Elephant Search with Deep Learning for Microarray Data Analysis

Even though there is a plethora of research in Microarray gene expression data analysis, still, it poses challenges for researchers to effectively and efficiently analyze the large yet complex expression of genes. The feature (gene) selection method is of paramount importance for understanding the differences in biological and non-biological variation between samples. In order to address this problem, a novel elephant search (ES) based optimization is proposed to select best gene expressions from the large volume of microarray data. Further, a promising machine learning method is envisioned to leverage such high dimensional and complex microarray dataset for extracting hidden patterns inside to make a meaningful prediction and most accurate classification. In particular, stochastic gradient descent based Deep learning (DL) with softmax activation function is then used on the reduced features (genes) for better classification of different samples according to their gene expression levels. The experiments are carried out on nine most popular Cancer microarray gene selection datasets, obtained from UCI machine learning repository. The empirical results obtained by the proposed elephant search based deep learning (ESDL) approach are compared with most recent published article for its suitability in future Bioinformatics research.Comment: 12 pages, 5 Tabl

Traveling Salesman Problem

The idea behind TSP was conceived by Austrian mathematician Karl Menger in mid 1930s who invited the research community to consider a problem from the everyday life from a mathematical point of view. A traveling salesman has to visit exactly once each one of a list of m cities and then return to the home city. He knows the cost of traveling from any city i to any other city j. Thus, which is the tour of least possible cost the salesman can take? In this book the problem of finding algorithmic technique leading to good/optimal solutions for TSP (or for some other strictly related problems) is considered. TSP is a very attractive problem for the research community because it arises as a natural subproblem in many applications concerning the every day life. Indeed, each application, in which an optimal ordering of a number of items has to be chosen in a way that the total cost of a solution is determined by adding up the costs arising from two successively items, can be modelled as a TSP instance. Thus, studying TSP can never be considered as an abstract research with no real importance

Metaheuristic design of feedforward neural networks: a review of two decades of research

Over the past two decades, the feedforward neural network (FNN) optimization has been a key interest among the researchers and practitioners of multiple disciplines. The FNN optimization is often viewed from the various perspectives: the optimization of weights, network architecture, activation nodes, learning parameters, learning environment, etc. Researchers adopted such different viewpoints mainly to improve the FNN's generalization ability. The gradient-descent algorithm such as backpropagation has been widely applied to optimize the FNNs. Its success is evident from the FNN's application to numerous real-world problems. However, due to the limitations of the gradient-based optimization methods, the metaheuristic algorithms including the evolutionary algorithms, swarm intelligence, etc., are still being widely explored by the researchers aiming to obtain generalized FNN for a given problem. This article attempts to summarize a broad spectrum of FNN optimization methodologies including conventional and metaheuristic approaches. This article also tries to connect various research directions emerged out of the FNN optimization practices, such as evolving neural network (NN), cooperative coevolution NN, complex-valued NN, deep learning, extreme learning machine, quantum NN, etc. Additionally, it provides interesting research challenges for future research to cope-up with the present information processing era

Learning enhancement of radial basis function network with particle swarm optimization

Back propagation (BP) algorithm is the most common technique in Artificial Neural Network (ANN) learning, and this includes Radial Basis Function Network. However, major disadvantages of BP are its convergence rate is relatively slow and always being trapped at the local minima. To overcome this problem, Particle Swarm Optimization (PSO) has been implemented to enhance ANN learning to increase the performance of network in terms of convergence rate and accuracy. In Back Propagation Radial Basis Function Network (BP-RBFN), there are many elements to be considered. These include the number of input nodes, hidden nodes, output nodes, learning rate, bias, minimum error and activation/transfer functions. These elements will affect the speed of RBF Network learning. In this study, Particle Swarm Optimization (PSO) is incorporated into RBF Network to enhance the learning performance of the network. Two algorithms have been developed on error optimization for Back Propagation of Radial Basis Function Network (BP-RBFN) and Particle Swarm Optimization of Radial Basis Function Network (PSO-RBFN) to seek and generate better network performance. The results show that PSO-RBFN give promising outputs with faster convergence rate and better classifications compared to BP-RBFN

A Comprehensive Survey on Particle Swarm Optimization Algorithm and Its Applications

Particle swarm optimization (PSO) is a heuristic global optimization method, proposed originally by Kennedy and Eberhart in 1995. It is now one of the most commonly used optimization techniques. This survey presented a comprehensive investigation of PSO. On one hand, we provided advances with PSO, including its modifications (including quantum-behaved PSO, bare-bones PSO, chaotic PSO, and fuzzy PSO), population topology (as fully connected, von Neumann, ring, star, random, etc.), hybridization (with genetic algorithm, simulated annealing, Tabu search, artificial immune system, ant colony algorithm, artificial bee colony, differential evolution, harmonic search, and biogeography-based optimization), extensions (to multiobjective, constrained, discrete, and binary optimization), theoretical analysis (parameter selection and tuning, and convergence analysis), and parallel implementation (in multicore, multiprocessor, GPU, and cloud computing forms). On the other hand, we offered a survey on applications of PSO to the following eight fields: electrical and electronic engineering, automation control systems, communication theory, operations research, mechanical engineering, fuel and energy, medicine, chemistry, and biology. It is hoped that this survey would be beneficial for the researchers studying PSO algorithms

Literature Review on Big Data Analytics Methods

Companies and industries are faced with a huge amount of raw data, which have information and knowledge in their hidden layer. Also, the format, size, variety, and velocity of generated data bring complexity for industries to apply them in an efficient and effective way. So, complexity in data analysis and interpretation incline organizations to deploy advanced tools and techniques to overcome the difficulties of managing raw data. Big data analytics is the advanced method that has the capability for managing data. It deploys machine learning techniques and deep learning methods to benefit from gathered data. In this research, the methods of both ML and DL have been discussed, and an ML/DL deployment model for IOT data has been proposed

An Efficient Model for Data Classification Based on SVM Grid Parameter Optimization and PSO Feature Weight Selection

The support vector machine (SVM) is a classifier with different applications due to its perfect experimental performance compared to other machine learning algorithms. It has been used mostly in pattern recognition, fault diagnosis, and text categorization. The performance of SVM is extremely dependent on the sufficient setting of its parameters such as SVM max-iteration and SVM kernel-type. Therefore, the choice of suitable initial parameters of SVM will result in a good performance and classification result. This paper introduces a new schema for optimizing SVM parameters using grid search and particle swarm optimization PSO feature weighting. The experimental results demonstrate that the new method obtained a high accuracy compared to the traditional SVM and other SVM-optimization methods