Data Mining und XML: Modularisierung und Automatisierung von Verarbeitungsschritten

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Analyse zeitabhängiger Daten durch Data-Mining-Verfahren

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Cardiovascular impairment in Shiga-toxin-2-induced experimental hemolytic-uremic syndrome: a pilot study.

INTRODUCTION: Hemolytic-uremic syndrome (HUS) can occur as a systemic complication of infection with Shiga toxin (Stx)-producing Escherichia coli (STEC). Most well-known aspects of the pathophysiology are secondary to microthrombotic kidney disease including hemolytic anemia and thrombocytopenia. However, extrarenal manifestations, such as cardiac impairment, have also been reported. We have investigated whether these cardiac abnormalities can be reproduced in a murine animal model, in which administration of Stx, the main virulence factor of STEC, is used to induce HUS. METHODS: Mice received either one high or multiple low doses of Stx to simulate the (clinically well-known) different disease courses. Cardiac function was evaluated by echocardiography and analyses of biomarkers in the plasma (troponin I and brain natriuretic peptide). RESULTS: All Stx-challenged mice showed reduced cardiac output and depletion of intravascular volume indicated by a reduced end-diastolic volume and a higher hematocrit. Some mice exhibited myocardial injury (measured as increases in cTNI levels). A subset of mice challenged with either dosage regimen showed hyperkalemia with typical electrocardiographic abnormalities. DISCUSSION: Myocardial injury, intravascular volume depletion, reduced cardiac output, and arrhythmias as a consequence of hyperkalemia may be prognosis-relevant disease manifestations of HUS, the significance of which should be further investigated in future preclinical and clinical studies

Rice genotype differences in tolerance of zinc-deficient soils: evidence for the importance of root-induced changes in the rhizosphere

The Supplementary Material for this article can be found online at: http://journal.frontiersin.org/article/10.3389/fpls.2015.01160Zinc (Zn) deficiency is a major constraint to rice production and Zn is also often deficient in humans with rice-based diets. Efforts to breed more Zn-efficient rice are constrained by poor understanding of the mechanisms of tolerance to deficiency. Here we assess the contributions of root growth and root Zn uptake efficiency, and we seek to explain the results in terms of specific mechanisms. We made a field experiment in a highly Zn-deficient rice soil in the Philippines with deficiency-tolerant and -sensitive genotypes, and measured growth, Zn uptake and root development. We also measured the effect of planting density. Tolerant genotypes produced more crown roots per plant and had greater uptake rates per unit root surface area; the latter was at least as important as root number to overall tolerance. Tolerant and sensitive genotypes took up more Zn per plant at greater planting densities. The greater uptake per unit root surface area, and the planting density effect can only be explained by root-induced changes in the rhizosphere, either solubilizing Zn, or neutralizing a toxin that impedes Zn uptake (possibly HCO − 3 HCO3− or Fe2+), or both. Traits for these and crown root number are potential breeding targets.This research was funded by a grant from the UK's Biotechnology and Biological Sciences Research Council (BBSRC, Grant Ref. BB/J011584/1) under the Sustainable Crop Production Research for International Development (SCPRID) programme, a joint multi-national initiative of BBSRC, the UK Government's Department for International Development (DFID) and (through a grant awarded to BBSRC) the Bill & Melinda Gates Foundation. Support to AKN in the form of a fellowship awarded by the Japan Society for the Promotion of Science (JSPS) is gratefully acknowledged

Wissensmanagement - quo vadis? Case Positions zur Umsetzung in den Unternehmen ; eine selektive Bestandsaufnahme

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Complete genome sequence of Lutibacter profoundi LP1T isolatet from an Arctic deep-sea hydrothermal vent system

Lutibacter profundi LP1T within the family Flavobacteriaceae was isolated from a biofilm growing on the surface of a black smoker chimney at the Loki’s Castle vent field, located on the Arctic Mid-Ocean Ridge. The complete genome of L. profundi LP1T is the first genome to be published within the genus Lutibacter. L. profundi LP1T consists of a single 2,966,978 bp circular chromosome with a GC content of 29.8%. The genome comprises 2,537 protein-coding genes, 40 tRNA species and 2 rRNA operons. The microaerophilic, organotrophic isolate contains genes for all central carbohydrate metabolic pathways. However, genes for the oxidative branch of the pentose-phosphate-pathway, the glyoxylate shunt of the tricarboxylic acid cycle and the ATP citrate lyase for reverse TCA are not present. L. profundi LP1T utilizes starch, sucrose and diverse proteinous carbon sources. In accordance, the genome harbours 130 proteases and 104 carbohydrate-active enzymes, indicating a specialization in degrading organic matter. Among a small arsenal of 24 glycosyl hydrolases, which offer the possibility to hydrolyse diverse poly- and oligosaccharides, a starch utilization cluster was identified. Furthermore, a variety of enzymes may be secreted via T9SS and contribute to the hydrolytic variety of the microorganism. Genes for gliding motility are present, which may enable the bacteria to move within the biofilm. A substantial number of genes encoding for extracellular polysaccharide synthesis pathways, curli fibres and attachment to surfaces could mediate adhesion in the biofilm and may contribute to the biofilm formation. In addition to aerobic respiration, the complete denitrification pathway and genes for sulphide oxidation e.g. sulphide:quinone reductase are present in the genome. sulphide:quinone reductase and denitrification may serve as detoxification systems allowing L. profundi LP1T to thrive in a sulphide and nitrate enriched environment. The information gained from the genome gives a greater insight in the functional role of L. profundi LP1T in the biofilm and its adaption strategy in an extreme environment.publishedVersio

