50 research outputs found
Notes on Amanita section Validae in Hainan Island, China
- Author
- Publication venue
- 'Frontiers Media SA'
- Publication date
- 01/01/2023
- Field of study
Hainan is the second largest island in China with the most extensive and well-preserved tropical forests and is also the largest island of the Indo Burma Biodiversity Hotspot. It provides in situ conservation for the unique ecosystem of the island. Recent studies have shown that there are diverse fungal species in Hainan. In this study, about 40 collections of the genus Amanita have been studied based on the morphology and molecular systematics, including 35 Chinese specimens (24 from Hainan, and eleven from other regions) and three specimens from other countries (Singapore and Malaysia). In total, five new species belonging to Amanita section Validae are described: A. cacaina, A. parvigrisea, A. pseudofritillaria, A. pseudosculpta, and A. yangii. Amanita parvifritillaria is recorded for the first time in Hainan. It is also the first report of this fungus occurring, outside Yunnan Province, China. Among the five new species, two are unique in this section because of the appendiculate pileus margin and the absence of an annulus. Based on these new findings, the diagnosis of the section Validae should be slightly modified to include a few species with appendiculate margin and the lack of annulus
Antimicrobial resistance among migrants in Europe: a systematic review and meta-analysis
- Author
- Aahlin Eirik Kjus
- Aamer Ahmed
- Aaniana Kenneth
- Ababneh Ali
- Abaliksta Tomas
- Abantanga Francis
- Abbas Athar
- Abbasy Jibran
- Abbo Olivier
- Abbott Tom
- Abbouch Meryem
- Abd El-Latif Nadia Khalid
- Abd Elkhalek Esraa
- Abd-Elmawla Manar
- Abdallah Emad
- Abdel-Aty Abdulrahman
- Abdel-Hameed Noran
- Abdel-Kader Sara Mahmoud
- Abdelaal Abdelaziz
- Abdelaty Mohamed
- Abdelazeam Anan Rady
- Abdelazim Galaleldin
- Abdelaziz Mohamed A.
- Abdelbadeai Kholoud
- Abdelfatah Afnan
- Abdelhady Samar
- Abdelhamed Rasha
- Abdelhamid Amina
- Abdelhaq Aram
- Abdelkader Mostafa
- Abdelkader Omar
- Abdelkhalek Mohamed
- Abdelmageed Eman
- Abdelmotaleb Ibrahem
- Abdelraouf Ahmed Mahmoud
- Abdelrouf Doaa Maher
- Abdelshakour Mahmoud
- Abdrabou Abdulshafi Khaled
- Abdul-Latif Saiba
- Abdulaziz Hager
- Abdulaziz Mustafa
- Abdulbagi Omar
- Abdulhakeem Eman Mahmoud
- Abdullah Mohamed Abozed
- Abdullah Nik Azim Nik
- Abdullah Noha
- Abdullahi Lawal
- Abdurrazzaaq Abdussemiu
- Abem Owusu Emmanuel
- Abiola Olajide
- Aboelella Majed
- Aboelmagd Omnia
- Aboelsoud Moustafa R.
- Aboul-Naga Mariam Saad
- Abouzaid Arwa
- Abu Qumbos Amjad
- Abu-toyour Maram
- Abubakr Marwan
- Abuowda Yousef
- Abuqwaider Eman
- Abusalem Lana
- Abushamleh Soha
- Ackom Eric
- Acquah Emmanuel
- Adam Ali
- Adam Nourhan
- Adamu Ahmed
- Adawi Ihdaa
- Adawi Mohammad
- Adebanjo Ademola
- Adebola Oluwaseyi
- Adedeji Adesina
- Adel Badr Eldin
- Adel Israa
- Adella Fidelis Jacklyn
- Adelshone Abdelrahman
- Ademuyiwa Adesoji
- Ademuyiwa Adesoji O.
- Ademuyiwa Adesoji O.
- Adenekan Babajide
- Adeniran James
- Adeniyi Adewale
- Adesanya Opeoluwa
- Adesina Alaba
- Adeyeye Ademola
- Adeyeye Ademola
- Adhitama Novia
- Adil Muhammad
- Adisa Adewale O.
- Adiyaman Can
- Adu-Aryee Niiarmah
- Afana Samah
- Agalianos Christos
- Agarwal Arnav
- Agarwal Arnav
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- Aguilera Maria Lorena
- Aguilera Maria Lorena
- Aguilera-Arevalo Maria-Lorena
- Ahlonsou Germain
- Ahlqvist Sandra
- Ahlqvist Sandra
- Ahmed Asdaq
- Ahmed Ataa
- Ahmed Hayam
- Ahmed Hussien
- Ahmed Lopna Ahmed Mohamed
- Ahmed Sara
- Ahmed Saraibrahim
- Ahounou Ernest Yemalin Stephane
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- Akoto Elliot
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- Al-Bahrani Ahmed
- Al-Buhaisi Alaa
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- Al-faqawi Maha
- Al-farram Hadeel
- Al-khatib Ahmed
- Al-Marakby Dina
- Al-saqqa Sara
- Al-Saqqa Sara W.
- Al-Slaibi Ibrahim
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- Alada Muslimat
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- Alaloul Enas
- Alamin Shadid
- Alamoudi Mohammed
- Albiety Adel
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- Alejos Bermudez Ysabel Esthefany
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- Alhady Khaled
- Alhammali Tariq
- Alhassan Basmah
- Alhazmi Wedyan
- Alherz Mohammad
- Ali Ahmed
- Ali Citra Dewi Mohd
- Ali Elsayed
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- Ali Syed Abdul Wahhab Eusoffee Wan
- Ali Tebian Hassanein Ahmed
- Ali Wadah
- Alihonou Thierry
- Alis Halil
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- Alkelani Muhammad
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- Aman Nowrin F.
- Amandito Radhian
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- Amin Hager Abdul Aziz
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- Amoah Michael
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- Amreia Mahmoud
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- Arsyad Hasbi Maulana
- Arthur Tom
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- Farhan-Alanie Muhamed M. H.
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- Hrora Abdelmalek
- Hunter Kristina
- Husseiny Reem
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- Ibrahem Ahmad Aboelkassem
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- Jabal Mohamed Sobhi
- Jaber Sahar
- Jaffry Zahra
- Jaich Robert
- Jama Guled M.
- Jamal Luai
- Janardha K. C.
- Janik Michal
- Jankus Tomas
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- Javaid Mahnoor
- Jayathilake A. B.
- Jean-Francois Colombani
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- Zumbuhl Lucius
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- Elsevier
- Publication date
- 01/06/2003
- Field of study
BACKGROUND: Rates of antimicrobial resistance (AMR) are rising globally and there is concern that increased migration is contributing to the burden of antibiotic resistance in Europe. However, the effect of migration on the burden of AMR in Europe has not yet been comprehensively examined. Therefore, we did a systematic review and meta-analysis to identify and synthesise data for AMR carriage or infection in migrants to Europe to examine differences in patterns of AMR across migrant groups and in different settings. METHODS: For this systematic review and meta-analysis, we searched MEDLINE, Embase, PubMed, and Scopus with no language restrictions from Jan 1, 2000, to Jan 18, 2017, for primary data from observational studies reporting antibacterial resistance in common bacterial pathogens among migrants to 21 European Union-15 and European Economic Area countries. To be eligible for inclusion, studies had to report data on carriage or infection with laboratory-confirmed antibiotic-resistant organisms in migrant populations. We extracted data from eligible studies and assessed quality using piloted, standardised forms. We did not examine drug resistance in tuberculosis and excluded articles solely reporting on this parameter. We also excluded articles in which migrant status was determined by ethnicity, country of birth of participants' parents, or was not defined, and articles in which data were not disaggregated by migrant status. Outcomes were carriage of or infection with antibiotic-resistant organisms. We used random-effects models to calculate the pooled prevalence of each outcome. The study protocol is registered with PROSPERO, number CRD42016043681. FINDINGS: We identified 2274 articles, of which 23 observational studies reporting on antibiotic resistance in 2319 migrants were included. The pooled prevalence of any AMR carriage or AMR infection in migrants was 25·4% (95% CI 19·1-31·8; I2 =98%), including meticillin-resistant Staphylococcus aureus (7·8%, 4·8-10·7; I2 =92%) and antibiotic-resistant Gram-negative bacteria (27·2%, 17·6-36·8; I2 =94%). The pooled prevalence of any AMR carriage or infection was higher in refugees and asylum seekers (33·0%, 18·3-47·6; I2 =98%) than in other migrant groups (6·6%, 1·8-11·3; I2 =92%). The pooled prevalence of antibiotic-resistant organisms was slightly higher in high-migrant community settings (33·1%, 11·1-55·1; I2 =96%) than in migrants in hospitals (24·3%, 16·1-32·6; I2 =98%). We did not find evidence of high rates of transmission of AMR from migrant to host populations. INTERPRETATION: Migrants are exposed to conditions favouring the emergence of drug resistance during transit and in host countries in Europe. Increased antibiotic resistance among refugees and asylum seekers and in high-migrant community settings (such as refugee camps and detention facilities) highlights the need for improved living conditions, access to health care, and initiatives to facilitate detection of and appropriate high-quality treatment for antibiotic-resistant infections during transit and in host countries. Protocols for the prevention and control of infection and for antibiotic surveillance need to be integrated in all aspects of health care, which should be accessible for all migrant groups, and should target determinants of AMR before, during, and after migration. FUNDING: UK National Institute for Health Research Imperial Biomedical Research Centre, Imperial College Healthcare Charity, the Wellcome Trust, and UK National Institute for Health Research Health Protection Research Unit in Healthcare-associated Infections and Antimictobial Resistance at Imperial College London
Genetic mechanisms of critical illness in COVID-19.
