Complexity and robustness of the flavonoid transcriptional regulatory network revealed by comprehensive analyses of MYB-bHLH-WDR complexes and their targets in Arabidopsis seed.

In Arabidopsis thaliana, proanthocyanidins (PAs) accumulate in the innermost cell layer of the seed coat (i.e. endothelium, chalaza and micropyle). The expression of the biosynthetic genes involved relies on the transcriptional activity of R2R3-MYB and basic helix-loop-helix (bHLH) proteins which form ternary complexes (\u27MBW\u27) with TRANSPARENT TESTA GLABRA1 (TTG1) (WD repeat protein). The identification of the direct targets and the determination of the nature and spatio-temporal activity of these MBW complexes are essential steps towards a comprehensive understanding of the transcriptional mechanisms that control flavonoid biosynthesis. In this study, various molecular, genetic and biochemical approaches were used. Here, we have demonstrated that, of the 12 studied genes of the pathway, only dihydroflavonol-4-reductase (DFR), leucoanthocyanidin dioxygenase (LDOX), BANYULS (BAN), TRANSPARENT TESTA 19 (TT19), TT12 and H(+) -ATPase isoform 10 (AHA10) are direct targets of the MBW complexes. Interestingly, although the TT2-TT8-TTG1 complex plays the major role in developing seeds, three additional MBW complexes (i.e. MYB5-TT8-TTG1, TT2-EGL3-TTG1 and TT2-GL3-TTG1) were also shown to be involved, in a tissue-specific manner. Finally, a minimal promoter was identified for each of the target genes of the MBW complexes. Altogether, by answering fundamental questions and by demonstrating or invalidating previously made hypotheses, this study provides a new and comprehensive view of the transcriptional regulatory mechanisms controlling PA and anthocyanin biosynthesis in Arabidopsis

Investigation of binding affinity of a broad array of L-fucosides with six fucose-specific lectins from bacterial and fungal origin

Series of multivalent α-L-fucoside containing glycoclusters and variously decorated L-fucosides were synthesized to find potential inhibitors of fucose-specific lectins and study the structure-binding affinity relationships. Tri- and tetravalent fucoclusters were built up using copper-mediated azide-alkyne click chemistry. Series of fucoside monomers and dimers were synthesized using various methods, namely glycosylation, azide-alkyne click reaction, photoinduced thiol-en addition and sulfation. The interactions of compounds with six fucolectins of bacterial or fungal origin were tested using hemagglutination inhibition assay. As a result, a tetravalent, α-L-fucose presenting glycocluster showed to be orders of magnitude better ligand than a simple monosaccharide for tested lectins in most cases, which can nominate it as a universal ligand for studied lectins. This compound was also able to inhibit adhesion of Pseudomonas aeruginosa cells to human epithelial bronchial cells. A trivalent fucocluster with protected amine functional group seems also to be a promising candidate to design glycoconjugates and chimeras

Investigation of the Binding Affinity of a Broad Array of l-Fucosides with Six Fucose-Specific Lectins of Bacterial and Fungal Origin

L

A new system for fast and quantitative analysis of heterologous gene expression in plants

Large-scale analysis of transcription factor–cis-acting element interactions in plants, or the dissection of complex transcriptional regulatory mechanisms, requires rapid, robust and reliable systems for the quantification of gene expression.Here, we describe a new system for transient expression analysis of transcription factors, which takes advantage of the fast and easy production and transfection of Physcomitrella patens protoplasts, coupled to flow cytometry quantification of a fluorescent protein (green fluorescent protein). Two small-sized and high-copy Gateway® vectors were specifically designed, although standard binary vectors can also be employed. As a proof of concept, the regulation of BANYULS (BAN), a key structural gene involved in proanthocyanidin biosynthesis in Arabidopsis thaliana seeds, was used. In P. patens, BAN expression is activated by a complex composed of three proteins (TT2/AtMYB123, TT8/bHLH042 and TTG1), and is inhibited by MYBL2, a transcriptional repressor, as in Arabidopsis. Using this approach, two new regulatory sequences that are necessary and sufficient for specific BAN expression in proanthocyanidin-accumulating cells were identified. This one hybrid-like plant system was successfully employed to quantitatively assess the transcriptional activity of four regulatory proteins, and to identify their target recognition sites on the BAN promoter

MORB generation beneath the ultraslow spreading Southwest Indian Ridge (9–25°E) : major element chemistry and the importance of process versus source

