퇴행성 슬 관절염의 객관적 평가를 위한 기계학습 기반의 보행 데이터 분석 연구

학위논문 (박사) -- 서울대학교 대학원 : 공과대학 협동과정 바이오엔지니어링전공, 2020. 8. 김희찬.Osteoarthritis (OA) is a disease that affects above 30% of the elderly population aged 60 years and older. Western Ontario and McMaster Osteoarthritis (WOMAC) and radiographic-based Kellgren–Lawrence (KL) grade methods are currently used to evaluate the severity of knee osteoarthritis (KOA). However, the WOMAC is a subjective method which cannot be performed to certain patients, and is not suitable for tracking changes in severity over time. KL grade requires highly trained experts and is a time consuming process. This dissertation hypothesized that objective and biomechanical gait data can supplement unmet needs of current gold standard. It was hypothesized that specific features from gait data would reflect the severity of KOA. Therefore, this study aims to identify key gait features associated with the severity of KOA and provide a new objective and explainable evaluation method for KOA based on gait analysis. Features were extracted from the gait signal and an automated severity evaluation model was designed based on machine learning technique for WOMAC severity evaluation model. To develop an automated severity evaluation algorithm for KL grade, features were extracted from the plain radiography image using deep learning network, and machine learning was applied to select features from the gait data. Both image and gait features were used to develop a machine learning algorithm for KL grade evaluation. The evaluation algorithm for WOMAC and KL grade showed a correlation of 0.741 and an accuracy of 75.2% with gold standard method, respectively. This dissertation proposed a new evaluation method for KOA and showed the clinical utility of the gait data application that was limited in clinical practice due to the complexity of the signal.퇴행성 관절염은 60세 이상의 노인 인구 약 30%에서 발병하는 질병이다. 현재 퇴행성 슬 관절염의 진단은 Western Ontario and McMaster Osteoarthritis (WOMAC) 방법과 방사선 촬영 기반의 Kellgren–Lawrence (KL) grade 방법이 사용되고 있다. 그러나 WOMAC 환자의 주관적인 판단을 토대로 중증도를 정량화하는 방법이어서 일부 환자들에게 적용이 불가능하고, 수술 후의 중증도를 반영하지 못한다는 단점이 있다. KL grade은 고도로 훈련된 전문가를 필요로 하며, 정확한 진단을 위하여서는 많은 시간을 필요로 한다. 반면 보행 신호는 환자의 보행에 따른 객관적인 생체 역학 신호를 제공하며, 보행이 가능한 모든 사람에게 적용이 가능하며, 주기적인 추적 관찰에 용의하다. 따라서 본 연구는 보행 신호를 이용하여 객관적이며, 결과에 대한 생체 역학적 이유를 알 수 있는 퇴행성 슬 관절염의 새로운 분석 방법을 제시함에 있다. 먼저 자동으로 WOMAC 방법을 진단하기 위해 보행신호에서 특징들을 추출하고 기계학습 기법을 이용하여 평가하는 모델을 개발하였다. 또한 KL grade 방법을 평가하기 위해 방사선 영상에서 딥러닝 알고리즘으로 추출한 특징들과 보행신호에서 추출한 특징들을 기계학습 기법을 이용하였다. 제안하는 퇴행성 슬 관절염의 평가 방법은 WOMAC 및 KL grade 방법과 각각 상관관계 0.741, 정확도 75.2%를 보였다. 본 연구는 퇴행성 슬 관절염의 새로운 평가 방법을 제시하였으며, 신호의 복잡성으로 인하여 임상에서 사용되지 못했던 보행 신호의 임상적 활용성을 보여주었다.1. Introduction 1 1.1. Knee Osteoarthritis 2 1.2. Severity Evaluation of Knee Osteoarthritis 4 1.2.1. Symptomatic Severity evaluation 4 1.2.2. Structural Severity evaluation 5 1.3. Unmet Clinical Needs 7 1.4. Gait analysis and KOA 8 1.5. Thesis objectives 12 2. Symptomatic Severity of Knee Osteoarthritis 14 2.1. Introduction 15 2.2. Methods 18 2.2.1. Participants 18 2.2.2. Gait Data Collection 20 2.2.3. Statistical Analysis and WOMAC Estimation Model 21 2.3. Results 25 2.4. Discussion 34 2.5. Conclusion 41 3. Structural Severity of Knee Osteoarthritis 42 3.1. Introduction 43 3.2. Methods 49 3.2.1. Participants 49 3.2.2. Gait Data Collection 52 3.2.3. Radiographic Assessment 53 3.2.4. Feature Extraction and Classification 54 3.3. Results 62 3.3.1. Feature Analysis 62 3.3.2. Deep Learning Approach Based on Radiographic Images 72 3.3.3. Proposed Model Based on Gait Data and Radiographic Images 74 3.4. Discussion 76 3.5. Conclusion 83 4. Conclusion 84 4.1. Thesis Summary and Contributions 85 4.2. Future Direction 87 Bibliography 89 Abstract in Korean 98Docto

