Euglossina pertencentes a 4 gêneros e 36 espécies foi coletado. Eulaema cingulata (Fabricius) foi a espécie mais comum (24,6%), seguida por Eulaema meriana (Olivier) (14,6%), Euglossa amazonica Dressler (10,5%), Eulaema nigrita Lepeletier (10,5%) e Eulaema pseudocingulata (Oliveira) (7,2%). Cineol foi a substância que atraiu maior número de indivíduos (23,8%) e metil salicilato o maior número de espécies (28) para ambos os métodos de coleta. Foram coletados 31 indivíduos pertencentes a 9 espécies portando polinários. O número acumulado de espécies coletadas na região estabilizou a partir da 48ª coleta. Poucas espécies foram abundantes, a maioria representada por menos que 50 indivíduos. A falta de um protocolo amostral padronizado tem limitado comparações entre trabalhos realizados em diferentes regiões. Contudo, os resultados aqui apresentados indicam que o Acre apresenta elevada riqueza dessas abelhas

Composition, diversity and structure of vascular epiphytes in two contrasting Central Amazonian floodplain ecosystems

Research focusing on assemblages of vascular epiphytes in the Amazon are scarce. This is especially true for Amazonian floodplain forests, for which only two previous studies have been published. We compared composition, richness and structure of epiphyte assemblages in white-water and black-water floodplains (várzea and igapó) in Central Amazonia in order to close knowledge gaps concerning the distribution and richness of epiphytes. We established sixteen 25x25 m plots in each forest type, and counted and identified all species of vascular epiphytes occurring on trees with a diameter at breast height (DBH) ≥10 cm. We observed a clear distinction in epiphytic species composition (r2=0.83, p=0.001) and diversity (t=3.24, P=0.003) between the two environments, with 61.5 % of species being restricted to várzea, 22.9 % restricted to igapó and only 15.6 % common to both ecosystems. The floodplains were also structurally different for the most abundant species and those with the highest Epiphytic Importance Value (IVe). The diversity of trees did not influence the epiphyte diversity in either ecosystem. The forests were found to differ in the composition, diversity and structure of their epiphytic assemblages, which must be taken into account when designing conservation action plans for these ecosystems and for their vascular epiphytes

Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in Two Corynebacterium pseudotuberculosis Strains

Ruiz JC, D'Afonseca V, Silva A, et al. Evidence for Reductive Genome Evolution and Lateral Acquisition of Virulence Functions in Two Corynebacterium pseudotuberculosis Strains. PLoS ONE. 2011;6(4): e18551.Background: Corynebacterium pseudotuberculosis, a Gram-positive, facultative intracellular pathogen, is the etiologic agent of the disease known as caseous lymphadenitis (CL). CL mainly affects small ruminants, such as goats and sheep; it also causes infections in humans, though rarely. This species is distributed worldwide, but it has the most serious economic impact in Oceania, Africa and South America. Although C. pseudotuberculosis causes major health and productivity problems for livestock, little is known about the molecular basis of its pathogenicity. Methodology and Findings: We characterized two C. pseudotuberculosis genomes (Cp1002, isolated from goats; and CpC231, isolated from sheep). Analysis of the predicted genomes showed high similarity in genomic architecture, gene content and genetic order. When C. pseudotuberculosis was compared with other Corynebacterium species, it became evident that this pathogenic species has lost numerous genes, resulting in one of the smallest genomes in the genus. Other differences that could be part of the adaptation to pathogenicity include a lower GC content, of about 52%, and a reduced gene repertoire. The C. pseudotuberculosis genome also includes seven putative pathogenicity islands, which contain several classical virulence factors, including genes for fimbrial subunits, adhesion factors, iron uptake and secreted toxins. Additionally, all of the virulence factors in the islands have characteristics that indicate horizontal transfer. Conclusions: These particular genome characteristics of C. pseudotuberculosis, as well as its acquired virulence factors in pathogenicity islands, provide evidence of its lifestyle and of the pathogenicity pathways used by this pathogen in the infection process. All genomes cited in this study are available in the NCBI Genbank database (http://www.ncbi.nlm.nih.gov/genbank/) under accession numbers CP001809 and CP001829

A phylogenetic classification of the world’s tropical forests

Knowledge about the biogeographic affinities of the world’s tropical forests helps to better understand regional differences in forest structure, diversity, composition and dynamics. Such understanding will enable anticipation of region specific responses to global environmental change. Modern phylogenies, in combination with broad coverage of species inventory data, now allow for global biogeographic analyses that take species evolutionary distance into account. Here we present the first classification of the world’s tropical forests based on their phylogenetic similarity. We identify five principal floristic regions and their floristic relationships: (1) Indo-Pacific, (2) Subtropical, (3) African, (4) American, and (5) Dry forests. Our results do not support the traditional Neo- versus Palaeo-tropical forest division, but instead separate the combined American and African forests from their Indo-Pacific counterparts. We also find indications for the existence of a global dry forest region, with representatives in America, Africa, Madagascar and India. Additionally, a northern hemisphere Subtropical forest region was identified with representatives in Asia and America, providing support for a link between Asian and American northern hemisphere forests