- Author
- A A Roger Thompson
- A Abraheem
- A Agasou
- A Ahmed
- A Ali
- A Allan
- A Altabaibeh
- A Alvaro
- A Aspinwall
- A Ayers
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- Susanna Guerrini
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- T Smith
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- Trevor Paterson
- Tullio Trotta
- Turtle Lance
- U Poultney
- V Amin
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- V Irvine
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- V Linnett
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- V Parris
- V Pristopan
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- V Rivers
- V Sarathy
- V Thomas
- V Thwaites
- V Tuckey
- V Turner
- V Wagstaff
- V Waugh
- Valentina Anemoli
- Vanessa Sancho-Shimizu
- Victoria Shaw
- Vitart Veronique
- W Harrison
- W Khaliq
- W Khaliq
- W McCormick
- W Woodyatt
- Walker Susan
- Walsh Timothy
- Wang Bo
- Wei Shen Lim
- Wendy S Barclay
- William A Paxton
- William Greenhalf
- Wilson James F
- Wrobel Nicola
- Wu Yang
- X Qiu
- Y Baird
- Y Choudhury
- Y Hussain
- Y Jackson
- Y Thirlwall
- Yang Jian
- Yang Zhijian
- Z Alldis
- Z Belagodu
- Z Bradshaw
- Z Coton
- Z Daly
- Z Farzad
- Z Fernandez
- Z Garland
- Z Maqsood
- Z Omar
- Z Prime
- Z Scott
- Zechner Marie
- Zhai Ranran
- Zheng Chenqing
- Publication venue
- Nature
- Publication date
- 01/01/2020
- Field of study
Host-mediated lung inflammation is present1, and drives mortality2, in the critical illness caused by coronavirus disease 2019 (COVID-19). Host genetic variants associated with critical illness may identify mechanistic targets for therapeutic development3. Here we report the results of the GenOMICC (Genetics Of Mortality In Critical Care) genome-wide association study in 2,244 critically ill patients with COVID-19 from 208 UK intensive care units. We have identified and replicated the following new genome-wide significant associations: on chromosome 12q24.13 (rs10735079, P = 1.65 × 10-8) in a gene cluster that encodes antiviral restriction enzyme activators (OAS1, OAS2 and OAS3); on chromosome 19p13.2 (rs74956615, P = 2.3 × 10-8) near the gene that encodes tyrosine kinase 2 (TYK2); on chromosome 19p13.3 (rs2109069, P = 3.98 × 10-12) within the gene that encodes dipeptidyl peptidase 9 (DPP9); and on chromosome 21q22.1 (rs2236757, P = 4.99 × 10-8) in the interferon receptor gene IFNAR2. We identified potential targets for repurposing of licensed medications: using Mendelian randomization, we found evidence that low expression of IFNAR2, or high expression of TYK2, are associated with life-threatening disease; and transcriptome-wide association in lung tissue revealed that high expression of the monocyte-macrophage chemotactic receptor CCR2 is associated with severe COVID-19. Our results identify robust genetic signals relating to key host antiviral defence mechanisms and mediators of inflammatory organ damage in COVID-19. Both mechanisms may be amenable to targeted treatment with existing drugs. However, large-scale randomized clinical trials will be essential before any change to clinical practice
AI is a viable alternative to high throughput screening: a 318-target study
- Author
- Abaffy Tatjana
- Abraham Elena Theres
- Abrahão Jônatas Santos
- Abramyan Tigran M.
- Agianian Bogos
- Agogo-Mawuli Percy
- Agoulnik Alexander I.
- Agrawal Rajendra K.
- Aguilera Elena
- Ahmed Mostafa
- Akk Gustav
- Akopian Tatos
- Al-Yozbaki Minnatallah
- Aldhamen Yasser Ali
- Alkan Cigdem
- Alramadhani Dina
- Alteen Matthew G.
- Alvarez Guzmán
- Ammendola Serena
- Anastasio Noelle C.
- Anderson Brandon M.
- Anderson Deborah H.
- Andricopulo Adriano D.
- Angell Richard M.
- Anthis Nicholas J.
- Antonelli Lorenzo
- Apfel Athena Marie
- Arias Juan Antonio Sanchez
- Arozarena Imanol
- Arrigoni Cristina
- Artía Zoraima
- Ashkar Shireen R.
- Ashton Mark R.
- Austin Richard C.
- Ayachi Aicha Gharbi
- Azeem Syeda Maryam
- Bailey-Elkin Ben A.
- Balakrishnan Bijina
- Balaña-Fouce Rafael
- Ballatore Carlo
- Banerjee Sourav
- Banerji Versha
- Banjo Toshihiro
- Barghash Marim M.
- Batey Robert A.
- Battistoni Andrea
- Baumann Ulrich
- Bdira Fredj Ben
- Bedi Mel
- Ben-Johny Manu
- Bergman Bastiaan
- Bernard Denzil
- Berti Andrew
- Bharambe Nikhil
- Bishop Ozlem Tastan
- Blanchet Xavier
- Blelloch Robert
- Blumenthal Robert M.
- Bognár Gabriella
- Bogomolovas Julijus
- Bon Carlotta
- Boorman Jacob
- Borowska Anna
- Borriello Francesco
- Bowman Gregory R.
- Bradley Robert K.
- Bradshaw William J.
- Brady-Kalnay Susann M.
- Breton Hairol E.
- Bruning John B.
- Bruning John Burt
- Bryant-Friedrich Amanda
- Buckner Frederick S.
- Buroni Silvia
- Butler Brittany
- Byrne Lee J.
- Byun Soo Young
- Caflisch Amedeo
- Cakir Isin
- Caliandro Ileana
- Caljon Guy
- Cann Andrew B.
- Caporali Andrea
- Capuzzi Stephen J.
- Caroleo Maria Cristina
- Cathcart Ann M.
- Celano Stephanie L.
- Cerna Mark Vincent C. dela
- Chadni Somaia Haque
- Champion Matthew M.
- Chan Nei-Li
- Chapman Carly J.
- Chaton Catherine T.
- Chatterjee Arnab K.
- Chaudhuri Dipayan
- Chauhan Shefali
- Chaytow Helena
- Chen Daniel
- Chen Lifeng
- Chen Yicheng
- Chern Ting-Rong
- Chini Andrea
- Chou Tristan
- Chou Tsui-Fen
- Christensen Emily M.
- Christodoulides Myron
- Chu Shaoyou
- Chua Benjamin Soon Kai
- Chuah Janelle
- Chung Zara
- Chuong Patrick
- Ciccia Alberto
- Cildir Gökhan
- Cione Erika
- Clayton W. Brent
- Coles John G.
- Colomba Audrey
- Colotti Gianni
- Conn Graeme L.
- Conticello Silvestro G.
- Contreras Stephanie
- Cools Julie
- Coombe Deirdre R.
- Corson Timothy W.
- Cortopassi Gino
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- Costoya Jose A.
- Cowen Leah E.
- Cox Bryan D.
- Cuddihy Andrew R.
- Cullinane Ryan T.
- Cunningham Kathryn A.
- Dahal Gopal
- Dallman Sydney
- Dame Remus T.
- Davtyan Aram
- De Keulenaer Gilles
- De Luise Monica
- de Oliveira Aldo Sena
- de Oliveira Saulo
- de Sousa Alessandra Mara
- de Souza Guilherme Eduardo
- Debonsi Hosana Maria
- Degterev Alexei
- DeHaan Nicholas
- Del Rio Flores Antonio
- Dempsey Garrett
- Desai Umesh R.
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- Kroon Erna Geessien
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- Kwiatkowski Jacek
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- Lai Kent
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- Leuzzi Giuseppe
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- Lisabeth Erika Mathes
- Liu Chen
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- Liu Pengda
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- Mattevi Andrea
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- Mayer Gaétan
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- McCarthy Ronan R.
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- McManus Kirk James
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- Musta Kirsikka
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- Myhr Courtney
- Mysinger Michael
- Mysore Venkatesh
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- Nagamori Kiyo
- Namasivayam Vigneshwaran
- Nasburg Joshua Alexander
- Ng Ho Leung
- Ng James
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- Nguyen Kong
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- null null
- Ogunwa Tomisin Happy
- Ojha Anil K.
- Ojo Kayode K.
- Olson Steven H.
- Ortiz Diana
- Oyarzabal Julen
- O’Brien Terrence E.
- O’Connell Patrick
- O’Dea Austin
- O’Donoghue Anthony J.
- O’Mara Megan L.
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- O’Meara Timothy R.
- O’Sullivan Ann Marie
- Pai Vaibhav P.
- Paige Mikell
- Palazzo Teresa
- Panganiban Antonito T.
- Paparella Ashleigh S.
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- Pascal John M.
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- Pérez-Pertejo Yolanda
- Phadke Sameer
- Pham Kien
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- Poirier Steve
- Popowicz Grzegorz Maria
- Porcelli Anna Maria
- PrasadPrasad Srimukh Veccham Krishna
- Presser Adam G.
- Pressly Brandon
- Prikler Gergely
- Prince Ashutosh
- Puchades-Carrasco Leonor
- Pusztai Lajos
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- Zeina Christina M.
- Zelinskaya Natalia
- Zhang Dingqiang
- Zhang Gang
- Zhang Wenjun
- Zhang Xu
- Zhang Yan Jessie
- Zhang Zhiguo
- Zhao Jinshi
- Zhou Han
- Zhou Hui
- Zhou Jia
- Zhou Pei
- Zhou Shan
- Zhu Jiaqi
- Zhu Siran
- Zhu Yini
- Zhuo Ling
- Zochodne Douglas William
- Publication venue
- Publication date
- 01/01/2024
- Field of study
: High throughput screening (HTS) is routinely used to identify bioactive small molecules. This requires physical compounds, which limits coverage of accessible chemical space. Computational approaches combined with vast on-demand chemical libraries can access far greater chemical space, provided that the predictive accuracy is sufficient to identify useful molecules. Through the largest and most diverse virtual HTS campaign reported to date, comprising 318 individual projects, we demonstrate that our AtomNet® convolutional neural network successfully finds novel hits across every major therapeutic area and protein class. We address historical limitations of computational screening by demonstrating success for target proteins without known binders, high-quality X-ray crystal structures, or manual cherry-picking of compounds. We show that the molecules selected by the AtomNet® model are novel drug-like scaffolds rather than minor modifications to known bioactive compounds. Our empirical results suggest that computational methods can substantially replace HTS as the first step of small-molecule drug discovery
Finishing the euchromatic sequence of the human genome
- Author
- . Haifeng
- . Magner
- . Yin
- Abbott Scott
- Abbott-Ozersky Amanda
- Abdellah Zahra
- Abouelleil Amr
- Abrajano Anne
- Adachi Tamami
- Adam Catherine
- Adams Charles Q.