Redirected Walking in Infinite Virtual Indoor Environment Using Change-blindness

We present a change-blindness based redirected walking algorithm that allows a user to explore on foot a virtual indoor environment consisting of an infinite number of rooms while at the same time ensuring collision-free walking for the user in real space. This method uses change blindness to scale and translate the room without the user's awareness by moving the wall while the user is not looking. Consequently, the virtual room containing the current user always exists in the valid real space. We measured the detection threshold for whether the user recognizes the movement of the wall outside the field of view. Then, we used the measured detection threshold to determine the amount of changing the dimension of the room by moving that wall. We conducted a live-user experiment to navigate the same virtual environment using the proposed method and other existing methods. As a result, users reported higher usability, presence, and immersion when using the proposed method while showing reduced motion sickness compared to other methods. Hence, our approach can be used to implement applications to allow users to explore an infinitely large virtual indoor environment such as virtual museum and virtual model house while simultaneously walking in a small real space, giving users a more realistic experience.Comment: https://www.youtube.com/watch?v=s-ZKavhXxd

An Energy-Efficient Algorithm for Classification of Fall Types Using a Wearable Sensor

Objective: To mitigate damage from falls, it is essential to provide medical attention expeditiously. Many previous studies have focused on detecting falls and have shown that falls can be accurately detected at least in a laboratory setting. However, a very few studies have classified the different types of falls. To this end, in this paper, a novel energy-efficient algorithm that can discriminate the five most common fall types was developed for wearable systems. Methods: A wearable system with an inertial measurement unit sensor was first developed. Then, our novel algorithm, temporal signal angle measurement (TSAM), was used to classify the different types of falls at various sampling frequencies, and the results were compared with those from three different machine learning algorithms. Results: The overall performance of the TSAM and that of the machine learning algorithms were similar. However, the TSAM outperformed the machine learning algorithms at frequencies in the range of 10-20 Hz. As the sampling frequency dropped from 200 to 10Hz, the accuracy of the TSAM ranged from 93.3% to 91.8%. The sensitivity and specificity ranges from 93.3% to 91.8%, and 98.3% to 97.9%, respectively for the same frequency range. Conclusion: Our algorithm can be utilized with energy-efficient wearable devices at low sampling frequencies to classify different types of falls. Significance: Our system can expedite medical assistance in emergency situations caused by falls by providing the necessary information to medical doctors or clinicians.1

Pathogenesis of Korean SapelovirusA in piglets and chicks.

Sapelovirus A (SV-A), formerly known as porcine sapelovirus as a member of a new genus Sapelovirus, is known to cause enteritis, pneumonia, polioencephalomyelitis and reproductive disorders in pigs. We have recently identified α2,3-linked sialic acid on GD1a ganglioside as a functional SV-A receptor rich in the cells of pigs and chickens. However, the role of GD1a in viral pathogenesis remains elusive. Here, we demonstrated that a Korean SV-A strain could induce diarrhoea and intestinal pathology in piglets but not in chicks. Moreover, this Korean SV-A strain had mild extra-intestinal tropisms appearing as mild, non-suppurative myelitis, encephalitis and pneumonia in piglets, but not in chicks. By real-time reverse transcription (RT) PCR, higher viral RNA levels were detected in faecal samples than in sera or extra-intestinal organs from virus-inoculated piglets. Immunohistochemistry confirmed that high viral antigens were detected in the epithelial cells of intestines from virus-inoculated piglets but not from chicks. This Korean SV-A strain could bind the cultured cell lines originated from various species, but replication occurred only in cells of porcine origin. These data indicated that this Korean SV-A strain could replicate and induce pathology in piglets but not in chicks, suggesting that additional porcine-specific factors are required for virus entry and replication. In addition, this Korean SV-A strain is enteropathogenic, but could spread to the bloodstream from the gut and disseminate to extra-intestinal organs and tissues. These results will contribute to our understanding of SV-A pathogenesis so that efficient anti-sapelovirus drugs and vaccines could be developed in the future.This study was supported by a grant (2014R1A2A2A01004292) of the Basic Science Research Program through the National Research Foundation of Korea (NRF) funded by the Ministry of Science, ICT and Future Planning, Bio-industry Technology Development Program (315021-04) through the Korea Institute of Planning and Evaluation for Technology in Food, Agriculture, Forestry and Fisheries (iPET) funded by the Ministry of Agriculture, Food and Rural Affairs, and Korea Basic Science Institute grant (C33730), Republic of Korea. IG is a Wellcome Senior Fellow supported by the Wellcome Trust (097997/Z/11/Z). Chonnam National University provided funding to Mun-Il Kang (2012). The Mab against SV-A capsid protein was received as a generous gift from Dr. M. Dauber (Friedrich-Loeffler Institute, Germany).This is the accepted version of the article. The final version is available from the Microbiology Society via http://dx.doi.org/10.1099/jgv.0.00057

