Cis-regulatory basis of sister cell type divergence in the vertebrate retina

Multicellular organisms evolved via repeated functional divergence of transcriptionally related sister cell types, but the mechanisms underlying sister cell type divergence are not well understood. Here, we study a canonical pair of sister cell types, retinal photoreceptors and bipolar cells, to identify the ke

Optimal Process Design of Commercial-Scale Amine-Based CO2 Capture Plants

Reactive absorption with an aqueous solution of amines in an absorber/stripper loop is the most mature technology for postcombustion CO2 capture (PCC). However, most of the commercial-scale CO2 capture plant designs that have been reported in the open literature are based on values of CO2 loadings and/or solvent circulation rates without an openly available techno-economic consideration. As a consequence, most of the reported designs may be suboptimal, and some of them appear to be unrealistic from practical and operational viewpoints. In this paper, four monoethanolamine (MEA) based CO2 capture plants have been optimally designed for both gas-fired and coal-fired power plants based on process and economic analyses. We have found that the optimum lean CO2 loading for MEA-based CO2 capture plants that can service commercial-scale power plants, whether natural-gas-fired or coal-fired, is about 0.2 mol/mol for absorber and stripper columns packed with Sulzer Mellapak 250Y structured packing. Also, the optimum liquid/gas ratio for a natural gas combined cycle (NGCC) power plant with a flue gas composition of approximately 4 mol % CO2 is about 0.96, while the optimum liquid/gas ratio for a pulverized-coal-fired (PC) power plant can range from 2.68 to 2.93 for a flue gas having a CO2 composition that ranges from 12.38 to 13.50 mol %

Techno-economic process design of a commercial-scale amine-based CO2 capture system for natural gas combined cycle power plant with exhaust gas recirculation

Post-combustion CO2 capture systems are gaining more importance as a means of reducing escalating greenhouse gas emissions. Moreover, for natural gas-fired power generation systems, exhaust gas recirculation is a method of enhancing the CO2 concentration in the lean flue gas. The present study reports the design and scale-up of four different cases of an amine-based CO2 capture system at 90% capture rate with 30 wt.% aqueous solution of MEA. The design results are reported for a natural gas-fired combined cycle system with a gross power output of 650 MWe without EGR and with EGR at 20%, 35% and 50% EGR percentage. A combined process and economic analysis is implemented to identify the optimum designs for the different amine-based CO2 capture plants. For an amine-based CO2 capture plant with a natural gas-fired combined cycle without EGR, an optimum liquid to gas ratio of 0.96 is estimated. Incorporating EGR at 20%, 35% and 50%, results in optimum liquid to gas ratios of 1.22, 1.46 and 1.90, respectively. These results suggest that a natural gas-fired power plant with exhaust gas recirculation will result in lower penalties in terms of the energy consumption and costs incurred on the amine-based CO2 capture plant

Massively parallel cis-regulatory analysis in the mammalian central nervous system

Cis-regulatory elements (CREs, e.g., promoters and enhancers) regulate gene expression, and variants within CREs can modulate disease risk. Next-generation sequencing has enabled the rapid generation of genomic data that predict the locations of CREs, but a bottleneck lies in functionally interpreting these data. To address this issue, massively parallel reporter assays (MPRAs) have emerged, in which barcoded reporter libraries are introduced into cells, and the resulting barcoded transcripts are quantified by next-generation sequencing. Thus far, MPRAs have been largely restricted to assaying short CREs in a limited repertoire of cultured cell types. Here, we present two advances that extend the biological relevance and applicability of MPRAs. First, we adapt exome capture technology to instead capture candidate CREs, thereby tiling across the targeted regions and markedly increasing the length of CREs that can be readily assayed. Second, we package the library into adeno-associated virus (AAV), thereby allowing delivery to target organs in vivo. As a proof of concept, we introduce a capture library of about 46,000 constructs, corresponding to roughly 3500 DNase I hypersensitive (DHS) sites, into the mouse retina by ex vivo plasmid electroporation and into the mouse cerebral cortex by in vivo AAV injection. We demonstrate tissue-specific cis-regulatory activity of DHSs and provide examples of high-resolution truncation mutation analysis for multiplex parsing of CREs. Our approach should enable massively parallel functional analysis of a wide range of CREs in any organ or species that can be infected by AAV, such as nonhuman primates and human stem cell-derived organoids