- Adamson Aaron
- Adekoya Emmanuel
- Adio-Oduola Babajide
- Aerts Andrea
- Aggarwal Arun
- Ahmadi Alireza
- Ahmed Shahana
- Aimable Matthew
- Ainscough Rachael
- Ait-Zahra Mostafa
- Aizu Tomoyuki
- Alcivare Dana
- Alegria Michelle
- Ali Alla
- Ali Johar
- Allegria-hartmann Michelle
- Alleman Jennifer
- Allen Carlana C.
- Allen Heather
- Allen Nicole R.
- Allen Susan
- Allen Thaddeus
- Almeida Jeff
- Almond Claire
- Alsbrooks Stephen L.
- Altherr Michael R.
- Amaratunge Harshinie C.
- Ambler Andrew
- Ambrose Karen
- Ambrose Kerrie
- Amemiya Chris
- Amico-Keller Gina
- Amin Amita G.
- Anderson Mechele
- Anderson Scott
- Anderson Scott
- Andora Janice
- Andredesz Carol
- Andrew Robert
- Andrews Dan
- Andrews Daniel
- Andrews Neil
- Andrews Stephanie
- Andriese Tim
- Anthouard Véronique
- Antonarakis Stylianos E.
- Anyalebechi Vivian
- Aoki Norie
- Apostolou Sinoula
- Apweiler Eva
- Arachchi Harindra
- Arai Rie
- Arbery Hazel
- Arcaina Marlon
- Arcaina Terisita
- Archer Beth
- Arellano Andre
- Arellano-Jones Perry
- Armbruster Jeff
- Armstrong Jon
- Arredondo Dilrukshi P.
- Arredondo Heather Hope
- Artiguenave François
- Asakawa Shuichi
- Asakawa Teruyo
- Ash Gareth
- Ashcroft Kevin
- Ashurst Jennifer
- Ashwell Robert
- Ashworth Linda K.
- Aslanidis Cara
- Asomugha Chinwe O.
- Asuncion Lawreen
- Atkin Deborah
- Atkinson Andrea
- Atkinson Barry
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- Huang Mei
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- Huang Wei
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- Huckle Elizabeth
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- Ishizaki Hinako
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- Jaklevic Michael
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- Jenkins Lee
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- Jewett Phillip E.
- Jia Jia
- Jia Jia
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- Jiang Lu
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- Jimenez Alberto
- Jin Jian
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- Jolivet Angela
- Jolley Keith
- Jones Abigail
- Jones Charlien
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- Jones Matthew
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- Jones Micheil
- Jones Myrna D.
- Jones Steven
- Jong Pieter De
- Jordan Yun
- Joseph Shirin
- Joy Ann
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- Kasprzyk Arek
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- Kato Takako
- Kauer Gerhard
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- Kershaw Joanna
- Kettleborough Ross
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- Kosiura Anna
- Kou Zhaohui
- Kovar Christie L.
- Krawczyk Marie-Claude
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- Kremmidiotis Gabriel
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- Kube Michael
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- Lamerdin Jane E.
- Lander Eric S.
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- Lowenstein Michael G.
- Lowry Stephen
- Lozado Ryan J.
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- MacLean Christine
- Madabhushi Ramki
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- Sutton Angelica E.
- Svatek Amanda F.
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- Tatum Owatha I.
- Taudien Stefan
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- Tian Chaoguang
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- Tong Jingli
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- Ueng Samantha
- Ukegbu Ogechi Nkemdirim
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- Zhang Xiuqing
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- Zhang Yilin
- Zhang Ying
- Zhang Yuansen
- Zhang Yuzhi
- Zhang Zhengdong
- Zhao Hongmei
- Zhao Lijian
- Zhao Shenru
- Zhao Zhijing
- Zhen Zhicheng
- Zheng Haibo
- Zhong Ming
- Zhou Carol
- Zhou Haixia
- Zhou Jianling
- Zhou Nannan
- Zhou Xinfeng
- Zhou Yan
- Zhou Yang
- Zhou Yi
- Zhu Bingying
- Zhu Bofeng
- Zhu Fenghua
- Zhu Genfeng
- Zhu Genfeng
- Zhu Miao
- Zhu Ning
- Zhu Yongge
- Zhu Zhen
- Zhuang Shitao
- Zierten Deborah
- Zimmer Andrew
- Zody Michael C.
- Zollo Massimo
- Zorrilla Sara E.
- Zuo Lin
- Publication venue
- LSU Digital Commons
- Publication date
- 21/10/2004
- Field of study
The sequence of the human genome encodes the genetic instructions for human physiology, as well as rich information about human evolution. In 2001, the International Human Genome Sequencing Consortium reported a draft sequence of the euchromatic portion of the human genome. Since then, the international collaboration has worked to convert this draft into a genome sequence with high accuracy and nearly complete coverage. Here, we report the result of this finishing process. The current genome sequence (Build 35) contains 2.85 billion nucleotides interrupted by only 341 gaps. It covers ∼99% of the euchromatic genome and is accurate to an error rate of ∼1 event per 100,000 bases. Many of the remaining euchromatic gaps are associated with segmental duplications and will require focused work with new methods. The near-complete sequence, the first for a vertebrate, greatly improves the precision of biological analyses of the human genome including studies of gene number, birth and death. Notably, the human enome seems to encode only 20,000-25,000 protein-coding genes. The genome sequence reported here should serve as a firm foundation for biomedical research in the decades ahead
Surgical site infection after gastrointestinal surgery in high-income, middle-income, and low-income countries: a prospective, international, multicentre cohort study
- Author
- Aahlin Eirik Kjus
- Aamer Ahmed
- Aaniana Kenneth
- Ababneh Ali
- Abaliksta Tomas
- Abantanga Francis
- Abbas Athar
- Abbasy Jibran
- Abbo Olivier
- Abbott Tom
- Abbouch Meryem
- Abd El-Latif Nadia Khalid
- Abd Elkhalek Esraa
- Abd-Elmawla Manar
- Abdallah Emad
- Abdel-Aty Abdulrahman
- Abdel-Hameed Noran
- Abdel-Kader Sara Mahmoud
- Abdelaal Abdelaziz
- Abdelaty Mohamed
- Abdelazeam Anan Rady
- Abdelazim Galaleldin
- Abdelaziz Mohamed A
- Abdelbadeai Kholoud
- Abdelfatah Afnan
- Abdelhady Samar
- Abdelhamed Rasha
- Abdelhamid Amina
- Abdelhaq Aram
- Abdelkader Mostafa
- Abdelkader Omar
- Abdelkhalek Mohamed
- Abdelmageed Eman
- Abdelmotaleb Ibrahem
- Abdelraouf Ahmed Mahmoud
- Abdelrouf Doaa Maher
- Abdelshakour Mahmoud
- Abdrabou Abdulshafi Khaled
- Abdul-Latif Saiba
- Abdulaziz Hager
- Abdulaziz Mustafa
- Abdulbagi Omar
- Abdulhakeem Eman Mahmoud
- Abdullah Mohamed Abozed
- Abdullah Nik Azim Nik
- Abdullah Noha
- Abdullahi Lawal
- Abdurrazzaaq Abdussemiu
- Abem Owusu Emmanuel
- Abiola Olajide
- Aboelella Majed
- Aboelmagd Omnia
- Aboelsoud Moustafa R
- Aboul-Naga Mariam Saad
- Abouzaid Arwa
- Abu Qumbos Amjad
- Abu-toyour Maram
- Abubakr Marwan
- Abuowda Yousef
- Abuqwaider Eman
- Abusalem Lana
- Abushamleh Soha
- Ackom Eric
- Acquah Emmanuel
- Adam Ali
- Adam Nourhan
- Adamu Ahmed
- Adawi Ihdaa
- Adawi Mohammad
- Adebanjo Ademola
- Adebola Oluwaseyi
- Adedeji Adesina
- Adel Badr Eldin
- Adel Israa
- Adella Fidelis Jacklyn
- Adelshone Abdelrahman
- Ademuyiwa Adesoji
- Ademuyiwa Adesoji O
- Ademuyiwa Adesoji O
- Adenekan Babajide
- Adeniran James
- Adeniyi Adewale
- Adesanya Opeoluwa
- Adesina Alaba
- Adeyeye Ademola
- Adeyeye Ademola
- Adhitama Novia
- Adil Muhammad
- Adisa Adewale O
- Adiyaman Can
- Adu-Aryee Niiarmah
- Afana Samah
- Agalianos Christos
- Agarwal Arnav
- Agarwal Arnav
- Agbedinu Kwabena
- Aglan Amro
- Aguado Suarez Nuria
- Aguilera Maria Lorena
- Aguilera Maria Lorena
- Aguilera-Arevalo Maria-Lorena
- Ahlonsou Germain
- Ahlqvist Sandra
- Ahlqvist Sandra
- Ahmed Asdaq
- Ahmed Ataa
- Ahmed Hayam
- Ahmed Hussien
- Ahmed Lopna Ahmed Mohamed
- Ahmed Sara
- Ahmed Saraibrahim
- Ahounou Ernest Yemalin Stephane
- Ajah Jonathan
- Ajai Olalekan
- Ajao Akinlabi
- Ajiboye Anthony
- Akoto Elliot
- Akpenyi Onyinye
- Al Amin Shadid
- Al Attar Samaa Mahmoud
- Al Barraw Fayez Elian
- Al Bastawis Fatema
- Al Meligy Amgad
- Al Rafati Ahmad Abdel Razaq
- Al Raouf Eman Abd
- Al Saied Ghiath
- Al Subaie Norah
- Al-Bahrani Ahmed
- Al-Buhaisi Alaa
- Al-Dakka Emad
- Al-faqawi Maha
- Al-farram Hadeel
- Al-khatib Ahmed
- Al-Marakby Dina
- Al-saqqa Sara
- Al-Saqqa Sara W
- Al-Slaibi Ibrahim
- Al-taher Taher
- AlaaelDein Shahinaz
- Alada Muslimat
- Alakaloko Felix
- Alaloul Enas
- Alamin Shadid
