Editorial: The aging decision-maker: advances in understanding the impact of cognitive change on decision-making

No abstract availabl

Development of Soil Compaction Analysis Software (SCAN) Integrating a Low Cost GPS Receiver and Compactometer

A software for soil compaction analysis (SCAN) has been developed for evaluating the compaction states using the data from the GPS as well as a compactometer attached on the roller. The SCAN is distinguished from other previous software for intelligent compaction (IC) in that it can use the results from various types of GPS positioning methods, and it also has an optimal structure for remotely managing the large amounts of data gathered from numerous rollers. For this, several methods were developed: (1) improving the accuracy of low cost GPS receiver’s positioning results; (2) modeling the trajectory of a moving roller using a GPS receiver’s results and linking it with the data from the compactometer; and (3) extracting the information regarding the compaction states of the ground from the modeled trajectory, using spatial analysis methods. The SCAN was verified throughout various field compaction tests, and it has been confirmed that it can be a very effective tool in evaluating field compaction states

Distinctions in gastric cancer gene expression signatures derived from laser capture microdissection versus histologic macrodissection

<p>Abstract</p> <p>Background</p> <p>Gastric cancer samples obtained by histologic macrodissection contain a relatively high stromal content that may significantly influence gene expression profiles. Differences between the gene expression signature derived from macrodissected gastric cancer samples and the signature obtained from isolated gastric cancer epithelial cells from the same biopsies using laser-capture microdissection (LCM) were evaluated for their potential experimental biases.</p> <p>Methods</p> <p>RNA was isolated from frozen tissue samples of gastric cancer biopsies from 20 patients using both histologic macrodissection and LCM techniques. RNA from LCM was subject to an additional round of T7 RNA amplification. Expression profiling was performed using Affymetrix HG-U133A arrays. Genes identified in the expression signatures from each tissue processing method were compared to the set of genes contained within chromosomal regions found to harbor copy number aberrations in the tumor samples by array CGH and to proteins previously identified as being overexpressed in gastric cancer.</p> <p>Results</p> <p>Genes shown to have increased copy number in gastric cancer were also found to be overexpressed in samples obtained by macrodissection (LS <it>P </it>value < 10^-5), but not in array data generated using microdissection. A set of 58 previously identified genes overexpressed in gastric cancer was also enriched in the gene signature identified by macrodissection (LS <it>P </it>< 10^-5), but not in the signature identified by microdissection (LS <it>P </it>= 0.013). In contrast, 66 genes previously reported to be underexpressed in gastric cancer were enriched in the gene signature identified by microdissection (LS <it>P </it>< 10^-5), but not in the signature identified by macrodissection (LS <it>P </it>= 0.89).</p> <p>Conclusions</p> <p>The tumor sampling technique biases the microarray results. LCM may be a more sensitive collection and processing method for the identification of potential tumor suppressor gene candidates in gastric cancer using expression profiling.</p

Set2 methyltransferase facilitates DNA replication and promotes genotoxic stress responses through MBF-dependent transcription

Chromatin modification through histone H3 lysine 36 methylation by the SETD2 tumour suppressor plays a key role in maintaining genome stability. Here we describe a role for Set2-dependent H3K36 methylation in facilitating DNA replication and the transcriptional responses to both replication stress and DNA damage through promoting MluI Cell Cycle Box (MCB) binding factor (MBF) complex-dependent transcription in fission yeast. Set2 loss leads to reduced MBF-dependent ribonucleotide reductase (RNR) expression, reduced deoxyribonucleoside triphosphate (dNTP) synthesis, altered replication origin firing and to a checkpoint-dependent S-phase delay. Accordingly, prolonged S-phase in the absence of Set2 is suppressed by increasing dNTP synthesis. Further, H3K36 is di- and tri-methylated at these MBF gene promoters, and Set2 loss leads to reduced MBF binding and transcription in response to genotoxic stress. Together, these findings provide new insights into how H3K36 methylation facilitates DNA replication and promotes genotoxic stress responses in fission yeast

A G1-like state allows HIV-1 to bypass SAMHD1 restriction in macrophages

An unresolved question is how HIV‐1 achieves efficient replication in terminally differentiated macrophages despite the restriction factor SAMHD1. We reveal inducible changes in expression of cell cycle‐associated proteins including MCM2 and cyclins A, E, D1/D3 in macrophages, without evidence for DNA synthesis or mitosis. These changes are induced by activation of the Raf/MEK/ERK kinase cascade, culminating in upregulation of CDK1 with subsequent SAMHD1 T592 phosphorylation and deactivation of its antiviral activity. HIV infection is limited to these G1‐like phase macrophages at the single‐cell level. Depletion of SAMHD1 in macrophages decouples the association between infection and expression of cell cycle‐associated proteins, with terminally differentiated macrophages becoming highly susceptible to HIV‐1. We observe both embryo‐derived and monocyte‐derived tissue‐resident macrophages in a G1‐like phase at frequencies approaching 20%, suggesting how macrophages sustain HIV‐1 replication in vivo. Finally, we reveal a SAMHD1‐dependent antiretroviral activity of histone deacetylase inhibitors acting via p53 activation. These data provide a basis for host‐directed therapeutic approaches aimed at limiting HIV‐1 burden in macrophages that may contribute to curative interventions

