Speckle Reduction with Attenuation Compensation for Skin OCT Images Enhancement

The enhancement of skin image in optical coherence tomography (OCT) imaging can help dermatologists to investigate tissue layers more accurately, hence the more efficient diagnosis. In this paper, we propose an image enhancement technique including speckle reduction, attenuation compensation and cleaning to improve the quality of OCT skin images. A weighted median filter is designed to reduce the level of speckle noise while preserving the contrast. A novel border detection technique is designed to outline the main skin layers, stratum corneum, epidermis and dermis. A model of the light attenuation is then used to estimate the absorption coefficient of epidermis and dermis layers and compensate the brightness of the structures at deeper levels. The undesired part of the image is removed using a simple cleaning algorithm. The performance of the algorithm has been evaluated visually and numerically using the commonly used no-reference quality metrics. The results shows an improvement in the quality of the images. Keywords: Optical coherence tomography (OCT), Skin, Image enhancement, Speckle reduction, Attenuation compensation

Anti-Spoof Reliable Biometry of Fingerprints Using En-Face Optical Coherence Tomography

Optical coherence tomography (OCT) is a relatively new imaging technology which can produce high-reso- lution images of three-dimensional structures. OCT has been mainly used for medical applications such as for ophthalmology and dermatology. In this study we demonstrate its capability in providing much more re- liable biometry identification of fingerprints than conventional methods. We prove that OCT can serve se- cure control of genuine fingerprints as it can detect if extra layers are placed above the finger. This can pre- vent with a high probability, intruders to a secure area trying to foul standard systems based on imaging the finger surface. En-Face OCT method is employed and recommended for its capability of providing not only the axial succession of layers in depth, but the en-face image that allows the traditional pattern identification. Another reason for using such OCT technology is that it is compatible with dynamic focus and therefore can provide enhanced transversal resolution and sensitivity. Two En-Face OCT systems are used to evaluate the need for high resolution and conclusions are drawn in terms of the most potential commercial route to ex- ploitation

Optimization of excitation of fiber Fabry–Perot tunable filters used in swept lasers using a phase-correction method

In this paper, we investigate a phase correction method for compensation of the nonlinearity of conventional wavelength swept laser sources based on a fiber Fabry-Perot tunable filter as a wavelength selective element. A triangular waveform signal is commonly used to drive the filter. We however extract the zero crossings from the interferograms and modify the shape of the triangular signal accordingly. This algorithm was tested for different values of the optical path length difference (OPD) in the interferometer set-up. Significant compensation for the nonlinearity of the filter was obtained

Automatic ROI detection and classification of the Achilles tendon ultrasound images

Ultrasound (US) imaging plays an important role in medical imaging technologies. It is widely used because of its ease of use and low cost compared to other imaging techniques. Specifically, ultrasound imaging is used in the detection of the Achilles Tendon (AT) pathologies as it detects important details. For example, US imaging is used for AT rupture that affects about 1 in 5,000 people worldwide. Decision support systems are important in medical imaging, as they assist radiologist in detecting probable diagnoses and lesions. The work presented in this paper concerns the development of a software application to detect changes in the AT ultrasound images and subsequently classify them into normal or abnormal. We propose an approach that fully automates the detection for the Region of Interest (ROI) in ultrasound AT images. The original image is divided into six blocks with 1 cm size in each direction. The blocks lie inside the vulnerable area considered as our ROI. The proposed system achieved an accuracy of 97.21%

Placing meta-stable states of consciousness within the predictive coding hierarchy: The deceleration of the accelerated prediction error.

While many studies have linked prediction errors and event related potentials at a single processing level, few consider how these responses interact across levels. In response, we present a factorial analysis of a multi-level oddball task - the local-global task - and we explore it when participants are sedated versus recovered. We found that the local and global levels in fact interact. This is of considerable current interest, since it has recently been argued that the MEEG response evoked by the global effect corresponds to a distinct processing mode that moves beyond predictive coding. This interaction suggests that the two processing modes are not distinct. Additionally, we observed that sedation modulates this interaction, suggesting that conscious awareness may not be completely restricted to a single (global) processing level

In vivo measurement of skin surface strain and sub-surface layer deformation induced by natural tissue stretching.

Stratum corneum and epidermal layers change in terms of thickness and roughness with gender, age and anatomical site. Knowledge of the mechanical and tribological properties of skin associated with these structural changes are needed to aid in the design of exoskeletons, prostheses, orthotics, body mounted sensors used for kinematics measurements and in optimum use of wearable on-body devices. In this case study, optical coherence tomography (OCT) and digital image correlation (DIC) were combined to determine skin surface strain and sub-surface deformation behaviour of the volar forearm due to natural tissue stretching. The thickness of the epidermis together with geometry changes of the dermal-epidermal junction boundary were calculated during change in the arm angle, from flexion (90°) to full extension (180°). This posture change caused an increase in skin surface Lagrange strain, typically by 25% which induced considerable morphological changes in the upper skin layers evidenced by reduction of epidermal layer thickness (20%), flattening of the dermal-epidermal junction undulation (45-50% reduction of flatness being expressed as Ra and Rz roughness profile height change) and reduction of skin surface roughness Ra and Rz (40-50%). The newly developed method, DIC combined with OCT imaging, is a powerful, fast and non-invasive methodology to study structural skin changes in real time and the tissue response provoked by mechanical loading or stretching

Arterial spin labelling shows functional depression of non-lesion tissue in chronic Wernicke’s aphasia

