Methods to Monitor and Quantify Autophagy in the Social Amoeba Dictyostelium discoideum

Autophagy is a eukaryotic catabolic pathway that degrades and recycles cellular components to maintain homeostasis. It can target protein aggregates, superfluous biomolecular complexes, dysfunctional and damaged organelles, as well as pathogenic intracellular microbes. Autophagy is a dynamic process in which the different stages from initiation to final degradation of cargo are finely regulated. Therefore, the study of this process requires the use of a palette of techniques, which are continuously evolving and whose interpretation is not trivial. Here, we present the social amoeba Dictyostelium discoideum as a relevant model to study autophagy. Several methods have been developed based on the tracking and observation of autophagosomes by microscopy, analysis of changes in expression of autophagy genes and proteins, and examination of the autophagic flux with various techniques. In this review, we discuss the pros and cons of the currently available techniques to assess autophagy in this organism

The High Cadence Transit Survey (HiTS): Compilation and Characterization of Light-curve Catalogs

Indexación: Scopus.J.M. acknowledges support from CONICYT-Chile through CONICYT-PCHA/Doctorado-Nacional/2014-21140892. J.M., F.F., G.C.V., and G.M. acknowledge support from the Ministry of Economy, Development, and Tourism’s Millennium Science Initiative through grant IC120009, awarded to the Millennium Institute of Astrophysics (MAS). F.F. acknowledges support from Conicyt through the Fondecyt Initiation into Research project No. 11130228. J.M., F.F., J.S.M., G.C.V., and S.G. acknowledge support from Basal Project PFB-03, Centro de Modelamiento Matemáico (CMM), Universidad de Chile. P.L. acknowledges support by Fondecyt through project #1161184. G.C.V. gratefully acknowledges financial support from CON-ICYT-Chile through FONDECYT postdoctoral grant number 3160747 and CONICYT-Chile and NSF through the Programme of International Cooperation project DPI201400090. P.H. acknowledges support from FONDECYT through grant 1170305. L.G. was supported in part by the US National Science Foundation under grant AST-1311862. G.M. acknowledges support from Conicyt through CONICYT-PCHA/Magís-terNacional/2016-22162353. Support for T.d.J. has been provided by US NSF grant AST-1211916, the TABASGO Foundation, and Gary and Cynthia Bengier. R.R.M. acknowledges partial support from BASAL Project PFB-06, as well as FONDECYT project N◦1170364. Powered@NLHPC: this research was supported by the High Performance Computing infrastructure of the National Laboratory for High Performance Computing (NLHPC), PIA ECM-02, CONICYT. This project used data obtained with the Dark Energy Camera (DECam), which was constructed by the Dark Energy Survey (DES) collaborating institutions: Argonne National Lab, the University of California Santa Cruz, the University of Cambridge, Centro de Investigaciones Energeticas, Medioambientales y Tecnologi-cas-Madrid, the University of Chicago, University College London, the DES-Brazil consortium, the University of Edinburgh, ETH-Zurich, the University of Illinois at Urbana-Champaign, Institut de Ciencies de l’Espai, Institut de Fisica d’Altes Energies, Lawrence Berkeley National Lab, Ludwig-Maximilians Universitat, the University of Michigan, the National Optical Astronomy Observatory, the University of Nottingham, Ohio State University, the University of Pennsylvania, the University of Portsmouth, SLAC National Lab, Stanford University, the University of Sussex, and Texas A&M University. Funding for DES, including DECam, has been provided by the U.S. Department of Energy, National Science Foundation, Ministry of Education and Science (Spain), Science and Technology Facilities Council (UK), Higher Education Funding Council (England), National Center for Supercomputing Applications, Kavli Institute for Cosmological Physics, Financia-dora de Estudos e Projetos, Fundação Carlos Chagas Filho de Amparo a Pesquisa, Conselho Nacional de Desenvolvimento Científico e Tecnológico and the Ministério da Ciência e Tecnologia (Brazil), the German Research Foundation-sponsored cluster of excellence “Origin and Structure of the universe,” and the DES collaborating institutions. Facility: CTIO:1.5 m (DECam).The High Cadence Transient Survey (HiTS) aims to discover and study transient objects with characteristic timescales between hours and days, such as pulsating, eclipsing, and exploding stars. This survey represents a unique laboratory to explore large etendue observations from cadences of about 0.1 days and test new computational tools for the analysis of large data. This work follows a fully data science approach, from the raw data to the analysis and classification of variable sources. We compile a catalog of ∼15 million object detections and a catalog of ∼2.5 million light curves classified by variability. The typical depth of the survey is 24.2, 24.3, 24.1, and 23.8 in the u, g, r, and i bands, respectively. We classified all point-like nonmoving sources by first extracting features from their light curves and then applying a random forest classifier. For the classification, we used a training set constructed using a combination of cross-matched catalogs, visual inspection, transfer/active learning, and data augmentation. The classification model consists of several random forest classifiers organized in a hierarchical scheme. The classifier accuracy estimated on a test set is approximately 97%. In the unlabeled data, 3485 sources were classified as variables, of which 1321 were classified as periodic. Among the periodic classes, we discovered with high confidence one δ Scuti, 39 eclipsing binaries, 48 rotational variables, and 90 RR Lyrae, and for the nonperiodic classes, we discovered one cataclysmic variable, 630 QSOs, and one supernova candidate. The first data release can be accessed in the project archive of HiTS (http://astro.cmm.uchile.cl/HiTS/). © 2018. The American Astronomical Society. All rights reserved.https://iopscience.iop.org/article/10.3847/1538-3881/aadfd