- Alamoudi Mohammed
- Albiety Adel
- Alcca Ticona Willy
- Alejos Bermudez Ysabel Esthefany
- Alexander Philip
- Alexander Philip
- Alexandre Challine
- Alghamdi Ahmed
- Alghamdi Mohammed Saleh A
- Alhady Khaled
- Alhammali Tariq
- Alhassan Basmah
- Alhazmi Wedyan
- Alherz Mohammad
- Ali Ahmed
- Ali Citra Dewi Mohd
- Ali Elsayed
- Ali Safia
- Ali Syed Abdul Wahhab Eusoffee Wan
- Ali Tebian Hassanein Ahmed
- Ali Wadah
- Alihonou Thierry
- Alis Halil
- Aliyu Halima
- Aliyu Mohammad
- Aliyu Shamsudeen
- Aljboor Khaled
- Aljiffry Murad
- Alkaaki Aroub
- Alkelani Muhammad
- Allam Meran
- Allam Yomna
- Alnaby Mohamed Hassab
- Alnusairat Aseel
- Alqahtani Saleh
- Alsaggaf Mohammed Ubaid
- Alser Osaid H
- Alshareef Reham
- Altaf Abdulmalik
- Altamimi Abdullah
- Altamimi Afnan
- Altamini Afnan
- Altarayra Marwa
- Altibi Ahmed
- Altinel Yuksel
- Altinel Yuksel
- Altwijri Abdulaziz
- Alvi Abdul Rehman
- Aly Mohammed Yahia Mohamed
- Alyacoubi Said
- Alyahya Reem
- Alzahrani Ahmed
- Aman Nowrin F
- Amandito Radhian
- Amandito Radhian
- Ambrona-Zafra David
- Amin Hager Abdul Aziz
- Amjad Mohammadasim
- Amoah Michael
- Amoako Joachim
- Amoako Philip Taah
- Amoako-Boateng Mabel
- Amole Isaac
- Amreia Mahmoud
- Anderson Frank
- Andika Ferry Fitriya Ayu
- Andreotti Dario
- Andress Cedar
- Andriola Valeria
- Ang Yun Lin
- Angelieri Daniele
- Anis Echaieb
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- Ansaloni Luca
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- Anthoulakis Christos
- Antoniozzi Angelo
- Anwar Nourhan
- Anyanwu Lofty-John
- Aonzo Paolo
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- Appiah Eric Kofi
- Aquilino Fabrizio
- Arafa Omar
- Arafa Sara
- Arango Maria Clara Mendoza
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- Armellini Andrea
- Arnaud Alexis
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- Arshad Mohammad Mohsin
- Arslan Ekin
- Arsyad Hasbi Maulana
- Arthur Tom
- Aruldas Neerav
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- Ashour Ahmad
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- Assal Abdelrahman
- Asturias Sabrina
- Asumah Hamza
- Ata Ahmed
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- Augestad Knut Magne
- Aviles Susan
- Avoka Anthony
- Awad Israa
- Awad Sawsan Adel
- Awadallah Salwa
- Ayandipo Omobolaji
- Aydin Mehmet Can
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- Aziz Mohamed Rezal Abdul
- Aziz Nora Abdul
- Azizeldine Mohammed G
- Azzie Georges
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- Schultz Johannes Kurt
- Scicluna Ruth
- Segovia Lohse Helmut Alfredo
- Seisay Sam
- Selvaggi Francesco
- Selvaggi Lucio
- Semeda Nourhan
- Semiz Anil
- Sena-Ruiz Fatima
- Senanayake Kithsiri J
- Setiawan Jonny
- Seto Djifid Morel
- Seyoum Nebyou
- Sfougaris Dimitrios
- Shachykava Tatsiana
- Shaharuddin Shahadatul
- Shahbaz Aized Raza
- Shaheen Alaa
- Shahine Ahmed
- Shahzad Noman
- Shaikh Nihaal
- Shakshouk Hend Adel Gawad
- Shalabi Ahmad
- Shalaby Mahmoud
- Shalaby Mostafa
- Shamasneh Ala
- Shamsedine Ahmed W
- Sharma Abhishek
- Sharpin Claire
- Shatkar Veeranna
- Shaw Catherine A
- Shaw Catherine A
- Shawky Martina Yusuf
- Shawqi Muhammad
- Sheshe Abdurrahaman
- Sheta Ahmed
- Shillito Sam
- Shiwani Haaris A
- Sholadoye Tunde
- Shrimanker Nikhita
- Shu Sebastian
- Shu Sebastian
- Shu Sebestian
- Shubianok Maryna
- Shwky Ayman
- Siaw Jia Yng
- Sierra Sebastian
- Sigurdadottir Johanna
- Sii Samuel SY
- Sileri Pierpaolo
- Silvestri Vania
- Simioni Andrea
- Simutis Gintaras
- Skerritt Clare
- Slapelyte Evelina
- Sleem Ahmad Saber
- Sleem Mohamed
- Smart Neil
- Smart Neil
- Smedley Alexander
- Smith Christopher
- Sobnach Sanju
- Sokratous Arestis
- Solaini Leonardo
- Solar Garcia Lorena
- Soldevila-Verdeguer Carla
- Soledad Merlo Maria
- Soley Rafael
- Soliman Abdelrahman
- Soliman Ahmed
- Soliman Noha Abdullah
- Soliman Nourhan
- Soliman Samar
- Soliman Yasmin
- Sollazzo Viviana
- Soon Wai Cheong
- Soreide Jon Arne
- Soreide Kjetil
- Soreide Kjetil
- Souaibou Yacoubou Imorou
- Soulou Vasiliki
- Spence Richard
- Spence Richard
- Spence Richard
- Spence Richard
- Sproule Lorraine
- Srinivasan Ravi
- Sroor Fathy
- Sruogiene Elena Zdanyte
- Steccanella Francesca
- Stefanopoulos Anastasios
- Stock Simon
- Stoddart Michael
- Stoddart Michael
- Stourton Frederick
- Strupas Kestutis
- Stuva Jessica
- Styles Kristian
- Suarez Aida
- Subocius Andrejus
- Sund Malin
- Suresh Sukrit
- Sutandi Nathania
- Suyadi Arlindawati
- Swaroop Mamta
- Syibrah Khuzaimah Zahid
- Tabiri Stephen
- Tabiri Stephen
- Tabiri Stephen
- Tabiri Stephen
- Tackie Enoch
- Taddei Antonio
- Tahboub Haya
- Taher Ayman And
- Taher Mustafa Mohammed
- Taieb Chouikh
- Taiwo Agboola
- Taiwo Ogechukwu
- Talaat Muhammed
- Tale Luis
- Talving Peep
- Talving Peep
- Tan Charlene
- Tan Choy Ling
- Tan Joel Kin
- Tan Keith Say Kwang
- Tan Ryan Choon Kiat
- Tan Yee Wen
- Tan Yi Koon
- Tang Lingshan
- Tani Sobhana Iftekhar
- Tansoker Ilkan
- Tarek Adham
- Tarek Dina
- Targa Simone
- Tariq Sherif
- Tata Mahadevan Deva
- Tawfik Badreldin Adel
- Tawfik Gehad
- Teasdale Ella
- Teasdale Ella
- Teasdale Ella
- Tedeschi Umberto
- Tembo Thelma
- Tennakoon Athula
- Teo Shuang Yi
- Ter Eunice Zuling
- Tew Yong Yong
- Tew Yong Yong
- Thabet Waleed
- Thalgaspitiya SPB
- Theodosopoulos Theodosios
- Thollot Aurore
- Thorarinsdottir Hildur
- Thorell Anders
- Timothy Oyediran Kehinde
- Ting Jesse Ron Swire
- To Kathleen
- Tolonen Matti
- Tolotra Todisoa Emmanuella Christina
- Tomas Kadir
- Tori Sayeeda Aktar
- Toribio Orbegozo Pedro Angel
- Torrance Hew D
- Torres Cardozo Jorge
- Torres Rodriguez Servio Tulio
- Toto Omer Faruk
- Townsend Dominic
- Trompetto Mario
- Tselos Angelos
- Tshisola Serge Kapenda
- Tugnoli Gregorio
- Tun Myint
- Turati Luca
- Turkustani Sondos
- Turpo Espinoza Kenny
- Turpo Espinoza Kevin
- Tutino Roberta
- Tverskis Zygimantas
- Tyler Robert
- Tze R Goh Ern
- Tzikos Georgios
- Ubiali Paolo
- Ukwenya Yahaya
- ul Razi Syed Asaat
- Ulusahin Mehmet
- Upadhyaya Vijaid
- Urbonas Tomas
- Urniezius Zigmantas
- Uscinas Laimonas
- Uzabumwana Norbert
- Vaicius Arturas
- Valcarcel-Saldana Maria
- Valioulis Ioannis
- Van Der Naald Niels
- Van Niekerk Michael
- Van Straten Stephanie
- Vargas Marvin
- Vartanoglu Talar
- Vartic Mihaela
- Vasquez Giorgio
- Vasquez Idelso
- Veen Torhild
- Velasquez Ricardo
- Venclauskas Linas
- Vendramin Elena
- Venskutonis Donatas
- Venskutonis Donatas
- Verbeek Anna
- Vergara Mejia Angelica Genoveva
- Verjee Azmina
- Vermaas Maarten
- Vicario Erika
- Vicenta Collado Maria
- Vida Lucian Corneliu
- Vilcinskas Mantas
- Villalobos Santiago
- Violi Paola
- Visinskas Petras
- Voulgaris Evangelos
- Wael Noha
- Wakefield Rebecca
- Waledziak Maciej
- Walker Michael
- Walker Nathan
- Walls Luke
- Walsh Michael
- Waqar Muhammad
- Warren Oliver
- Waterman Ade
- Werder Gabriela
- Whitaker John
- White Rebecca
- Whitehurst Katharine
- Wiborg Joachim
- Widiastini T Ariani
- Widmer Lukas Werner
- Wijayarathna LS
- Williams Omolara
- Wilson Ling
- Wilson Michael
- Wilson Michael
- Wimalge PMSN
- Wogensen Fredrik
- Wolf Bernhard
- Wondoh Paul
- Wondoh Paul
- Wong Chui Yee
- Wong Francisca
- Wong Hong Yee
- Wood Greta
- Worku Mengistu
- Worku Tewodros
- Wright Naomi
- Yahaya Muhammad Taqiyuddin
- Yakubu Musah
- Yam Sir Young
- Yang James
- Yap Suhhuey
- Yau Jih Dar
- Ye Joselyn
- Yeang Li Jing
- Yeung Man Hon Andrew
- Yifieyeh Abiboye
- Yildirim Reyyan
- Yip Chingwan
- Ymeri Shpetim
- Yoganathan Pigeneswaren
- Yolcu Sinem
- Yong Guo Liang
- Younis Abobaker
- Youssef Mohamed
- Yuksek Mahmut Arif
- Yusufali Taha
- Zaa'treh Rula
- Zadoroznas Antanas
- Zahran Diaaaldin
- Zakaria Esraay
- Zakaria Mahmoud
- Zakaria Yehia
- Zaki Ahmed
- Zammit Stefan
- Zampitis Nikolaos
- Zani Augusto
- Zani Augusto
- Zanini Nicola
- Zapata Felipe
- Zarb Ciskje
- Zeta Solis Ludwing Alexander
- Zielinski Martin
- Zilinskas Justas
- Zilinskas Justas
- Zilinskas Justas
- Zilinskiene Reda
- Ziubryte Greta
- Zohair Ahmed
- Zuber Markus
- Zuk Grzegorz
- Zulkifli Athirah
- Zumbuhl Lucius
- Publication venue
- 'Elsevier BV'
- Publication date
- 01/01/2018
- Field of study
Background: Surgical site infection (SSI) is one of the most common infections associated with health care, but its importance as a global health priority is not fully understood. We quantified the burden of SSI after gastrointestinal surgery in countries in all parts of the world.