Behavioural impairment post-stroke is a consequence of structural damage and altered functional network dynamics. Hypoperfusion of intact neural tissue is frequently observed in acute stroke, indicating reduced functional capacity of regions outside the lesion. However, cerebral blood flow is rarely investigated in chronic stroke. This study investigated cerebral blood flow in individuals with chronic Wernicke’s aphasia and examined the relationship between lesion, cerebral blood flow and neuropsychological impairment. Arterial spin labelling cerebral blood flow imaging and structural MRIs were collected in 12 individuals with chronic Wernicke’s aphasia and 13 age-matched control participants. Joint independent component analysis (jICA) investigated the relationship between structural lesion and hypoperfusion. Partial correlations explored the relationship between lesion, hypoperfusion and language measures. Joint ICA revealed significant differences between the control and WA groups reflecting a large area of structural lesion in the left posterior hemisphere and an associated area of hypoperfusion extending into grey matter surrounding the lesion. Small regions of remote cortical hypoperfusion were observed, ipsilateral and contralateral to the lesion. Significant correlations were observed between the neuropsychological measures (naming, repetition, reading and semantic association) and the jICA component of interest in the WA group. Additional ROI analyses found a relationship between perfusion surrounding the core lesion and the same neuropsychological measures

Energy-based dissolution simulation using SPH sampling

A novel unified particle-based method is proposed for real-time dissolution simulation that is fast, predictable, independent of sampling resolution, and visually plausible. The dissolution model is derived from collision theory and integrated into a smoothed particle hydrodynamics fluid solver. Dissolution occurs when a solute is submerged in solvent. Physical laws govern the local excitation of solute particles based on kinetic energy: when the local excitation energy exceeds a user-specified threshold (activation energy), the particle will be dislodged from the solid. Solute separation during dissolution is handled using a new Graphics Processing Unit (GPU)-based region growing method. The use of smoothed particle hydrodynamics sampling for both solute and solvent guarantees a predictable and smooth dissolution process and provides user control of the volume change during the phase transition. A mathematical relationship between the activation energy and dissolution time allows for intuitive artistic control over the global dissolution rate. We demonstrate this method using a number of practical examples, including antacid pills dissolving in water, hydraulic erosion of nonhomogeneous terrains, and melting

An overview of methods to mitigate artifacts in optical coherence tomography imaging of the skin

Background: Optical coherence tomography (OCT) of skin delivers three-dimensional images of tissue microstructures. Although OCT imaging offers a promising high-resolution modality, OCT images suffer from some artifacts that lead to misinterpretation of tissue structures. Therefore, an overview of methods to mitigate artifacts in OCT imaging of the skin is of paramount importance. Speckle, intensity decay, and blurring are three major artifacts in OCT images. Speckle is due to the low coherent light source used in the configuration of OCT. Intensity decay is a deterioration of light with respect to depth, and blurring is the consequence of deficiencies of optical components. Method: Two speckle reduction methods (one based on artificial neural network and one based on spatial compounding), an attenuation compensation algorithm (based on Beer-Lambert law) and a deblurring procedure (using deconvolution), are described. Moreover, optical properties extraction algorithm based on extended Huygens-Fresnel (EHF) principle to obtain some additional information from OCT images are discussed. Results: In this short overview, we summarize some of the image enhancement algorithms for OCT images which address the abovementioned artifacts. The results showed a significant improvement in the visibility of the clinically relevant features in the images. The quality improvement was evaluated using several numerical assessment measures. Conclusion: Clinical dermatologists benefit from using these image enhancement algorithms to improve OCT diagnosis and essentially function as a noninvasive optical biopsy

The value of ultrahigh resolution OCT in dermatology - delineating the dermo-epidermal junction, capillaries in the dermal papillae and vellus hairs

Optical coherence tomography (OCT) imaging of the skin is gaining recognition and is increasingly applied to dermatological research. A key dermatological parameter inferred from an OCT image is the epidermal (Ep) thickness as a thickened Ep can be an indicator of a skin disease. Agreement in the literature on the signal characters of Ep and the subjacent skin layer, the dermis (D), is evident. Ambiguities of the OCT signal interpretation in the literatue is however seen for the transition region between the Ep and D, which from histology is known as the dermo-epidermal junction (DEJ); a distinct junction comprised of the lower surface of a single cell layer in epidermis (the stratum basale) connected to an even thinner membrane (the basement membrane). The basement membrane is attached to the underlying dermis. In this work, we investigate the impact of an improved axial and lateral resolution on the applicability of OCT for imaging of the skin. To this goal, OCT images are compared produced by a commercial OCT system (Vivosight from Michaelson Diagnostics) and by an in-house built ultrahigh resolution (UHR-) OCT system for dermatology. In 11 healthy volunteers, we investigate the DEJ signal characteristics. We perform a detailed analysis of the dark (low) signal band clearly seen for UHR-OCT in the DEJ region where we, by using a transition function, find the signal transition of axial sub-resolution character, which can be directly attributed to the exact location of DEJ, both in normal (thin/hairy) and glabrous (thick) skin. To our knowledge no detailed delineating of the DEJ in the UHR-OCT image has previously been reported, despite many publications within this field. For selected healthy volunteers, we investigate the dermal papillae and the vellus hairs and identify distinct features that only UHR-OCT can resolve. Differences are seen in tracing hairs of diameter below 20 ?m, and in imaging the dermal papillae where, when utilising the UHR-OCT, capillary structures are identified in the hand palm, not previously reported in OCT studies and specifically for glabrous skin not reported in any other in vivo optical imaging studies