Measurement of the polarisation of W bosons produced with large transverse momentum in pp collisions at sqrt(s) = 7 TeV with the ATLAS experiment

This paper describes an analysis of the angular distribution of W->enu and W->munu decays, using data from pp collisions at sqrt(s) = 7 TeV recorded with the ATLAS detector at the LHC in 2010, corresponding to an integrated luminosity of about 35 pb^-1. Using the decay lepton transverse momentum and the missing transverse energy, the W decay angular distribution projected onto the transverse plane is obtained and analysed in terms of helicity fractions f0, fL and fR over two ranges of W transverse momentum (ptw): 35 < ptw < 50 GeV and ptw > 50 GeV. Good agreement is found with theoretical predictions. For ptw > 50 GeV, the values of f0 and fL-fR, averaged over charge and lepton flavour, are measured to be : f0 = 0.127 +/- 0.030 +/- 0.108 and fL-fR = 0.252 +/- 0.017 +/- 0.030, where the first uncertainties are statistical, and the second include all systematic effects.Comment: 19 pages plus author list (34 pages total), 9 figures, 11 tables, revised author list, matches European Journal of Physics C versio

Observation of a new chi_b state in radiative transitions to Upsilon(1S) and Upsilon(2S) at ATLAS

The chi_b(nP) quarkonium states are produced in proton-proton collisions at the Large Hadron Collider (LHC) at sqrt(s) = 7 TeV and recorded by the ATLAS detector. Using a data sample corresponding to an integrated luminosity of 4.4 fb^-1, these states are reconstructed through their radiative decays to Upsilon(1S,2S) with Upsilon->mu+mu-. In addition to the mass peaks corresponding to the decay modes chi_b(1P,2P)->Upsilon(1S)gamma, a new structure centered at a mass of 10.530+/-0.005 (stat.)+/-0.009 (syst.) GeV is also observed, in both the Upsilon(1S)gamma and Upsilon(2S)gamma decay modes. This is interpreted as the chi_b(3P) system.Comment: 5 pages plus author list (18 pages total), 2 figures, 1 table, corrected author list, matches final version in Physical Review Letter

Search for displaced vertices arising from decays of new heavy particles in 7 TeV pp collisions at ATLAS

We present the results of a search for new, heavy particles that decay at a significant distance from their production point into a final state containing charged hadrons in association with a high-momentum muon. The search is conducted in a pp-collision data sample with a center-of-mass energy of 7 TeV and an integrated luminosity of 33 pb^-1 collected in 2010 by the ATLAS detector operating at the Large Hadron Collider. Production of such particles is expected in various scenarios of physics beyond the standard model. We observe no signal and place limits on the production cross-section of supersymmetric particles in an R-parity-violating scenario as a function of the neutralino lifetime. Limits are presented for different squark and neutralino masses, enabling extension of the limits to a variety of other models.Comment: 8 pages plus author list (20 pages total), 8 figures, 1 table, final version to appear in Physics Letters

Measurement of the inclusive isolated prompt photon cross-section in pp collisions at sqrt(s)= 7 TeV using 35 pb-1 of ATLAS data

A measurement of the differential cross-section for the inclusive production of isolated prompt photons in pp collisions at a center-of-mass energy sqrt(s) = 7 TeV is presented. The measurement covers the pseudorapidity ranges |eta|<1.37 and 1.52<=|eta|<2.37 in the transverse energy range 45<=E_T<400GeV. The results are based on an integrated luminosity of 35 pb-1, collected with the ATLAS detector at the LHC. The yields of the signal photons are measured using a data-driven technique, based on the observed distribution of the hadronic energy in a narrow cone around the photon candidate and the photon selection criteria. The results are compared with next-to-leading order perturbative QCD calculations and found to be in good agreement over four orders of magnitude in cross-section.Comment: 7 pages plus author list (18 pages total), 2 figures, 4 tables, final version published in Physics Letters