Gamma-ray absorption in the binary system LS I +61 303

Treballs Finals de Grau de Física, Facultat de Física, Universitat de Barcelona, Curs: 2017, Tutor: Marc Ribó GomisLS I +61 303 is a gamma-ray binary, composed of a compact object of unknow nature and a massive star, which has been detected in the range of very high energy (VHE) gamma-rays. These gamma-rays can interact with the optical photons coming from the star. In each interaction, they are absorbed through pair creation [gamma gamma gives] e-e+. This absorption depends strongly on the possible geometries of the system and on the energy of the emitted gamma-ray photon. Therefore, we can study the modulation of the transmission with the orbital phase and with the photon energy. In this work we have made a Fortran code to calculate the transmission of LS I +61 303 system assuming that VHE gamma-rays are produced at the position of the compact object and that we have a pointlike massive star. We have done this study for two inclinations, one corresponding to a neutron star compact object and the other to a black hole. We have observed that the maximum absorption occurs slightly before periastron and it is more intense for large inclinations. The energy range with more absorption is between 100 GeV and 10 TeV. We have compared our results with Dubus (2006) and we have observed a signifcant difference on the absorption for energies above 10 TeV. We have studied the orbital phase of the maximum absorption as a function of the inclination. We have concluded that, if the observed light curve only depended on the transmission, we could know, through this dependence, the nature of the compact objec

Superior Root Hair Formation Confers Root Efficiency in Some, But Not All, Rice Genotypes upon P Deficiency

Root hairs are a low-cost way to extend root surface area (RSA), water and nutrient acquisition. This study investigated to what extend variation exists for root hair formation in rice in dependence of genotype, phosphorus (P) supply, growth medium, and root type. In general, genotypic variation was found for three root hair properties: root hair length, density, and longevity. In low P nutrient solution more than twofold genotypic difference was detected for root hair length while only onefold variation was found in low P soil. These differences were mostly due to the ability of some genotypes to increase root hair length in response to P deficiency. In addition, we were able to show that a higher proportion of root hairs remain viable even in mature, field-grown plants under low P conditions. All investigated root hair parameters exhibited high correlations across root types which were always higher in the low P conditions compared to the high P controls. Therefore we hypothesize that a low P response leads to a systemic signal in the entire root system. The genotype DJ123 consistently had the longest root hairs under low P conditions and we estimated that, across the field-grown root system, root hairs increased the total RSA by 31% in this genotype. This would explain why DJ123 is considered to be very root efficient in P uptake and suggests that DJ123 should be utilized as a donor in breeding for enhanced P uptake. Surprisingly, another root and P efficient genotype seemed not to rely on root hair growth upon P deficiency and therefore must contain different methods of low P adaptation. Genotypic ranking of root hair properties did change substantially with growth condition highlighting the need to phenotype plants in soil-based conditions or at least to validate results obtained in solution-based growth conditions

Soil CO2 venting as one of the mechanisms for tolerance of Zn deficiency by rice in flooded soils.

We sought to explain rice (Oryza sativa) genotype differences in tolerance of zinc (Zn) deficiency in flooded paddy soils and the counter-intuitive observation, made in earlier field experiments, that Zn uptake per plant increases with increasing planting density. We grew tolerant and intolerant genotypes in a Zn-deficient flooded soil at high and low planting densities, and found (a) plant Zn concentrations and growth increased with planting density and more so in the tolerant genotype, whereas the concentrations of other nutrients decreased, indicating a specific effect on Zn uptake; (b) the effects of planting density and genotype on Zn uptake could only be explained if the plants induced changes in the soil to make Zn more soluble; and (c) the genotype and planting density effects were both associated with decreases in dissolved CO2 in the rhizosphere soil solution and resulting increases in pH. We suggest the increases in pH caused solubilisation of soil Zn by dissolution of alkali-soluble, Zn-complexing organic ligands from soil organic matter. We conclude that differences in venting of soil CO2 through root aerenchyma were responsible for the genotype and planting density effects

Phosphorus Efficient Phenotype of Rice

The ideal phenotype to cope with P deficiency is suggested to be a larger root system, both in terms of length and foraging area, coupled with a high capacity for P solubilization from compounds exuded from roots. Greater soil exploration results in a large number of roots in the top soil, longer roots in general with more cortical aerenchyma, more and longer root hairs, and a shift in mycorrhizal and bacterial colonization. However, these assumptions often result from experiments in highly controlled, sterile and soil-free conditions using model plants or single ecotypes where results are then extrapolated to all genotypes and plant species. In recent years this generalization has been questioned. Here, we summarize recent rice research analyzing the natural diversity of rice root systems under P deficiency. Interestingly, while some of the high yielding genotypes do show the expected, large root system phenotype, some have a surprisingly small root system—as little as a quarter of that of the large root system varieties—but achieve similar yield and P uptake under P deficiency. This effect has recently been termed root efficiency, which we discuss in this chapter in conjunction with root foraging traits