Methods: This international, prospective, multicentre cohort study included consecutive patients undergoing elective or emergency gastrointestinal resection within 2-week time periods at any health-care facility in any country. Countries with participating centres were stratified into high-income, middle-income, and low-income groups according to the UN's Human Development Index (HDI). Data variables from the GlobalSurg 1 study and other studies that have been found to affect the likelihood of SSI were entered into risk adjustment models. The primary outcome measure was the 30-day SSI incidence (defined by US Centers for Disease Control and Prevention criteria for superficial and deep incisional SSI). Relationships with explanatory variables were examined using Bayesian multilevel logistic regression models. This trial is registered with ClinicalTrials.gov, number NCT02662231.
Findings: Between Jan 4, 2016, and July 31, 2016, 13 265 records were submitted for analysis. 12 539 patients from 343 hospitals in 66 countries were included. 7339 (58·5%) patient were from high-HDI countries (193 hospitals in 30 countries), 3918 (31·2%) patients were from middle-HDI countries (82 hospitals in 18 countries), and 1282 (10·2%) patients were from low-HDI countries (68 hospitals in 18 countries). In total, 1538 (12·3%) patients had SSI within 30 days of surgery. The incidence of SSI varied between countries with high (691 [9·4%] of 7339 patients), middle (549 [14·0%] of 3918 patients), and low (298 [23·2%] of 1282) HDI (p < 0·001). The highest SSI incidence in each HDI group was after dirty surgery (102 [17·8%] of 574 patients in high-HDI countries; 74 [31·4%] of 236 patients in middle-HDI countries; 72 [39·8%] of 181 patients in low-HDI countries). Following risk factor adjustment, patients in low-HDI countries were at greatest risk of SSI (adjusted odds ratio 1·60, 95% credible interval 1·05–2·37; p=0·030). 132 (21·6%) of 610 patients with an SSI and a microbiology culture result had an infection that was resistant to the prophylactic antibiotic used. Resistant infections were detected in 49 (16·6%) of 295 patients in high-HDI countries, in 37 (19·8%) of 187 patients in middle-HDI countries, and in 46 (35·9%) of 128 patients in low-HDI countries (p < 0·001).
Interpretation: Countries with a low HDI carry a disproportionately greater burden of SSI than countries with a middle or high HDI and might have higher rates of antibiotic resistance. In view of WHO recommendations on SSI prevention that highlight the absence of high-quality interventional research, urgent, pragmatic, randomised trials based in LMICs are needed to assess measures aiming to reduce this preventable complication
Genomic–transcriptomic evolution in lung cancer and metastasis
- Author
- Abbosh Christopher
- AbdulJabbar Khalid
- Aerts Hugo J. W. L.
- Ahmad Tanya
- Ahmed Asia
- Al Bakir Maise
- Al-Rashed Ali M.
- Al-Sawaf Othman
- Alzetani Aiman
- Ambrose Lyn
- Ang Keng
- Angelova Mihaela
- Ashford Paul
- Asif Mo
- Athanasopoulou Foteini
- Austin Silvia
- Bailey Chris
- Bajaj Amrita
- Bakir Maise Al
- Bandula Steve
- Barbè Vittorio
- Beck Stephan
- Begum Sofina
- Benafif Sarah
- Bentham Robert
- Bhakhri Kunal
- Bhayani Harshil
- Bilancia Rocco
- Birkbak Nicolai J.
- Birkbak Nicolai J.
- Bishop Paul
- Biswas Dhruva
- Black James R. M.
- Blackhall Fiona H.
- Blyth Kevin G.
- Boeing Stefan
- Bola Supreet Kaur
- Boleti Ekaterini
- Booth Sarah
- Borg Elaine
- Boyles Rebecca
- Brown Kate
- Buderi Silviu I.
- Bunkum Abigail
- Campbell Brittany B.
- Carter Mathew
- Castignani Carla
- Cave Judith
- Chain Benny
- Chan Kitty
- Chaturvedi Anshuman
- Chavan Hema
- Chee Serena
- Chen Kezhong
- Chervova Olga
- Cheyne Heather
- Choudhary Junaid
- Chowdhry Mohammed Fiyaz
- Chuter David
- Clark Tristan
- Clements James
- Clipson Alexandra
- Collins-Fekete Charles-Antoine
- Colliver Emma
- Cook Daniel E.
- Crosbie Philip
- Cruickshank Tracey
- Cubitt Laura
- Danson Sarah
- de Carné Trécesson Sophie
- De Sousa Paulo
- Demeulemeester Jonas
- Denner Tamara
- Devaraj Anand
- Dhanda Harjot Kaur
- Dick Craig
- Dietzen Michelle
- Dijkstra Krijn
- Diossy Miklos
- Dive Caroline
- Djearaman Madava
- Doran Helen
- Dulloo Sean
- Duran Marcos Vasquez
- East Philip
- Enfield Katey S. S.
- Ensell Leah
- Escudero Mickael
- Falzon Mary
- Fennell Dean A.
- Fernandes Nadia
- Fontaine Eustace
- Forster Martin D.
- Fraioli Francesco
- Frankell Alexander M.
- Frankell Alexander M.
- Gamble Samuel
- Gilbert Kayleigh
- Gimeno-Valiente Francisco
- Goldman Jacki
- Gomes Fabio
- Gorman Pat
- Gower Nicole
- Granato Felice
- Grapa Anca
- Grigoriadis Kristiana
- Grönroos Eva
- Gálvez-Cancino Felip
- Hackshaw Allan
- Hartley John A.
- Hayward Martin
- Herrero Javier
- Hessey Sonya
- Hewish Madeleine
- Hiley Crispin T.
- Hill Mark S.
- Hill William
- Hobson Philip
- Hodgkinson Jack Davies
- Holding James W.
- Hoogenboom Emilie Martinoni
- Hoxha Elena
- Huebner Ariana
- Hynds Robert E.
- Ingram Papawadee
- Jamal-Hanjani Mariam
- Janes Sam M.
- Jones Thomas P.
- Jordan Simon
- Joseph Leena
- Joshi Vijay
- Kadiri Salma
- Kaniu Daniel
- Kanu Nnennaya
- Karagianni Despoina
- Karamani Angeliki
- Karasaki Takahiro
- Kassiotis George
- Kaufmann Tom L.
- Kerr Alastair
- Kerr Keith M.
- Khalil Mohammed
- Khiroya Reena
- Kilgour Elaine
- Kirk Alan
- Kisistok Judit
- Kostoulas Nikos
- Krebs Matthew G.
- Lacson Christer
- Lam Jie Min
- Lang Danny
- Langman Gerald
- Larose Cadieux Elizabeth
- Lawrence David
- Le Quesne John
- Lee Claudia
- Lee Siow Ming
- Leek Angela
- Leslie Rachel
- Lester Jason F.
- Leung Michelle
- Levi Dina
- Lim Emilia L.
- Lim Emilia L.
- Lim Eric
- Lindsay Colin R.
- Litchfield Kevin
- Litchfield Kevin
- Litovchenko Maria
- Liu Wing Kin
- Lowe Helen L.
- Lu Wei-Ting
- Lucas Olivia
- López Saioa
- MacKenzie Mairead
- Magness Alastair
- Malima Mpho
- Marafioti Teresa
- Marrone Domenic
- Martínez-Ruiz Carlos
- Mastrokalos Gerasimos
- Matharu Gurdeep
- Matos Ignacio Garcia
- McGranahan Nicholas
- McGranahan Nicholas
- Middleton Gary
- Monk Fleur
- Montero Angeles
- Moore David A.
- Moss Stuart
- Mourikis Thanos P.
- Naceur-Lombardelli Cristina
- Naidu Babu
- Nair Arjun
- Naito Yutaka
- Nakas Apostolos
- Navani Neal
- Ng Kevin W.
- Nicholson Andrew G.
- Nicod Jerome
- Novasio Juliette
- Nye Emma
- Oliveira Pedro
- Osman Aya
- Pan Xiaoxi
- Panagiotopoulos Nikolaos
- Papadatos-Pastos Dionysis
- Patel Akshay J.
- Patrini Davide
- Pawlik Piotr
- Pearce David R.
- Peggs Karl S.
- Pich Oriol
- Pilotti Camilla
- Price Gillian
- Priest Lynsey
- Primrose Lindsay
- Procter Alexander James
- Proli Chiara
- Prymas Paulina
- Puttick Clare
- Quezada Sergio A.
- Rammohan Kendadai
- Ramsden Zoe
- Rane Jayant K.
- Rathinam Sridhar
- Raubenheimer Hilgardt
- Reading James L.
- Rice Alexandra
- Richard Corentin
- Richards Jennifer
- Richardson Shirley
- Riley Joan
- Robinson Lily
- Rosenthal Rachel
- Rothwell Dominic G.
- Rowan Andrew
- Royle Gary
- Russell Peter
- Saghafinia Sadegh
- Salgado Roberto
- Scarci Marco
- Scarlett Lydia
- Schwarz Roland F.
- Scotland Molly
- Selvaraju Kayalvizhi
- Shackcloth Michael J.
