Distributions of geohopanoids in peat: Implications for the use of hopanoid-based proxies in natural archives

This is the final version of the article. Available from Elsevier via the DOI in this record.Hopanoids are pentacyclic triterpenoids produced by a wide range of bacteria. Within modern settings, hopanoids mostly occur in the biological 17β,21β(H) configuration. However, in some modern peatlands, the C31 hopane is present as the ‘thermally-mature’ 17α,21β(H) stereoisomer. This has traditionally been ascribed to isomerisation at the C-17 position catalysed by the acidic environment. However, recent work has argued that temperature and/or hydrology also exert a control upon hopane isomerisation. Such findings complicate the application of geohopanoids as palaeoenvironmental proxies. However, due to the small number of peats that have been studied, as well as the lack of peatland diversity sampled, the environmental controls regulating geohopanoid isomerisation remain poorly constrained. Here, we undertake a global approach to investigate the occurrence, distribution and diagenesis of geohopanoids within peat, combining previously published and newly generated data (n = 395) from peatlands with a wide temperature (−1 to 27 °C) and pH (3–8) range. Our results indicate that peats are characterised by a wide range of geohopanoids. However, the C31 hopane and C32 hopanoic acid (and occasionally the C32 hopanol) typically dominate. C32 hopanoic acids occur as αβ- and ββ-stereoisomers, with the ββ-isomer typically dominating. In contrast, C31 hopanes occur predominantly as the αβ-stereoisomer. These two observations collectively suggest that isomerisation is not inherited from an original biological precursor (i.e. biohopanoids). Using geohopanoid ββ/(αβ + ββ) indices, we demonstrate that the abundance of αβ-hopanoids is strongly influenced by the acidic environment, and we observe a significant positive correlation between C31 hopane isomerisation and pH (n = 94, r2 = 0.64, p 1 pH unit) and longer-term (>1 kyr) variation. Overall, our findings demonstrate the potential of geohopanoids to provide unique new insights into understanding depositional environments and interpreting terrestrial organic matter sources in the geological record.This research was funded through the advanced ERC grant ‘The Greenhouse Earth System’ (T-GRES. Project reference: 340923). RDP acknowledges the Royal Society Wolfson Research Merit Award. YZ thanks the National Natural Science Foundation of China (Project reference: 41372033). ELM acknowledges the Philip Leverhulme Prize. We also thank the NERC Life Sciences Mass Spectrometry Facility (Bristol) for analytical support and D. Atkinson for help with the sample preparation. GNI thanks Janet Dehmer and Philippe Schaeffer for helpful discussions. Members of the T-GRES Peat Database collaborators are M.J. Amesbury, H. Biester, R. Bindler, J. Blewett, M.A. Burrows, D. del Castillo Torres, F.M. Chambers, A.D. Cohen, S.J. Feakins, M. Gałka, A. Gallego-Sala, L. Gandois, D.M. Gray, P.G. Hatcher, E.N. Honorio Coronado, P.D.M. Hughes, A. Huguet, M. Könönen, F. Laggoun-Défarge O. Lähteenoja, M. Lamentowicz, R. Marchant, X. Pontevedra-Pombal, C. Ponton, A. Pourmand, A.M. Rizzuti, L. Rochefort, J. Schellekens, F. De Vleeschouwer. Finally, we thank Darci Rush, Phil Meyers and an anonymous reviewer for their comments and thoughtful suggestions which greatly improved this manuscript

Deglacial changes in flow and frontal structure through the Drake Passage

© 2017 Elsevier B.V. The oceanic gateways of the Drake Passage and the Agulhas Current are critical locations for the inflow of intermediate-depth water masses to the Atlantic, which contribute to the shallow return flow that balances the export of deep water from the North Atlantic. The thermohaline properties of northward flowing intermediate water are ultimately determined by the inflow of water through oceanic gateways. Here, we focus on the less well-studied “Cold Water Route” through the Drake Passage. We present millennially-resolved bottom current flow speed and sea surface temperature records downstream of the Drake Passage spanning the last 25,000 yr. We find that prior to 15 ka, bottom current flow speeds at sites in the Drake Passage region were dissimilar and there was a marked anti-phasing between sea surface temperatures at sites upstream and downstream of the Drake Passage. After 14 ka, we observe a remarkable convergence of flow speeds coupled with a sea surface temperature phase change at sites upstream and downstream of Drake Passage. We interpret this convergence as evidence for a significant southward shift of the sub-Antarctic Front from a position north of Drake Passage. This southward shift increased the through-flow of water from the Pacific, likely reducing the density of Atlantic Intermediate Water. The timing of the southward shift in the sub-Antarctic Front is synchronous with a major re-invigoration of Atlantic Meridional Overturning Circulation, with which, we argue, it may be linked

Sea ice dynamics across the Mid-Pleistocene transition in the Bering Sea.