Two-Year clinical outcomes after coronary bifurcation stenting in older patients from Korea and Italy

BackgroundOlder patients who treated by percutaneous coronary intervention (PCI) are at a higher risk of adverse cardiac outcomes. We sought to investigate the clinical impact of bifurcation PCI in older patients from Korea and Italy.MethodsWe selected 5,537 patients who underwent bifurcation PCI from the BIFURCAT (comBined Insights from the Unified RAIN and COBIS bifurcAtion regisTries) database. The primary outcome was a composite of target vessel myocardial infarction, clinically driven target lesion revascularization, and stent thrombosis at two years.ResultsIn patients aged ≥75 years, the mean age was 80.1 ± 4.0 years, 65.2% were men, and 33.7% had diabetes. Older patients more frequently presented with chronic kidney disease (CKD), severe coronary calcification, and left main coronary artery disease (LMCA). During a median follow-up of 2.1 years, older patients showed similar adverse clinical outcomes compared to younger patients (the primary outcome, 5.7% vs. 4.5%; p = 0.21). Advanced age was not an independent predictor of the primary outcome (p = 0.93) in overall patients. Both CKD and LMCA were independent predictors regardless of age group.ConclusionsOlder patients (≥75 years) showed similar clinical outcomes to those of younger patients after bifurcation PCI. Advanced age alone should not deter physicians from performing complex PCIs for bifurcation disease

Impacts of the Tropical Pacific/Indian Oceans on the Seasonal Cycle of the West African Monsoon

The current consensus is that drought has developed in the Sahel during the second half of the twentieth century as a result of remote effects of oceanic anomalies amplified by local land–atmosphere interactions. This paper focuses on the impacts of oceanic anomalies upon West African climate and specifically aims to identify those from SST anomalies in the Pacific/Indian Oceans during spring and summer seasons, when they were significant. Idealized sensitivity experiments are performed with four atmospheric general circulation models (AGCMs). The prescribed SST patterns used in the AGCMs are based on the leading mode of covariability between SST anomalies over the Pacific/Indian Oceans and summer rainfall over West Africa. The results show that such oceanic anomalies in the Pacific/Indian Ocean lead to a northward shift of an anomalous dry belt from the Gulf of Guinea to the Sahel as the season advances. In the Sahel, the magnitude of rainfall anomalies is comparable to that obtained by other authors using SST anomalies confined to the proximity of the Atlantic Ocean. The mechanism connecting the Pacific/Indian SST anomalies with West African rainfall has a strong seasonal cycle. In spring (May and June), anomalous subsidence develops over both the Maritime Continent and the equatorial Atlantic in response to the enhanced equatorial heating. Precipitation increases over continental West Africa in association with stronger zonal convergence of moisture. In addition, precipitation decreases over the Gulf of Guinea. During the monsoon peak (July and August), the SST anomalies move westward over the equatorial Pacific and the two regions where subsidence occurred earlier in the seasons merge over West Africa. The monsoon weakens and rainfall decreases over the Sahel, especially in August.Peer reviewe

Search for heavy resonances decaying to two Higgs bosons in final states containing four b quarks

A search is presented for narrow heavy resonances X decaying into pairs of Higgs bosons (H) in proton-proton collisions collected by the CMS experiment at the LHC at root s = 8 TeV. The data correspond to an integrated luminosity of 19.7 fb(-1). The search considers HH resonances with masses between 1 and 3 TeV, having final states of two b quark pairs. Each Higgs boson is produced with large momentum, and the hadronization products of the pair of b quarks can usually be reconstructed as single large jets. The background from multijet and t (t) over bar events is significantly reduced by applying requirements related to the flavor of the jet, its mass, and its substructure. The signal would be identified as a peak on top of the dijet invariant mass spectrum of the remaining background events. No evidence is observed for such a signal. Upper limits obtained at 95 confidence level for the product of the production cross section and branching fraction sigma(gg -> X) B(X -> HH -> b (b) over barb (b) over bar) range from 10 to 1.5 fb for the mass of X from 1.15 to 2.0 TeV, significantly extending previous searches. For a warped extra dimension theory with amass scale Lambda(R) = 1 TeV, the data exclude radion scalar masses between 1.15 and 1.55 TeV

Measurement of the top quark mass using charged particles in pp collisions at root s=8 TeV

Peer reviewe