Scattering of the halo nucleus 11Be from a lead target at 3.5 times the Coulomb barrier energy

Angular distributions of quasielastic scattering and breakup of the neutron-rich halo nucleus 11Be on a 208Pb target at an incident energy of 140 MeV (about 3.5 times the Coulomb barrier) were measured at HIRFL-RIBLL. A strong suppression of the Coulomb nuclear interference peak is observed in the measured quasielastic scattering angular distribution. The result demonstrates for the first time the persistence of the strong breakup coupling effect reported so far for reaction systems involving neutron-halo nuclei at this relatively high incident energy. The measured quasielastic scattering cross sections are satisfactorily reproduced by continuum discretized coupled channel (CDCC) calculations as well as by the XCDCC calculations where the deformation of the 10Be core is taken into account. The angular and energy distributions of the 10Be fragments could also be well reproduced considering elastic breakup (CDCC and XCDCC) plus nonelastic breakup contributions, with the latter evaluated with the model by Ichimura, Austern and Vincent [1]. The comparison of the 10Be energy distributions with simple kinematical estimates evidence the presence of a significant post-acceleration effect which, in the (X)CDCC frameworks, is accounted for by continuum-continuum couplings.National Key Research and Development Program of China (Grant No. 2018YFA0404403)National Natural Science Foundation of China (Grant No. 11775013, No. 11947203, No. 11575256, and No. U1632138)Youth Innovation Promotion Association CAS (No. 2020411)Ministerio de Ciencia, Innovación y Universidades FIS2017-88410-PEuropean Union’s Horizon 2020 (Grant Agreement No. 654002

Tareas escolares en pandemia. Percepción parental de los cambios asociados a la digitalización de la educación

This descriptive-inferential research aims to compare the parental assessment of 1,787 families with respect to schoolwork in times of confinement according to the nationality and level of education of the families. The results show that immigrant families identify more changes in schoolwork in all aspects except for emotional exhaustion. In addition, the educational level of both parents has a significant impact on some study variables such as emotional distress, perceived increase in time spent on homework and promotion of the positive effects of homework.En la presente investigación de corte descriptivo-inferencial se pretende conocer la valoración parental de 1.787 familias respecto a la transformación que han experimentado las tareas escolares durante el confinamiento en función de la nacionalidad y el nivel de estudios de los progenitores. Los resultados ponen de manifiesto que las familias inmigrantes identifican más cambios en las tareas escolares en todos los aspectos, a excepción del desgaste emocional. Además, el nivel de estudios de ambos progenitores incide de forma significativa en algunas variables del estudio, como el malestar emocional, el aumento de tiempo percibido en las tareas o la promoción de los efectos positivos de los deberes