Sea ice and associated feedback mechanisms play an important role for both long- and short-term climate change. Our ability to predict future sea ice extent, however, hinges on a greater understanding of past sea ice dynamics. Here we investigate sea ice changes in the eastern Bering Sea prior to, across, and after the Mid-Pleistocene transition (MPT). The sea ice record, based on the Arctic sea ice biomarker IP25 and related open water proxies from the International Ocean Discovery Program Site U1343, shows a substantial increase in sea ice extent across the MPT. The occurrence of late-glacial/deglacial sea ice maxima are consistent with sea ice/land ice hysteresis and land-glacier retreat via the temperature-precipitation feedback. We also identify interactions of sea ice with phytoplankton growth and ocean circulation patterns, which have important implications for glacial North Pacific Intermediate Water formation and potentially North Pacific abyssal carbon storage

Mid-Pleistocene climate transition drives net mass loss from rapidly uplifting St. Elias Mountains, Alaska

Erosion, sediment production and routing on a tectonically active continental margin reflect both tectonic and climatic processes; partitioning the relative importance of these processes remains controversial. Gulf of Alaska contains a preserved sedimentary record of Yakutat Terrane collision with North America. Because tectonic convergence in the coastal St. Elias orogen has been roughly constant for 6 Myr, variations in its eroded sediments preserved in the offshore Surveyor Fan constrain a budget of tectonic material influx, erosion, and sediment output. Seismically imaged sediment volumes calibrated with chronologies derived from Integrated Ocean Drilling Program boreholes shows that erosion accelerated in response to Northern Hemisphere glacial intensification (~2.7 Ma) and that the 900-km long Surveyor Channel inception appears to correlate with this event. However, tectonic influx exceeded integrated sediment efflux over the interval 2.8-1.2 Ma. Volumetric erosion accelerated following the onset of quasi-periodic (~100-kyr) glacial cycles in the mid-Pleistocene climate transition (1.2-0.7 Ma). Since then erosion and transport of material out of the orogen has outpaced tectonic influx by 50-80%. Such a rapid net mass loss explains apparent increases in exhumation rates inferred onshore from exposure dates and mapped out-of-sequence fault patterns. The 1.2 Myr mass budget imbalance must relax back toward equilibrium in balance with tectonic influx over the time scale of orogenic wedge response (Myrs). The St. Elias Range provides a key example of how active orogenic systems respond to transient mass fluxes, and the possible influence of climate driven erosive processes that diverge from equilibrium on the million-year scale

Why the South Pacific Convergence Zone is diagonal

During austral summer, the majority of precipitation over the Pacific Ocean is concentrated in the South Pacific Convergence Zone (SPCZ). The surface boundary conditions required to support the diagonally (northwest-southeast) oriented SPCZ are determined through a series of experiments with an atmospheric general circulation model. Continental configuration and orography do not have a significant influence on SPCZ orientation and strength. The key necessary boundary condition is the zonally asymmetric component of the sea surface temperature (SST) distribution. This leads to a strong subtropical anticyclone over the southeast Pacific that, on its western flank, transports warm moist air from the equator into the SPCZ region. This moisture then intensifies (diagonal) bands of convection that are initiated by regions of ascent and reduced static stability ahead of the cyclonic vorticity in Rossby waves that are refracted toward the westerly duct over the equatorial Pacific. The climatological SPCZ is comprised of the superposition of these diagonal bands of convection. When the zonally asymmetric SST component is reduced or removed, the subtropical anticyclone and its associated moisture source is weakened. Despite the presence of Rossby waves, significant moist convection is no longer triggered; the SPCZ disappears. The diagonal SPCZ is robust to large changes (up to +/-6 degC) in absolute SST (i.e. where the SST asymmetry is preserved). Extreme cooling (change less than -6 degC) results in a weaker and more zonal SPCZ, due to decreasing atmospheric temperature, moisture content and convective available potential energy

Holocene history of the 79°N ice shelf reconstructed from epishelf lake and uplifted glaciomarine sediments