Author Posting. © American Geophysical Union, 2008. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geochemistry Geophysics Geosystems 9 (2008): Q05004, doi:10.1029/2008GC001959.We report highly variable mid-ocean ridge basalt (MORB) major element and water concentrations from a single 1050-km first-order spreading segment on the ultraslow spreading Southwest Indian Ridge, consisting of two supersegments with strikingly different spreading geometry and ridge morphology. To the east, the 630 km long orthogonal supersegment (<10° obliquity) dominantly erupts normal MORB with progressive K/Ti enrichment from east to west. To the west is the 400 km long oblique supersegment (up to 56° obliquity) with two robust volcanic centers erupting enriched MORB and three intervening amagmatic accretionary segments erupting both N-MORB and E-MORB. The systematic nature of the orthogonal supersegments' ridge morphology and MORB composition ends at 16°E, where ridge physiography, lithologic abundance, crustal structure, and basalt chemistry all change dramatically. We attribute this discontinuity and the contrasting characteristics of the supersegments to localized differences in the upper mantle thermal structure brought on by variable spreading geometry. The influence of these differences on the erupted composition of MORB appears to be more significant at ultraslow spreading rates where the overall degree of melting is lower. In contrast to the moderate and rather constant degrees of partial melting along the orthogonal supersegment, suppression of mantle melting on the oblique supersegment due to thickened lithosphere means that the bulk source is not uniformly sampled, as is the former. On the oblique supersegment, more abundant mafic lithologies melt deeper thereby dominating the more enriched aggregate melt composition. While much of the local major element heterogeneity can be explained by polybaric fractional crystallization with variable H2O contents, elevated K2O and K/Ti cannot. On the basis of the chemical and tectonic relationship of these enriched and depleted basalts, their occurrence requires a multilithology mantle source. The diversity and distribution of MORB compositions, especially here at ultraslow spreading rates, is controlled not only by the heterogeneity of the underlying mantle, but also more directly by the local thermal structure of the lithosphere (i.e., spreading geometry) and its influence on melting processes. Thus at ultraslow spreading rates, process rather than source may be the principle determiner of MORB composition.This work was originally funded in large part by NSF grants OCE-9907630 and OCE-0526905 and more recently by OPP-0425785

Systematic LREE enrichment of mantle harzburgites: The petrogenesis of San Carlos xenoliths revisited

We are grateful to K. Itano for fruitful discussion of the ideas developed in this paper and K. Ozawa for support on the use of his opensystem melting model. The manuscript benefited from constructivecomments provided by Q. Xiong and three anonymous reviewers as well as from the editor X.-H. Li. This work was funded by a Japan Society for the Promotion of Science (JSPS) fellowship.The dichotomy between partial melting and metasomatism is a paradigm of mantle geochemistry since the pioneering work of Frey and Prinz (1978) on the occurrence of LREE-enriched harzburgites. However, the thermo-chemical implications of such two-stage scenarios are often poorly considered, and the latter fail to explain why trace-element enrichment and major-element depletion are often proportional.We here re-envisage the petrogenesis of the famous San Carlos peridotites based on new petrographic observations and detailed modal, major- and trace-element compositions. The lherzolites (and pyroxenites) are characterized by homogeneously fertile mineral chemistry and LREE-depleted patterns consistent with low degrees of partial melting of the lherzolitic protolith. Bulk compositions and mineral zoning suggest that opx-rich pyroxenites formed by pressure-solution creep during melt-present deformation, locally accompanied by magmatic segregations of cpx. The harzburgites are characterized by stronger mineral zoning with low-Mg# and Na-, Al- and Cr-rich cpx rims, and can be discriminated in a low-Jd and high-Jd cpx groups. The high-Jd group is interpreted as the result of local elemental redistribution in the presence of a low-degree hydrous melt, in good agreement with their wide range of LREE enrichment. In contrast, the MREE-to-HREE fractionation and increasing Cr# in spinel of the low-Jd group indicate that they experienced higher degrees of melting. Open-system melting simulations of trace-element fractionation during hydrous flux melting suggests that the high-Jd harzburgites are the result of low fluid influx producing poorly extracted melt, while higher influx led to higher melting degrees and efficient melt extraction in the low-Jd harzburgites; the lherzolites mostly remained below or near solidus during that process. The lithological and chemical heterogeneity of San Carlos mantle is thus compatible with a single-stage evolution, which is also supported by the striking consistency between Fe-Mg exchange and REE thermometric estimates (1057 and 1074 °C on average, respectively), indicating that harzburgites and lherzolites probably followed a similar P-T path and relatively little sub-solidus re-equilibration. These interpretations suggest that the development ofmelt extraction pathways promoted by reactive channeling instability is able to produce complex lithological heterogeneities during hydrous flux melting. This process provides a self-consistent explanation for the systematic enrichment of harzburgites observed in many mantle terranes and xenoliths worldwide. We argue that San Carlos is one of such examples where a ca 1.5-Ga continental lithosphere experienced localized flux melting and deformation during the tectonic reactivation of a Proterozoic subduction zone, providing new constraints on the mantle sources of volcanic activity in the Jemez Lineament.Ministry of Education, Culture, Sports, Science and Technology, Japan (MEXT) Japan Society for the Promotion of Scienc

