Zn uptake, translocation and grain Zn loading in rice (Oryza sativa L.) genotypes selected for Zn deficiency tolerance and high grain Zn

Zn deficiency is a widespread problem in rice (Oryza sativa L.) grown under flooded conditions, limiting growth and grain Zn accumulation. Genotypes with Zn deficiency tolerance or high grain Zn have been identified in breeding programmes, but little is known about the physiological mechanisms conferring these traits. A protocol was developed for growing rice to maturity in agar nutrient solution (ANS), with optimum Zn-sufficient growth achieved at 1.5 μM ZnSO4.7H2O. The redox potential in ANS showed a decrease from +350 mV to −200 mV, mimicking the reduced conditions of flooded paddy soils. In subsequent experiments, rice genotypes contrasting for Zn deficiency tolerance and grain Zn were grown in ANS with sufficient and deficient Zn to assess differences in root uptake of Zn, root-to-shoot Zn translocation, and in the predominant sources of Zn accumulation in the grain. Zn efficiency of a genotype was highly influenced by root-to-shoot translocation of Zn and total Zn uptake. Translocation of Zn from root to shoot was more limiting at later growth stages than at the vegetative stage. Under Zn-sufficient conditions, continued root uptake during the grain-filling stage was the predominant source of grain Zn loading in rice, whereas, under Zn-deficient conditions, some genotypes demonstrated remobilization of Zn from shoot and root to grain in addition to root uptake. Understanding the mechanisms of grain Zn loading in rice is crucial in selecting high grain Zn donors for target-specific breeding and also to establish fertilizer and water management strategies for achieving high grain Z

Measurement of isotopically-exchangeable Zn in Zn-deficient paddy soil

The changes in soil chemistry following submergence of a soil for rice production result in zinc (Zn) being immobilized in very insoluble forms. Consequently, Zn deficiency is widespread in rice crops and in human populations that subsist on rice. We explored the use of stable isotopic dilution assays for assessing Zn dynamics in submerged paddy soil with two types of strongly Zn-deficient soil for rice cultivation in the Philippines. We optimized the isotope enrichment, electrolyte and equilibration time to measure isotopically-exchangeable Zn (E-values) without changing redox conditions. Available Zn was rapidly and strongly immobilized following submergence, which was controlled by CO2 accumulation. Addition of the isotopic tracer before submergence produced unreliable E-values because irreversible immobilization of the tracer progressed faster than isotopic exchange. Addition of the tracer to already reduced soil produced stable E-values for tracer–soil contact of up to 1 week. Longer periods produced unreliable E-values because of continuing irreversible fixation of the tracer. We discuss the implications for applications of isotopic dilution methods to measure trace-element dynamics in submerged soil

Identification of orthologous regions associated with tissue growth under water-limited conditions

Plant recovery from early season drought is related to the amount of biomass retained during stress and biomass production after the end of stress. Reduction in leaf expansion is one of the first responses to water deficit. It is assumed that the control of tissue development under water deficit contributes to traits such as early vigor, as well as maintenance of growth of reproductive organs. To dissect the underlying mechanisms controlling tissue expansion under water-limited conditions, we used a multilevel approach combining quantitative genetics and genomics. To identify orthologous genetic regions controlling tissue growth under water-limited conditions a series of QTL mapping and microarray gene expression studies were conducted in rice and maize. Results of differentially expressed genes from microarray experiments, QTLs and candidate genes related to growth in the different species are compared on consensus maps (within species) and then on synteny maps (between species), to identify common genetic regions between rice and maize

Using isotope dilution assays to understand speciation changes in Cd, Zn, Pb and Fe in a soil model system under simulated flooding conditions

Flooded soils are systems with complex chemistry and understanding the mechanisms that control the mobility and bioavailability of metals in these soils is important for their management. This work uses stable metal multi-element isotopic dilution combined with sequential extraction assays to help understand the changes in solid and solution speciation of Cd, Fe, Pb and Zn in a contaminated soil following submergence. However, it is necessary to ensure that the isotopic dilution principles, originally developed for aerobic soils, are not compromised; in particular due to the presence of non-labile colloids in the solution phase. In particular, no studies examining the validity of these assays in systems where rapid pH and Eh changes are occurring due to fermentation reactions have been published. Thus sucrose (0.42% and 1.26% added C) was used as a carbon source to stimulate bacterial mediated fermentation reactions allowing changes in Cd, Zn, Fe and Pb isotopic exchangeability, speciation and solution chemistry to be examined after 10, 20 and 42 days of submergence. Without the addition of added C, submergence for 42 days only produced minor changes in the speciation of the metals in solid or solution phases. However, the presence of easily labile carbon produced significant responses depending on the quantity of C added. Assessments of whether fermentation products caused over-estimation of the isotopically exchangeable pool of metals (E-values) were made by measuring concentrations with and without a resin purification step. Results showed generally good agreement over a pH range of 4–7 for Pb, Cd, Zn and Fe and demonstrate that fermentation by-products do not induce the formation of non-exchangeable metal colloids. E-value concentrations were compared with fractions extracted using a modified Tessier sequential extraction. With no carbonate phases present in the soils, the E-values for Cd, Zn, Fe and Pb compared favourably with the concentrations of metal present in the combined solution, exchangeable and specifically adsorbed fractions. This provided additional evidence that the conditions for the isotopic dilution assays were not violated as these fractions should be isotopically exchangeable. Combining results from the different treatments and stages of the reduction process, strong pH dependence was found for the isotopically exchangeable and the solution pools of Cd, Zn and Pb

Enhancing phosphorus and zinc acquisition efficiency in rice: a critical review of root traits and their potential utility in rice breeding

Background: Rice is the world's most important cereal crop and phosphorus (P) and zinc (Zn) deficiency are major constraints to its production. Where fertilizer is applied to overcome these nutritional constraints it comes at substantial cost to farmers and the efficiency of fertilizer use is low. Breeding crops that are efficient at acquiring P and Zn from native soil reserves or fertilizer sources has been advocated as a cost-effective solution, but would benefit from knowledge of genes and mechanisms that confer enhanced uptake of these nutrients by roots. Scope: This review discusses root traits that have been linked to P and Zn uptake in rice, including traits that increase mobilization of P/Zn from soils, increase the volume of soil explored by roots or root surface area to recapture solubilized nutrients, enhance the rate of P/Zn uptake across the root membrane, and whole-plant traits that affect root growth and nutrient capture. In particular, this review focuses on the potential for these traits to be exploited through breeding programmes to produce nutrient-efficient crop cultivars. Conclusions: Few root traits have so far been used successfully in plant breeding for enhanced P and Zn uptake in rice or any other crop. Insufficient genotypic variation for traits or the failure to enhance nutrient uptake under realistic field conditions are likely reasons for the limited success. More emphasis is needed on field studies in mapping populations or association panels to identify those traits and underlying genes that are able to enhance nutrient acquisition beyond the level already present in most cultivars.T. J. Rose, S. M. Impa, M. T. Rose, J. Pariasca-Tanaka, A. Mori, S. Heuer, S. E. Johnson-Beebout and M. Wissuw