On the equivalence between Implicit Regularization and Constrained Differential Renormalization

Constrained Differential Renormalization (CDR) and the constrained version of Implicit Regularization (IR) are two regularization independent techniques that do not rely on dimensional continuation of the space-time. These two methods which have rather distinct basis have been successfully applied to several calculations which show that they can be trusted as practical, symmetry invariant frameworks (gauge and supersymmetry included) in perturbative computations even beyond one-loop order. In this paper, we show the equivalence between these two methods at one-loop order. We show that the configuration space rules of CDR can be mapped into the momentum space procedures of Implicit Regularization, the major principle behind this equivalence being the extension of the properties of regular distributions to the regularized ones.Comment: 16 page

A predictive model and risk factors for case fatality of covid-19

This study aimed to create an individualized analysis model of the risk of intensive care unit (ICU) admission or death for coronavirus disease 2019 (COVID-19) patients as a tool for the rapid clinical management of hospitalized patients in order to achieve a resilience of medical resources. This is an observational, analytical, retrospective cohort study with longitudinal follow-up. Data were collected from the medical records of 3489 patients diagnosed with COVID-19 using RT-qPCR in the period of highest community transmission recorded in Europe to date: February–June 2020. The study was carried out in in two health areas of hospital care in the Madrid region: the central area of the Madrid capital (Hospitales de Madrid del Grupo HM Hospitales (CH-HM), n = 1931) and the metropolitan area of Madrid (Hospital Universitario Príncipe de Asturias (MH-HUPA) n = 1558). By using a regression model, we observed how the different patient variables had unequal importance. Among all the analyzed variables, basal oxygen saturation was found to have the highest relative importance with a value of 20.3%, followed by age (17.7%), lymphocyte/leukocyte ratio (14.4%), CRP value (12.5%), comorbidities (12.5%), and leukocyte count (8.9%). Three levels of risk of ICU/death were established: low-risk level (20%). At the high-risk level, 13% needed ICU admission, 29% died, and 37% had an ICU–death outcome. This predictive model allowed us to individualize the risk for worse outcome for hospitalized patients affected by COVID-19

Intra‐clinothem variability in sedimentary texture and process regime recorded down slope profiles

Shelf‐margin clinothem successions can archive process interactions at the shelf to slope transition, and their architecture provides constraints on the interplay of factors that control basin‐margin evolution. However, detailed textural analysis and facies distributions from shelf to slope transitions remain poorly documented. This study uses quantitative grain‐size and sorting data from coeval shelf and slope deposits of a single clinothem that crops out along a 5 km long, dip‐parallel transect of the Eocene Sobrarbe Deltaic Complex (Ainsa Basin, south‐central Pyrenees, Spain). Systematic sampling of sandstone beds tied to measured sections has captured vertical and basinward changes in sedimentary texture and facies distributions at an intra‐clinothem scale. Two types of hyperpycnal flow‐related slope deposits, both rich in mica and terrestrial organic matter, are differentiated according to grain size, sorting and bed geometry: (i) sustained hyperpycnal flow deposits, which are physically linked to coarse channelized sediments in the shelf setting and which deposit sand down the complete slope profile; (ii) episodic hyperpycnal flow deposits, which are disconnected from, and incise into, shelf sands and which are associated with sediment bypass of the proximal slope and coarse‐grained sand deposition on the medial and distal slope. Both types of hyperpycnites are interbedded with relatively homogenous, organic‐free and mica‐free, well‐sorted, very fine‐grained sandstones, which are interpreted to be remobilized from wave‐dominated shelf environments; these wave‐dominated deposits are found only on the proximal and medial slope. Coarse‐grained sediment bypass into the deeper‐water slope settings is therefore dominated by episodic hyperpycnal flows, whilst sustained hyperpycnal flows and turbidity currents remobilizing wave‐dominated shelf deposits are responsible for the full range of grain sizes in the proximal and medial slope, thus facilitating clinoform progradation. This novel dataset highlights previously undocumented intra‐clinothem variability related to updip changes in the shelf process‐regime, which is therefore a key factor controlling downdip architecture and resulting sedimentary texture