Nioghalvfjerdsbrae, or 79°N Glacier, is the largest marine-terminating glacier draining the Northeast Greenland Ice Stream (NEGIS). In recent years, its ∼70 km long fringing ice shelf (hereafter referred to as the 79°N ice shelf) has thinned, and a number of small calving events highlight its sensitivity to climate warming. With the continued retreat of the 79°N ice shelf and the potential for accelerated discharge from NEGIS, which drains 16 % of the Greenland Ice Sheet (GrIS), it has become increasingly important to understand the long-term history of the ice shelf in order to put the recent changes into perspective and to judge their long-term significance. Here, we reconstruct the Holocene dynamics of the 79°N ice shelf by combining radiocarbon dating of marine molluscs from isostatically uplifted glaciomarine sediments with a multi-proxy investigation of two sediment cores recovered from Blåsø, a large epishelf lake 2-13 km from the current grounding line of 79°N Glacier. Our reconstructions suggest that the ice shelf retreated between 8.5 and 4.4 kacalBP, which is consistent with previous work charting grounding line and ice shelf retreat to the coast as well as open marine conditions in Nioghalvfjerdsbrae. Ice shelf retreat followed a period of enhanced atmospheric and ocean warming in the Early Holocene. Based on our detailed sedimentological, microfaunal, and biomarker evidence, the ice shelf reformed at Blåsø after 4.4 kacalBP, reaching a thickness similar to present by 4.0 kacalBP. Reformation of the ice shelf coincides with decreasing atmospheric temperatures, the increased dominance of Polar Water, a reduction in Atlantic Water, and (near-)perennial sea-ice cover on the adjacent continental shelf. Along with available climate archives, our data indicate that the 79°N ice shelf is susceptible to collapse at mean atmospheric and ocean temperatures ∼2 °C warmer than present, which could be achieved by the middle of this century under some emission scenarios. Finally, the presence of "marine"markers in the uppermost part of the Blåsø sediment cores could record modern ice shelf thinning, although the significance and precise timing of these changes requires further work

Measurement of the cross-section and charge asymmetry of WW bosons produced in proton-proton collisions at s=8\sqrt{s}=8 TeV with the ATLAS detector

This paper presents measurements of the $W^+ \rightarrow \mu^+\nu$ and $W^- \rightarrow \mu^-\nu$ cross-sections and the associated charge asymmetry as a function of the absolute pseudorapidity of the decay muon. The data were collected in proton--proton collisions at a centre-of-mass energy of 8 TeV with the ATLAS experiment at the LHC and correspond to a total integrated luminosity of 20.2~\mbox{fb^{-1}}. The precision of the cross-section measurements varies between 0.8% to 1.5% as a function of the pseudorapidity, excluding the 1.9% uncertainty on the integrated luminosity. The charge asymmetry is measured with an uncertainty between 0.002 and 0.003. The results are compared with predictions based on next-to-next-to-leading-order calculations with various parton distribution functions and have the sensitivity to discriminate between them.Comment: 38 pages in total, author list starting page 22, 5 figures, 4 tables, submitted to EPJC. All figures including auxiliary figures are available at https://atlas.web.cern.ch/Atlas/GROUPS/PHYSICS/PAPERS/STDM-2017-13

Human Antigen-Specific Regulatory T Cells Generated by T Cell Receptor Gene Transfer

Therapies directed at augmenting regulatory T cell (Treg) activities in vivo as a systemic treatment for autoimmune disorders and transplantation may be associated with significant off-target effects, including a generalized immunosuppression that may compromise beneficial immune responses to infections and cancer cells. Adoptive cellular therapies using purified expanded Tregs represents an attractive alternative to systemic treatments, with results from animal studies noting increased therapeutic potency of antigen-specific Tregs over polyclonal populations. However, current methodologies are limited in terms of the capacity to isolate and expand a sufficient quantity of endogenous antigen-specific Tregs for therapeutic intervention. Moreover, FOXP3+ Tregs fall largely within the CD4+ T cell subset and are thus routinely MHC class II-specific, whereas class I-specific Tregs may function optimally in vivo by facilitating direct tissue recognition.To overcome these limitations, we have developed a novel means for generating large numbers of antigen-specific Tregs involving lentiviral T cell receptor (TCR) gene transfer into in vitro expanded polyclonal natural Treg populations. Tregs redirected with a high-avidity class I-specific TCR were capable of recognizing the melanoma antigen tyrosinase in the context of HLA-A*0201 and could be further enriched during the expansion process by antigen-specific reactivation with peptide loaded artificial antigen presenting cells. These in vitro expanded Tregs continued to express FOXP3 and functional TCRs, and maintained the capacity to suppress conventional T cell responses directed against tyrosinase, as well as bystander T cell responses. Using this methodology in a model tumor system, murine Tregs designed to express the tyrosinase TCR effectively blocked antigen-specific effector T cell (Teff) activity as determined by tumor cell growth and luciferase reporter-based imaging.These results support the feasibility of class I-restricted TCR transfer as a promising strategy to redirect the functional properties of Tregs and provide for a more efficacious adoptive cell therapy

Patterns and mechanisms of early Pliocene warmth

About five to four million years ago, in the early Pliocene epoch, Earth had a warm, temperate climate. The gradual cooling that followed led to the establishment of modern temperature patterns, possibly in response to a decrease in atmospheric CO2 concentration, of the order of 100 parts per million, towards preindustrial values. Here we synthesize the available geochemical proxy records of sea surface temperature and show that, compared with that of today, the early Pliocene climate had substantially lower meridional and zonal temperature gradients but similar maximum ocean temperatures. Using an Earth system model, we show that none of the mechanisms currently proposed to explain Pliocene warmth can simultaneously reproduce all three crucial features. We suggest that a combination of several dynamical feedbacks underestimated in the models at present, such as those related to ocean mixing and cloud albedo, may have been responsible for these climate conditions