Lower crustal crystallization and melt evolution at mid-ocean ridges

Author Posting. © The Author(s), 2012. This is the author's version of the work. It is posted here by permission of Nature Publishing Group for personal use, not for redistribution. The definitive version was published in Nature Geoscience 5 (2012): 651–655, doi:10.1038/ngeo1552.Mid-ocean ridge magma is produced when Earth’s mantle rises beneath the ridge axis and melts as a result of the decrease in pressure. This magma subsequently undergoes cooling and crystallization to form the oceanic crust. However, there is no consensus on where within the crust or upper mantle crystallization occurs1-5. Here we provide direct geochemical evidence for the depths of crystallization beneath ridge axes of two spreading centres located in the Pacific Ocean: the fast-spreading-rate East Pacific Rise and intermediate-spreading-rate Juan de Fuca Ridge. Specifically, we measure volatile concentrations in olivine-hosted melt inclusions to derive vapour-saturation pressures and to calculate crystallisation depth. We also analyse the melt inclusions for major and trace element concentrations, allowing us to compare the distributions of crystallisation and to track the evolution of the melt during ascent through the oceanic crust. We find that most crystallisation occurs within a seismically-imaged melt lens located in the shallow crust at both ridges, but over 25% of the melt inclusions have crystallisation pressures consistent with formation in the lower oceanic crust. Furthermore, our results suggest that melts formed beneath the ridge axis can be efficiently mixed and undergo olivine crystallisation in the mantle, prior to ascent into the ocean crust.This research was supported by the National Science Foundation (EAR-0646694) and the WHOI Deep Ocean Exploration Institute/Ocean Ridge Initiative.2013-02-1

Active megadetachment beneath the western United States

Geodetic data, interpreted in light of seismic imaging, seismicity, xenolith studies, and the late Quaternary geologic history of the northern Great Basin, suggest that a subcontinental-scale extensional detachment is localized near the Moho. To first order, seismic yielding in the upper crust at any given latitude in this region occurs via an M7 earthquake every 100 years. Here we develop the hypothesis that since 1996, the region has undergone a cycle of strain accumulation and release similar to “slow slip events” observed on subduction megathrusts, but yielding occurred on a subhorizontal surface 5–10 times larger in the slip direction, and at temperatures >800°C. Net slip was variable, ranging from 5 to 10 mm over most of the region. Strain energy with moment magnitude equivalent to an M7 earthquake was released along this “megadetachment,” primarily between 2000.0 and 2005.5. Slip initiated in late 1998 to mid-1999 in northeastern Nevada and is best expressed in late 2003 during a magma injection event at Moho depth beneath the Sierra Nevada, accompanied by more rapid eastward relative displacement across the entire region. The event ended in the east at 2004.0 and in the remainder of the network at about 2005.5. Strain energy thus appears to have been transmitted from the Cordilleran interior toward the plate boundary, from high gravitational potential to low, via yielding on the megadetachment. The size and kinematic function of the proposed structure, in light of various proxies for lithospheric thickness, imply that the subcrustal lithosphere beneath Nevada is a strong, thin plate, even though it resides in a high heat flow tectonic regime. A strong lowermost crust and upper mantle is consistent with patterns of postseismic relaxation in the southern Great Basin, deformation microstructures and low water content in dunite xenoliths in young lavas in central Nevada, and high-temperature microstructures in analog surface exposures of deformed lower crust. Large-scale decoupling between crust and upper mantle is consistent with the broad distribution of strain in the upper crust versus the more localized distribution in the subcrustal lithosphere, as inferred by such proxies as low P wave velocity and mafic magmatism