- Shackleford Helen
- Shah Mansi
- Shah Pratibha
- Shah Rajesh
- Sharp Abigail
- Shaw Jacqui A.
- Sivakumar Monica
- Smith Elaine
- Smith Sean
- Sodha-Ramdeen Azmina
- Sokac Mateo
- Spanswick Victoria
- Stavrou Georgia
- Stephens Robert C. M.
- Stewart Aengus
- Stone Richard Kevin
- Summers Yvonne
- Sunderland Mariana Werner
- Swanton Charles
- Swanton Charles
- Szallasi Zoltan
- Tanić Miljana
- Taylor Magali N.
- Thakkar Krupa
- Thakrar Ricky M.
- Thol Kerstin
- Thomas Mathew
- Toncheva Antonia
- Totten Nicola
- Tufail Mohamad
- Tugwood Jonathan
- Ung Seng Kuong Anakin
- Van Loo Peter
- Van Loo Peter
- Vanloo Sharon
- Veeriah Selvaraju
- Veiga Catarina
- Vendramin Roberto
- Ward Sophia
- Watkins Thomas B. K.
- Weeden Clare E.
- Wilson Claire
- Wilson Gareth A.
- Wilson James
- Wong Yien Ning Sophia
- Wu Yin
- Yuan Yinyin
- Zaccaria Simone
- Zhai Haoran
- Zhang Hanyun
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 20/04/2023
- Field of study
Intratumour heterogeneity (ITH) fuels lung cancer evolution, which leads to immune evasion and resistance to therapy. Here, using paired whole-exome and RNA sequencing data, we investigate intratumour transcriptomic diversity in 354 non-small cell lung cancer tumours from 347 out of the first 421 patients prospectively recruited into the TRACERx study. Analyses of 947 tumour regions, representing both primary and metastatic disease, alongside 96 tumour-adjacent normal tissue samples implicate the transcriptome as a major source of phenotypic variation. Gene expression levels and ITH relate to patterns of positive and negative selection during tumour evolution. We observe frequent copy number-independent allele-specific expression that is linked to epigenomic dysfunction. Allele-specific expression can also result in genomic–transcriptomic parallel evolution, which converges on cancer gene disruption. We extract signatures of RNA single-base substitutions and link their aetiology to the activity of the RNA-editing enzymes ADAR and APOBEC3A, thereby revealing otherwise undetected ongoing APOBEC activity in tumours. Characterizing the transcriptomes of primary–metastatic tumour pairs, we combine multiple machine-learning approaches that leverage genomic and transcriptomic variables to link metastasis-seeding potential to the evolutionary context of mutations and increased proliferation within primary tumour regions. These results highlight the interplay between the genome and transcriptome in influencing ITH, lung cancer evolution and metastasis
The evolution of lung cancer and impact of subclonal selection in TRACERx
- Author
- Abbosh Christopher
- AbdulJabbar Khalid
- Aerts Hugo J. W. L.
- Ahmad Tanya
- Ahmed Asia
- Al Bakir Maise
- Al-Sawaf Othman
- Alzetani Aiman
- Ambrose Lyn
- Ang Keng
- Angelova Mihaela
- Ashford Paul
- Asif Mo
- Athanasopoulou Foteini
- Austin Silvia
- Bailey Chris
- Bajaj Amrita
- Bandula Steve
- Barbè Vittorio
- Beck Stephan
- Begum Sofina
- Benafif Sarah
- Bentham Robert
- Bhakhri Kunal
- Bhayani Harshil
- Bilancia Rocco
- Birkbak Nicolai J.
- Bishop Paul
- Biswas Dhruva
- Black James R. M.
- Blackhall Fiona H.
- Blyth Kevin G.
- Boeing Stefan
- Bola Supreet Kaur
- Boleti Ekaterini
- Booth Sarah
- Borg Elaine
- Boyles Rebecca
- Brown Kate
- Buderi Silviu I.
- Bunkum Abigail
- Campbell Brittany B.
- Carter Mathew
- Castignani Carla
- Cave Judith
- Chain Benny
- Chan Kitty
- Chaturvedi Anshuman
- Chavan Hema
- Chee Serena
- Chen Kezhong
- Chervova Olga
- Cheyne Heather
- Choudhary Junaid
- Chowdhry Mohammed Fiyaz
- Chuter David
- Clark Tristan
- Clipson Alexandra
- Collins-Fekete Charles-Antoine
- Colliver Emma
- Cook Daniel E.
- Crosbie Philip
- Cruickshank Tracey
- Danson Sarah
- De Sousa Paulo
- Demeulemeester Jonas
- Denner Tamara
- Devaraj Anand
- Dhanda Harjot Kaur
- Dick Craig
- Dietzen Michelle
- Dijkstra Krijn
- Diossy Miklos
- Dive Caroline
- Djearaman Madava
- Doran Helen
- Dulloo Sean
- Enfield Katey S. S.
- Ensell Leah
- Escudero Mickael
- Falzon Mary
- Fennell Dean A.
- Fernandes Nadia
- Fontaine Eustace
- Forster Martin D.
- Fraioli Francesco
- Frankell Alexander M.
- Gamble Samuel
- Gilbert Kayleigh
- Gimeno-Valiente Francisco
- Goldman Jacki
- Gomes Fabio
- Gorman Pat
- Gower Nicole
- Granato Felice
- Grapa Anca
- Grigoriadis Kristiana
- Grönroos Eva
- Gálvez-Cancino Felip
- Hackshaw Allan
- Hartley John A.
- Hayward Martin
- Herrero Javier
- Hessey Sonya
- Hewish Madeleine
- Hiley Crispin T.
- Hill Mark S.
- Hill William
- Hobson Philip
- Hodgkinson Jack Davies
- Holding James W.
- Hoxha Elena
- Huebner Ariana
- Hynds Robert E.
- Ingram Papawadee
- Jamal-Hanjani Mariam
- Janes Sam M.
- Jordan Simon
- Joseph Leena
- Joshi Vijay
- Kadiri Salma
- Kaniu Daniel
- Kanu Nnennaya
- Karagianni Despoina
- Karamani Angeliki
- Karasaki Takahiro
- Kassiotis George
- Kaufmann Tom L.
- Kerr Alastair
- Kerr Keith M.
- Khalil Mohammed
- Khiroya Reena
- Kilgour Elaine
- Kirk Alan
- Kisistok Judit
- Kostoulas Nikos
- Krebs Matthew G.
- Lacson Christer
- Lam Jie Min
- Langman Gerald
- Larose Cadieux Elizabeth
- Lawrence David
- Le Quesne John
- Le Quesne John
- Lee Claudia
- Lee Siow Ming
- Leek Angela
- Leslie Rachel
- Lester Jason F.
- Leung Michelle
- Levi Dina
- Lim Emilia L.
- Lim Eric
- Lindsay Colin R.
- Litchfield Kevin
- Litovchenko Maria
- Liu Wing Kin
- Lowe Helen L.
- Lu Wei-Ting
- Lucas Olivia
- López Saioa
- MacKenzie Mairead
- Magness Alastair
- Malima Mpho
- Marafioti Teresa
- Marrone Domenic
- Martinoni Hoogenboom Emilie
- Martínez-Ruiz Carlos
- Mastrokalos Gerasimos
- Matharu Gurdeep
- Matos Ignacio
- McGranahan Nicholas
- Middleton Gary
- Miedema Daniël M.
- Monk Fleur
- Montero Angeles
- Moore David A.
- Moss Stuart
- Mourikis Thanos P.
- Naceur-Lombardelli Cristina
- Naidu Babu
- Nair Arjun
- Naito Yutaka
- Nakas Apostolos
- Navani Neal
- Ng Kevin W.
- Nicholson Andrew G.
- Nicod Jerome
- Novasio Juliette
- Nye Emma
- Oliveira Pedro
- Osman Aya
- Pan Xiaoxi
- Panagiotopoulos Nikolaos
- Papadatos-Pastos Dionysis
- Patel Akshay J.
- Patrini Davide
- Pawlik Piotr
- Pearce David R.
- Peggs Karl S.
- Pich Oriol
- Pilotti Camilla
- Price Gillian
- Priest Lynsey
- Primrose Lindsay
- Procter Alexander James
- Proli Chiara
- Prymas Paulina
- Puttick Clare
- Quezada Sergio A.
- Rammohan Kendadai
- Ramsden Zoe
- Rane Jayant K.
- Rathinam Sridhar
- Raubenheimer Hilgardt
- Reading James L.
- Rice Alexandra
- Richard Corentin
- Richards Jennifer
- Richardson Shirley
- Riley Joan
- Robinson Lily
- Rosenthal Rachel
- Rothwell Dominic G.
- Rowan Andrew
- Royle Gary
- Russell Peter
- Saghafinia Sadegh
- Salgado Roberto
- Scarci Marco
- Scarlett Lydia
- Schwarz Roland F.
- Scotland Molly
- Selvaraju Kayalvizhi
- Shackcloth Michael J.
- Shackleford Helen
- Shah Mansi
- Shah Pratibha
- Shah Rajesh
- Sharp Abigail
- Shaw Jacqui A.
- Sivakumar Monica
- Smith Elaine
- Smith Jon
- Smith Sean
- Sodha-Ramdeen Azmina
- Sokac Mateo
- Spanswick Victoria
- Stavrou Georgia
- Stephens Robert CM.
- Stewart Aengus
- Stone Richard Kevin
- Summers Yvonne
- Swanton Charles
- Szallasi Zoltan
- Tanić Miljana
- Taylor Magali N.
- Thakkar Krupa
- Thakrar Ricky M.
- Thol Kerstin
- Thomas Mathew
- Toncheva Antonia
- Totten Nicola
- Tufail Mohamad
- Tugwood Jonathan
- Ung Seng Kuong Anakin
- Van Loo Peter
- Van Loo Peter
- Vanloo Sharon
- Vasquez Marcos
- Veeriah Selvaraju
- Veiga Catarina
- Vendramin Roberto
- Ward Sophia
- Watkins Thomas B. K.
- Weeden Clare E.
- Werner Sunderland Mariana
- Wilson Claire
- Wilson Gareth A.