Influence of Anodic Conditions on Self-ordered Growth of Highly Aligned Titanium Oxide Nanopores

Self-aligned nanoporous TiO2templates synthesized via dc current electrochemical anodization have been carefully analyzed. The influence of environmental temperature during the anodization, ranging from 2 °C to ambient, on the structure and morphology of the nanoporous oxide formation has been investigated, as well as that of the HF electrolyte chemical composition, its concentration and their mixtures with other acids employed for the anodization. Arrays of self-assembled titania nanopores with inner pores diameter ranging between 50 and 100 nm, wall thickness around 20–60 nm and 300 nm in length, are grown in amorphous phase, vertical to the Ti substrate, parallel aligned to each other and uniformly disordering distributed over all the sample surface. Additional remarks about the photoluminiscence properties of the titania nanoporous templates and the magnetic behavior of the Ni filled nanoporous semiconductor Ti oxide template are also included

Measurement of Bottom versus Charm as a Function of Transverse Momentum with Electron-Hadron Correlations in p+p Collisions at sqrt(s)=200 GeV

The momentum distribution of electrons from semi-leptonic decays of charm and bottom for mid-rapidity |y|<0.35 in p+p collisions at sqrt(s)=200 GeV is measured by the PHENIX experiment at the Relativistic Heavy Ion Collider (RHIC) over the transverse momentum range 2 < p_T < 7 GeV/c. The ratio of the yield of electrons from bottom to that from charm is presented. The ratio is determined using partial D/D^bar --> e^{+/-} K^{-/+} X (K unidentified) reconstruction. It is found that the yield of electrons from bottom becomes significant above 4 GeV/c in p_T. A fixed-order-plus-next-to-leading-log (FONLL) perturbative quantum chromodynamics (pQCD) calculation agrees with the data within the theoretical and experimental uncertainties. The extracted total bottom production cross section at this energy is \sigma_{b\b^bar}= 3.2 ^{+1.2}_{-1.1}(stat) ^{+1.4}_{-1.3}(syst) micro b.Comment: 432 authors, 6 pages text, 3 figures. Submitted to Phys. Rev. Lett. Plain text data tables for the points plotted in figures for this and previous PHENIX publications are (or will be) publicly available at http://www.phenix.bnl.gov/papers.htm

Anisotropic flow of charged hadrons, pions and (anti-)protons measured at high transverse momentum in Pb-Pb collisions at sNN=2.76\sqrt{s_{\rm NN}}=2.76 TeV

The elliptic, $v_2$, triangular, $v_3$, and quadrangular, $v_4$, azimuthal anisotropic flow coefficients are measured for unidentified charged particles, pions and (anti-)protons in Pb-Pb collisions at $\sqrt{s_{\rm NN}} = 2.76$ TeV with the ALICE detector at the Large Hadron Collider. Results obtained with the event plane and four-particle cumulant methods are reported for the pseudo-rapidity range $|\eta|<0.8$ at different collision centralities and as a function of transverse momentum, $p_{\rm T}$, out to $p_{\rm T}=20$ GeV/$c$. The observed non-zero elliptic and triangular flow depends only weakly on transverse momentum for $p_{\rm T}>8$ GeV/$c$. The small $p_{\rm T}$ dependence of the difference between elliptic flow results obtained from the event plane and four-particle cumulant methods suggests a common origin of flow fluctuations up to $p_{\rm T}=8$ GeV/$c$. The magnitude of the (anti-)proton elliptic and triangular flow is larger than that of pions out to at least $p_{\rm T}=8$ GeV/$c$ indicating that the particle type dependence persists out to high $p_{\rm T}$.Comment: 16 pages, 5 captioned figures, authors from page 11, published version, figures at http://aliceinfo.cern.ch/ArtSubmission/node/186