Measurement of the reduced scattering coefficient of turbid media using single fiber reflectance spectroscopy: fiber diameter and phase function dependence

This paper presents a relationship between the intensity collected by a single fiber reflectance device (RSF) and the fiber diameter (dfib) and the reduced scattering coefficient ( μs′) and phase function (p(θ)) of a turbid medium. Monte Carlo simulations are used to identify and model a relationship between RSF and dimensionless scattering ( μs′dfib). For μs′dfib > 10 we find that RSF is insensitive to p(θ). A solid optical phantom is constructed with μs′ ≈ 220 mm−1 and is used to convert RSF of any turbid medium to an absolute scale. This calibrated technique provides accurate estimates of μs′ over a wide range ([0.05 – 8] mm−1) for a range of dfib ([0.2 – 1] mm)

Multi-UAV Allocation Framework for predictive crime deterrence and data acquisition

The recent decline in the number of police and security force personnel has raised a serious security issue that could lead to reduced public safety and delayed response to crimes in urban areas. This may be alleviated in part by utilizing micro or small unmanned aerial vehicles (UAVs) and their high-mobility on-board sensors in conjunction with machine-learning techniques such as neural networks to offer better performance in predicting times and places that are high-risk and deterring crimes. The key to the success of such operation lies in the suitable placement of UAVs. This paper proposes a multi-UAV allocation framework for predictive crime deterrence and data acquisition that consists of the overarching methodology, a problem formulation, and an allocation method that work with a prediction model using a machine learning approach. In contrast to previous studies, our framework provides the most effective arrangement of UAVs for maximizing the chance to apprehend offenders whilst also acquiring data that will help improve the performance of subsequent crime prediction. This paper presents the system architecture assumed in this study, followed by a detailed description of the methodology, the formulation of the problem, and the UAV allocation method of the proposed framework. Our framework is tested using a real-world crime dataset to evaluate its performance with respect to the expected number of crimes deterred by the UAV patrol. Furthermore, to address the engineering practice of the proposed framework, we discuss the feasibility of the simulated deployment scenario in terms of energy consumption and the relationship between data analysis and crime prediction

High speed spectral domain optical coherence tomography for retinal imaging at 500,000 A‑lines per second

We present a new development of ultrahigh speed spectral domain optical coherence tomography (SDOCT) for human retinal imaging at 850 nm central wavelength by employing two high-speed line scan CMOS cameras, each running at 250 kHz. Through precisely controlling the recording and reading time periods of the two cameras, the SDOCT system realizes an imaging speed at 500,000 A-lines per second, while maintaining both high axial resolution (~8 μm) and acceptable depth ranging (~2.5 mm). With this system, we propose two scanning protocols for human retinal imaging. The first is aimed to achieve isotropic dense sampling and fast scanning speed, enabling a 3D imaging within 0.72 sec for a region covering 4x4 mm2. In this case, the B-frame rate is 700 Hz and the isotropic dense sampling is 500 A-lines along both the fast and slow axes. This scanning protocol minimizes the motion artifacts, thus making it possible to perform two directional averaging so that the signal to noise ratio of the system is enhanced while the degradation of its resolution is minimized. The second protocol is designed to scan the retina in a large field of view, in which 1200 A-lines are captured along both the fast and slow axes, covering 10 mm2, to provide overall information about the retinal status. Because of relatively long imaging time (4 seconds for a 3D scan), the motion artifact is inevitable, making it difficult to interpret the 3D data set, particularly in a way of depth-resolved en-face fundus images. To mitigate this difficulty, we propose to use the relatively high reflecting retinal pigmented epithelium layer as the reference to flatten the original 3D data set along both the fast and slow axes. We show that the proposed system delivers superb performance for human retina imaging

It's definitely not Alzheimer's: perceived benefits and drawbacks of a mild cognitive impairment diagnosis

Objectives. To understand the perceived benefits and drawbacks of a mild cognitive impairment (MCI) diagnosis from the perspective of those living with the label. Methods. Participants were included if they had recently (within 6 months) received a MCI diagnosis. We also recruited close family members to gain their perspectives. Each was interviewed separately with a semi-structured topic guide covering three areas: (1) experience of cognitive impairments and changes in the individual; (2) impact of cognitive impairment(s) on daily activities and social relationships; and (3) experience of the diagnosis process and living with the label. Transcribed interviews were stored in Nvivo". Grounded theory procedures of memo writing, open coding, constant comparison, and focused coding were used to derive conceptual themes. Results. Eighteen dyads were interviewed.The overarching themes surrounding diagnosis benefits and drawbacks were as follows: (1) emotional impact of the diagnosis; (2) practical benefits and limitations of the diagnosis, in terms of (a) understanding one’s symptoms and (b) access to clinical support. Although participants were glad to have clinical support in place, they expressed frustration at the lack of clarity, and the lack of available treatments for MCI. Consequently, living with MCI can be characterized as an ambivalent experience. Conclusion. As a clinical label,MCI appears to have little explanatory power for people living with cognitive difficulties. Work is needed to clarify how clinicians and patients communicate about MCI, and how people can be helped to live well with the label. Despite an emerging body of prognostic studies, people with MCI are likely to continue living with significant uncertainty