- Wilson James
- Wong Yien Ning Sophia
- Wu Yin
- Xing Wei
- Yuan Yinyin
- Zaccaria Simone
- Zhai Haoran
- Zhang Hanyun
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 20/04/2023
- Field of study
Lung cancer is the leading cause of cancer-associated mortality worldwide. Here we analysed 1,644 tumour regions sampled at surgery or during follow-up from the first 421 patients with non-small cell lung cancer prospectively enrolled into the TRACERx study. This project aims to decipher lung cancer evolution and address the primary study endpoint: determining the relationship between intratumour heterogeneity and clinical outcome. In lung adenocarcinoma, mutations in 22 out of 40 common cancer genes were under significant subclonal selection, including classical tumour initiators such as TP53 and KRAS. We defined evolutionary dependencies between drivers, mutational processes and whole genome doubling (WGD) events. Despite patients having a history of smoking, 8% of lung adenocarcinomas lacked evidence of tobacco-induced mutagenesis. These tumours also had similar detection rates for EGFR mutations and for RET, ROS1, ALK and MET oncogenic isoforms compared with tumours in never-smokers, which suggests that they have a similar aetiology and pathogenesis. Large subclonal expansions were associated with positive subclonal selection. Patients with tumours harbouring recent subclonal expansions, on the terminus of a phylogenetic branch, had significantly shorter disease-free survival. Subclonal WGD was detected in 19% of tumours, and 10% of tumours harboured multiple subclonal WGDs in parallel. Subclonal, but not truncal, WGD was associated with shorter disease-free survival. Copy number heterogeneity was associated with extrathoracic relapse within 1 year after surgery. These data demonstrate the importance of clonal expansion, WGD and copy number instability in determining the timing and patterns of relapse in non-small cell lung cancer and provide a comprehensive clinical cancer evolutionary data resource
The evolution of non-small cell lung cancer metastases in TRACERx
- Author
- Abbosh Christopher
- AbdulJabbar Khalid
- Aerts Hugo J. W. L.
- Ahmad Tanya
- Ahmed Asia
- Akther Mita
- Al Bakir Maise
- Al-Sawaf Othman
- Alzetani Aiman
- Ambrose Lyn
- Ang Keng
- Angelova Mihaela
- Ashford Paul
- Asif Mo
- Athanasopoulou Foteini
- Austin Silvia
- Bailey Chris
- Bajaj Amrita
- Bandula Steve
- Barbè Vittorio
- Beck Stephan
- Begum Sofina
- Benafif Sarah
- Bentham Robert
- Bhakhri Kunal
- Bhayani Harshil
- Bilancia Rocco
- Birkbak Nicolai J.
- Bishop Paul
- Biswas Dhruva
- Black James R. M.
- Blackhall Fiona H.
- Blyth Kevin G.
- Boeing Stefan
- Bola Supreet Kaur
- Boleti Ekaterini
- Booth Sarah
- Borg Elaine
- Boyles Rebecca
- Brown Kate
- Buderi Silviu I.
- Bunkum Abigail
- Campbell Brittany B.
- Carter Mathew
- Castignani Carla
- Cave Judith
- Chain Benny
- Chan Kitty
- Chaturvedi Anshuman
- Chavan Hema
- Chee Serena
- Chen Kezhong
- Chervova Olga
- Cheyne Heather
- Choudhary Junaid
- Chowdhry Mohammed Fiyaz
- Chuter David
- Clark Tristan
- Clipson Alexandra
- Collins-Fekete Charles-Antoine
- Colliver Emma
- Cook Daniel E.
- Crosbie Philip
- Cruickshank Tracey
- Danson Sarah
- De Sousa Paulo
- Demeulemeester Jonas
- Denner Tamara
- Devaraj Anand
- Dhanda Harjot Kaur
- Dick Craig
- Dietzen Michelle
- Dijkstra Krijn
- Diossy Miklos
- Dive Caroline
- Djearaman Madava
- Doran Helen
- Dulloo Sean
- Enfield Katey S. S.
- Ensell Leah
- Escudero Mickael
- Falzon Mary
- Fennell Dean A.
- Fernandes Nadia
- Fontaine Eustace
- Forster Martin D.
- Fraioli Francesco
- Frankell Alexander M.
- Gamble Samuel
- Gilbert Kayleigh
- Gimeno-Valiente Francisco
- Goldman Jacki
- Gomes Fabio
- Gorman Pat
- Gower Nicole
- Granato Felice
- Grapa Anca
- Grigoriadis Kristiana
- Grönroos Eva
- Gálvez-Cancino Felip
- Hackshaw Allan
- Hartley John A.
- Hayward Martin
- Herrero Javier
- Hessey Sonya
- Hewish Madeleine
- Hiley Crispin T.
- Hill Mark S.
- Hill William
- Hobson Philip
- Hodgkinson Jack Davies
- Holding James W.
- Hoxha Elena
- Huebner Ariana
- Hynds Robert E.
- Ingram Papawadee
- Jamal-Hanjani Mariam
- Janes Sam M.
- Johnson Diana
- Jordan Simon
- Joseph Leena
- Joshi Vijay
- Kadiri Salma
- Kaniu Daniel
- Kanu Nnennaya
- Karagianni Despoina
- Karamani Angeliki
- Karasaki Takahiro
- Kassiotis George
- Kaufmann Tom L.
- Kerr Alastair
- Kerr Keith M.
- Khalil Mohammed
- Khiroya Reena
- Kilgour Elaine
- Kirk Alan
- Kisistok Judit
- Kostoulas Nikos
- Krebs Matthew G.
- Lacson Christer
- Lam Jie Min
- Langman Gerald
- Larose Cadieux Elizabeth
- Lawrence David
- Laycock Joanne
- Le Quesne John
- Lee Claudia
- Lee Siow Ming
- Leek Angela
- Leslie Rachel
- Lester Jason F.
- Leung Michelle
- Levi Dina
- Lim Emilia L.
- Lim Eric
- Lindsay Colin R.
- Litchfield Kevin
- Litovchenko Maria
- Liu Wing Kin
- Lowe Helen L.
- Lu Wei-Ting
- Lucas Olivia
- López Saioa
- MacKenzie Mairead
- Magness Alastair
- Malima Mpho
- Marafioti Teresa
- Marrone Domenic
- Martinoni Hoogenboom Emilie
- Martínez-Ruiz Carlos
- Mastrokalos Gerasimos
- Matharu Gurdeep
- Matos Ignacio
- McGranahan Nicholas
- Middleton Gary
- Monk Fleur
- Montero Angeles
- Moore David A.
- Moss Stuart
- Mourikis Thanos P.
- Naceur-Lombardelli Cristina
- Naidu Babu
- Nair Arjun
- Naito Yutaka
- Nakas Apostolos
- Navani Neal
- Ng Kevin W.
- Nicholson Andrew G.
- Nicod Jerome
- Novasio Juliette
- Nye Emma
- Oliveira Pedro
- Osman Aya
- Pan Xiaoxi
- Panagiotopoulos Nikolaos
- Papadatos-Pastos Dionysis
- Patel Akshay J.
- Patrini Davide
- Pawlik Piotr
- Pearce David R.
- Peggs Karl S.
- Pich Oriol
- Pilotti Camilla
- Price Gillian
- Priest Lynsey
- Primrose Lindsay
- Procter Alexander James
- Proli Chiara
- Prymas Paulina
- Puttick Clare
- Quezada Sergio A.
- Rammohan Kendadai
- Ramsden Zoe
- Rane Jayant K.
- Rathinam Sridhar
- Raubenheimer Hilgardt
- Razaq Maryam
- Reading James L.
- Rice Alexandra
- Richard Corentin
- Richards Jennifer
- Richardson Shirley
- Riley Joan
- Robinson Lily
- Rosenthal Rachel
- Rothwell Dominic G.
- Rowan Andrew
- Royle Gary
- Russell Peter
- Saghafinia Sadegh
- Salgado Roberto
- Scarci Marco
- Scarlett Lydia
- Schwarz Roland F.
- Scotland Molly
- Selvaraju Kayalvizhi
- Shackcloth Michael J.
- Shackleford Helen
- Shah Mansi
- Shah Pratibha
- Shah Rajesh
- Sharp Abigail
- Shaw Jacqui A.
- Sivakumar Monica
- Smith Elaine
- Smith Sean
- Sodha-Ramdeen Azmina
- Sokac Mateo
- Spanswick Victoria
- Stavrou Georgia
- Stephens Robert C. M.
- Stewart Aengus
- Stone Richard Kevin
- Summers Yvonne
- Swanton Charles
- Szallasi Zoltan
- Tanić Miljana
- Taylor Magali N.
- Thakkar Krupa
- Thakrar Ricky M.
- Thol Kerstin
- Thomas Mathew
- Toncheva Antonia
- Totten Nicola
- Tufail Mohamad
- Tugwood Jonathan
- Ung Seng Kuong Anakin
- Van Loo Peter
- Vanloo Sharon
- Vasquez Marcos
- Veeriah Selvaraju
- Veiga Catarina
- Vendramin Roberto
- Ward Sophia
- Watkins Thomas B. K.
- Weeden Clare E.
- Werner Sunderland Mariana
- Wilson Claire
- Wilson Gareth A.
- Wilson James
- Wong Yien Ning Sophia
- Wu Yin
- Yuan Yinyin
- Zaccaria Simone
- Zhai Haoran
- Zhang Hanyun
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 20/04/2023
- Field of study
Metastatic disease is responsible for the majority of cancer-related deaths. We report the longitudinal evolutionary analysis of 126 non-small cell lung cancer (NSCLC) tumours from 421 prospectively recruited patients in TRACERx who developed metastatic disease, compared with a control cohort of 144 non-metastatic tumours. In 25% of cases, metastases diverged early, before the last clonal sweep in the primary tumour, and early divergence was enriched for patients who were smokers at the time of initial diagnosis. Simulations suggested that early metastatic divergence more frequently occurred at smaller tumour diameters (less than 8 mm). Single-region primary tumour sampling resulted in 83% of late divergence cases being misclassified as early, highlighting the importance of extensive primary tumour sampling. Polyclonal dissemination, which was associated with extrathoracic disease recurrence, was found in 32% of cases. Primary lymph node disease contributed to metastatic relapse in less than 20% of cases, representing a hallmark of metastatic potential rather than a route to subsequent recurrences/disease progression. Metastasis-seeding subclones exhibited subclonal expansions within primary tumours, probably reflecting positive selection. Our findings highlight the importance of selection in metastatic clone evolution within untreated primary tumours, the distinction between monoclonal versus polyclonal seeding in dictating site of recurrence, the limitations of current radiological screening approaches for early diverging tumours and the need to develop strategies to target metastasis-seeding subclones before relapse
Antibodies against endogenous retroviruses promote lung cancer immunotherapy
- Author
- Abbosh Christopher
- AbdulJabbar Khalid
- Aerts Hugo J. W. L.
- Ahmad Tanya
- Ahmed Asia
- Al Bakir Maise
- Al-Sawaf Othman
- Almagro Jorge
- Alzetani Aiman
- Ambrose Lyn
- Anastasiou Panayiotis
- Ang Keng
- Angelova Mihaela
- Ashford Paul
- Asif Mo
- Athanasopoulou Foteini
- Attig Jan
- Au Lewis
- Austin Silvia
- Bailey Chris
- Bajaj Amrita
- Bandula Steve
- Banerjee Susana
- Barbè Vittorio
- Beck Stephan
- Begum Sofina
- Behrens Axel
- Benafif Sarah
- Bentham Robert
- Bhakhri Kunal
- Bhayani Harshil
- Bilancia Rocco
- Birkbak Nicolai J.
- Bishop Paul
- Biswas Dhruva
- Black James R. M.
- Blackhall Fiona H.
- Blyth Kevin G.
- Boeing Stefan
- Bola Supreet Kaur
- Boleti Ekaterini
- Boos Laura Amanda
- Booth Sarah
- Borg Elaine
- Boumelha Jesse
- Boyles Rebecca
- Brown Kate
- Buderi Silviu I.
- Bunkum Abigail
- Byrne Fiona
- Campbell Brittany B.
- Carter Mathew
- Castignani Carla
- Cave Judith
- Cha Hongui
- Chain Benny
- Chan Kitty
- Chaturvedi Anshuman
- Chau Ian
- Chavan Hema
- Chee Serena
- Chen Kezhong
- Chervova Olga
- Cheyne Heather
- Choudhary Junaid
- Chowdhry Mohammed Fiyaz
- Chuter David
- Clark Tristan
- Clipson Alexandra
- Collins-Fekete Charles-Antoine
- Colliver Emma
- Cook Daniel E.
- Crosbie Philip
- Cruickshank Tracey
- Cunningham David
- Danson Sarah
- de Carné Trécesson Sophie
- De Sousa Paulo
- Demeulemeester Jonas
- Denner Tamara
- Devaraj Anand
- Dhanda Harjot Kaur
- Dick Craig
- Dietzen Michelle
- Dijkstra Krijn
- Diossy Miklos
- Dive Caroline
- Djearaman Madava
- Doran Helen
- Downward Julian
- Droney Joanne
- Dulloo Sean
- Enfield Katey S. S.
- Ensell Leah
- Escudero Mickael
- Falzon Mary
- Faulkner Nikhil
- Fendler Annika
- Fennell Dean A.
- Fernandes Nadia
- Fontaine Eustace
- Forster Martin D.
- Fraioli Francesco
- Frankell Alexander M.
- Furness Andrew J. S.
- Gamble Samuel
- Gerard Camille L.
- Gilbert Kayleigh
- Gimeno-Valiente Francisco
- Goldman Jacki
- Gomes Fabio
- Gorman Pat
- Gower Nicole
- Granato Felice
- Grapa Anca
- Grigoriadis Kristiana
- Grönroos Eva
- Gálvez-Cancino Felip
- Hackshaw Allan
- Harrington Kevin
- Hartley John A.
- Hayward Martin
- Herrero Javier
- Hessey Sonya
- Hewish Madeleine
- Hiley Crispin T.
- Hill Mark S.
- Hill William
- Hobson Philip
- Hodgkinson Jack Davies
- Holding James W.
- Hoxha Elena
- Huebner Ariana
- Hynds Robert E.
- Ingram Papawadee
- Jamal-Hanjani Mariam
- Janes Sam M.
- Jhanji Shaman
- Jones Robin L.
- Jordan Simon
- Joseph Leena
- Joshi Vijay
- Kadiri Salma
- Kaniu Daniel
- Kanu Nnennaya
- Karagianni Despoina
- Karamani Angeliki
- Karasaki Takahiro
- Kassiotis George
- Kaufmann Tom L.
- Kerr Alastair
- Kerr Keith M.
- Khalil Mohammed
- Khiroya Reena
- Kilgour Elaine
- Kim Hyemin
- Kirk Alan
- Kisistok Judit
- Kostoulas Nikos
- Krebs Matthew G.
- Kumar Sacheen
- Lacson Christer
- Lam Jie Min
- Langman Gerald
- Larkin James
- Larose Cadieux Elizabeth
- Lawrence David
- Le Quesne John
- Lee Claudia
- Lee Se-Hoon
- Lee Siow Ming
- Leek Angela
- Leslie Rachel
- Lester Jason F.
- Leung Michelle
- Levi Dina
- Lim Emilia L.
- Lim Eric
- Lindsay Colin R.
- Litchfield Kevin
- Litovchenko Maria
- Liu Wing Kin
- Lowe Helen L.
- Lu Wei-Ting
- Lucas Olivia
- López Saioa
- MacKenzie Mairead
- Magness Alastair
- Magno Neil
- Malima Mpho
- Marafioti Teresa
- Marrone Domenic
- Martinoni Hoogenboom Emilie
- Martínez-Ruiz Carlos
- Mastrokalos Gerasimos
- Matharu Gurdeep
- Matos Ignacio
- McGranahan Nicholas
- Messiou Christina
- Middleton Gary
- Molina-Arcas Miriam
- Monk Fleur
- Montero Angeles
- Moore David A.
- Moss Stuart
- Mourikis Thanos P.
- Naceur-Lombardelli Cristina
- Naidu Babu
- Nair Arjun
- Naito Yutaka
- Nakas Apostolos
- Navani Neal
- Ng Kevin W.
- Nicholson Andrew G.
- Nicholson Emma
- Nicod Jerome
- Novasio Juliette
- Nye Emma
- Okines Alicia
- Oliveira Pedro
- Osman Aya
- Pan Xiaoxi
- Panagiotopoulos Nikolaos
- Papadatos-Pastos Dionysis
- Patel Akshay J.
- Patrini Davide
- Pawlik Piotr
- Pearce David R.
- Peggs Karl S.
- Pich Oriol
- Pickering Lisa
- Pilotti Camilla
- Popat Sanjay
- Price Gillian
- Priest Lynsey
- Primrose Lindsay
- Procter Alexander James
- Proli Chiara
- Prymas Paulina
- Puttick Clare
- Quezada Sergio A.
- Rammohan Kendadai
- Ramsden Zoe
- Rane Jayant K.
- Rathinam Sridhar
- Raubenheimer Hilgardt
- Reading James L.
- Reid Alison
- Rice Alexandra
- Richard Corentin
- Richards Jennifer
- Richardson Shirley
- Riley Joan
- Robinson Lily
- Rosenthal Rachel
- Rothwell Dominic G.
- Rowan Andrew
- Royle Gary
- Russell Peter
- Saghafinia Sadegh
- Salgado Roberto
- Scarci Marco
- Scarlett Lydia
- Schmitt Andreas M.
- Schwarz Roland F.
- Scotland Molly
- Selvaraju Kayalvizhi
- Shackcloth Michael J.
- Shackleford Helen
- Shah Mansi
- Shah Pratibha
- Shah Rajesh
- Sharp Abigail
- Shaw Jacqui A.
- Shepherd Scott T. C.
- Shim Seohee
- Shum Benjamin
- Sivakumar Monica
- Smith Elaine
- Smith Sean
- Sodha-Ramdeen Azmina
- Sokac Mateo
- Spanswick Victoria
- Starling Naureen
- Stavrou Georgia
- Stephens Robert C. M.
- Stewart Aengus
- Stone Richard Kevin
- Summers Yvonne
- Swanton Charles
- Swerdlow Anthony
- Szallasi Zoltan
- Tanić Miljana
- Tatham Kate C.
- Taylor Magali N.
- Thakkar Krupa
- Thakrar Ricky M.
- Thol Kerstin
- Thomas Mathew
- Toncheva Antonia
- Totten Nicola
- Tufail Mohamad
- Tugwood Jonathan
- Turajlic Samra
- Turner Nicholas
- Ung Seng Kuong Anakin
- Van Loo Peter
- Vanloo Sharon
- Vasquez Marcos
- Veeriah Selvaraju
- Veiga Catarina
- Vendramin Roberto
- Ward Sophia
- Watkins Thomas B. K.
- Weeden Clare E.
- Welsh Liam
- Werner Sunderland Mariana
- Wilkinson Katalin A.
- Wilkinson Robert J.
- Wilson Claire
- Wilson Gareth A.
- Wilson James
- Wong Yien Ning Sophia
- Wu Yin
- Young George
- Young Kate
- Yousaf Nadia
- Yuan Yinyin
- Zaccaria Simone
- Zhai Haoran
- Zhang Hanyun
- Publication venue
- 'Springer Science and Business Media LLC'
- Publication date
- 20/04/2023
- Field of study
B cells are frequently found in the margins of solid tumours as organized follicles in ectopic lymphoid organs called tertiary lymphoid structures (TLS). Although TLS have been found to correlate with improved patient survival and response to immune checkpoint blockade (ICB), the underlying mechanisms of this association remain elusive. Here we investigate lung-resident B cell responses in patients from the TRACERx 421 (Tracking Non-Small-Cell Lung Cancer Evolution Through Therapy) and other lung cancer cohorts, and in a recently established immunogenic mouse model for lung adenocarcinoma. We find that both human and mouse lung adenocarcinomas elicit local germinal centre responses and tumour-binding antibodies, and further identify endogenous retrovirus (ERV) envelope glycoproteins as a dominant anti-tumour antibody target. ERV-targeting B cell responses are amplified by ICB in both humans and mice, and by targeted inhibition of KRAS(G12C) in the mouse model. ERV-reactive antibodies exert anti-tumour activity that extends survival in the mouse model, and ERV expression predicts the outcome of ICB in human lung adenocarcinoma. Finally, we find that effective immunotherapy in the mouse model requires CXCL13-dependent TLS formation. Conversely, therapeutic CXCL13 treatment potentiates anti-tumour immunity and synergizes with ICB. Our findings provide a possible mechanistic basis for the association of TLS with immunotherapy response